Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13781
- Subject:
- XR_002957763.1
- Aligned Length:
- 4969
- Identities:
- 243
- Gaps:
- 4691
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGTCTGTGGCAGCATCTGTGTGTGTATGTGAGACTGAAAGGAGGTGGGAGATGAGGAGGGGAAGGGAATCAGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCCAGCAGCAACAGGCTCTATTCTTCAGTTCTGCTAAAAGAAAGAGGAAGAGAGGAAGAAAAAAATAGACACTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTTTTTTTTCTCACGACACACCCTGAAGGAGAAGGCGCCTAGGCGCTGTCCGTAGTGCTGAAATGGTGCGTGGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAGACCTGTCTCCCCAACACAAGCTAGAAGACAACAAAATAGCAGCCAGGAAACGCTCTGATAAAGCTCTAGAT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGCTGCCAGGCCGAGCTCAAGGGAGCAGAACTAAGTTACATGATTCTGCTGCGGATGTATAAGCACCACTCCAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TAATTTATTATCACGGTTGGAGACTTTGACTTGTCACTTTATGACTTGAAATATGGCTCCATGGTAAATGCCCA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TAAAGCTGATTTTTAAAATCTGGATATTACAGTTCTAATTCTCACTTAGTTTAAAAGGTAGAATAGGCTTCTTG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TTTCATAGATCATTTGTGTGAATGTTGATTTGTTATGTCATTGACATCATACACACATGCTTACATTTTGAAGG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTGCTAGCGTTTCCCATTAATGCTTCTGAATTGATGCCAAAGGAAAGCATTGATTATAAATTAGGTTCCTTGGT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATTAGTTGGTGCATGACCCTGACCCTTTTCAAGCTATATGAAAGGTAATGATGCTCTCAAAAGCCTGCAAAATG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCTTATTCAGGAAAGCATAATGGATTAAAAATCCATTAGGTTCCACTTTCTTTGCTAGATGCTGAGATACAAAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ATAAATGAGATTTGGTCTCTGCCCTCGAGGAGATACGTGGCAAAATAATATGGTAAGTTCTACAAAGTTCTATA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CAAACACAGATTAATATGCTATTCATGTTTTATTAGCCATTGCCAAAGAAGGGATGAAGAACTGCAAAAAGATA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AAACACAGAATACTTGTACTTCAGGTCCTTGCCAATATCTACTGCCCAACTTTTACAAAAAAAATTGCTGAAAG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCATGAAATATATGAATGCCTTTCTAAAGCACATGTGGATAATCTATACTTCTGGAGCATCTATGATTTATTTT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CAGAACAATCCAAGTTATTAGAAAGGTAAATATGTTGGTGACATTGTTTAGAAGTTCCTCAAGCAGAATTGCCT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TTACTATGCTTTGACATTATGCTCTCAGCTTATATACAGTAATTCTATGTGAAACAGTAGCCAGCTTACACAAC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CTGCTCTATATCTACTACAGAGCTGTTACTAAAGTGTTGGTCAACATATAACTTACTATTTCTTATATAAAGAT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCCCAAGAAATTTAGATTTCATAGATATATCCCCAAAAGCATTTCTTTCAATACCAGTTTAATGAATTGAACTT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TCATACCTCACTTAAATCAACCCAGGGTAAAGTGGTATGTTCTGTTCTTACACACAATGAAAATCATGTAACTA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 ATTAAAGTTAGCATTTATTTTAGCTACTAGGGATGCCAGAGTCAAATTAACAGCTGAAAATGAATAACTACATA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AGACCTTAAGCCTTTTATATCTTTTCTTTTTTTTTAATCACCTTAACTACTGCAATTTTGGTTTCTTAGGTAAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GATAATATTATTTTCTTTTAATTATTTGTTTTAATGTGTGACCTCATGTAAATGTCCTCATAAAATCAGAAGTG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GAGTAAATAAATAAATAAAGTAAATTTCTCTACTTTTTGATTATTGGGTGAGTGTATATGGTTGTTTTATAAAT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TTATTCTAAATAGGATACTAAAATACAGAAAATGTATCATCTAATTAGCTATGAAGATAAAAATCTAAACTATA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 ATGAGGAAATATTAAAATGTCAAGATGACGAAGAAATTTTTCAGTTTATATAATTATAGATCAGCTTAATTTCA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AACCACTTTGTTACCCTATTGCTATTTTTATACTCTAAATAGTGTCCCTTATATGACTAAGACTTTTTGTTATC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TCAGAGATTGGAAGTGTTAATTGTCCACCTTGTTAGAAGACATGGTAACTATAGGAATTTAGAAAGCATGATAG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CCCAACTGTAATGAATATATTCTAGAATGAGGTTGTCACAAAGAAACTGAAAACAAGAATTTCCTCTAACAACT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GAGCTCAGGATTCTTTTCAGAGGAAAATTTAGCTTGCATAAATTCTTGCCATCTTGGCTCTAGTTGACTTCTTG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CTCTCAACTTTTGCAAAGTGAGATCACCTTTACCTCTTCAACCTATGAGGCCAACATGTTACTTTCAATTTTTC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 AGGAAAATCTACGTCTTGTTTGGCTGAGGTTTGATTATTATTCCTTAACTAAAATATTTTAATGTAGCTGTGCT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TTTTAATTTGAATATTGCTATTGATTCAAACATTGGGTAGCATATCTTTCAAATGTGAAATTTTAAAACATGTA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TTAAAGACAAACATAAATTAGTTTTGGTATAACTATTTTTTAAGATTAATCCAATGCTTTTTTGGCTTTAGATG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 ATGTTTGGTAATTAGCTATATTCAAAAGTCAACCTTTTTTTTTTTTCAAAAAATGAACTCCTATGTATATGAGT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GTTATTTTTATCTACCCATGTCTTTTTTGTCTACATATACAGTTTTAATCATTGTTTCGGGGGGAGGAATAAGA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 ATGATTTTGAAATTTCACTAAGAAAGATATGCCCTCTTCCTAAAAATACATATATACAGATGTTTTGCTCACAG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CTCAGGTATTCATGGATCTCTGGAAGTTCATTTTTATAATCCCAAGGTAATCCAAAGAGCCTGCTAAAAAATTC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TGCTGTAAATGCATGGTACATGATCTCATTCCCTGTTTTACAACGAAGTATTGAATGGCTTAAACTCCTACTTT 2886
Query 1 ----------------------ATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCGCGATCTCCACT 52
|||||||||..||||||.|||||||||||||||||.||||.|||||||..||
Sbjct 2887 TTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCCCTCTGTTACCCAGGCTGGAGTGCAGTGGCTCGATCTCTGCT 2960
Query 53 CACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGC 126
|||||||||||||||.|.|..|||||||||||||||||||.||||||||.|||||||.||||||||||| .||
Sbjct 2961 CACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTTCTGAGTAACTGGGATTACA--AGC 3032
Query 127 CCA--CCACCACAGCTGGCTAA-----------TTTTTGTATTTTTAGTAGAGACTGGGTTTTACCATATTGGC 187
.|| |||.||...|||||||| |||||||||||||||||.|..|.||||||.|.|||.||||.
Sbjct 3033 ACATGCCATCAGGCCTGGCTAATTTTTATTTTTTTTTTGTATTTTTAGTACAATCAGGGTTTCAGCATGTTGGT 3106
Query 188 CAGACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGAGT 261
|||.||||||||||||||||||||||| ||.|||||||||||||||||||||||.|||||||||||.|||.||
Sbjct 3107 CAGGCTGGTCTCGAACTCCTGACCTCA--TGATCCGCCTGCCTTGGCTTCCCAAAATGCTGGGATTACAGGCGT 3178
Query 262 GAGCCACTGCGCCTGGCC-----------ATT------------------------------------------ 282
||||||..|||||||||| |||
Sbjct 3179 GAGCCAACGCGCCTGGCCAACTCCTACATATTTTAAAGCCACCCCATTAGTTTTCTATTTTTTTCCCCTTGGAG 3252
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3253 ATCTTCCTTTAGGTCATTTTTACCATCTGATATCTCAAAACTAAGCCAAGGCTGAATGTGCTGAAATAGGATTA 3326
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3327 GAGAGTACAGTAATAGGATAATTAGATTTGATTAGAAAATGACTGTGTGGGATTTTGTCAACAGTGAAGAAATG 3400
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3401 ATCTAAGTATGTGGACTCCTAAGTGAATTGAGCATGATGACACTTTAGTGTAGTTAATGATCTAATGCTGGTCT 3474
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3475 GGTTGATGAGTCCCATTGAAAATGAGATGCTCTGTTTTCTGGTAAACTTTTCTGCAAAGAAAAATGTACTAAAT 3548
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3549 GTTTCAGTTCAGAGTGTTCTATTTAAATGAAATTTCATTTAATTGCTTTTAGTTTTACTGCCCATAAGCCTTCA 3622
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3623 GTTGTTTCATTTAAAGTGTACTTTAAGCCCTCCACTATATTCACTGTTGAATCTAATGAGTATGAGAGGGTACC 3696
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3697 TTGGGCACAATCTCCACGAATGTATGAGCCATAACTACAGTATAGTATATAGAGATTAGCTTAAGTTATTTTGC 3770
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3771 TCTGCTAAAGATAGAGAAACAAGAGCAGTTTTCTAACATAATGTATGCTTCTGTAATAGGACTCAGTTAAAAAA 3844
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3845 TAATTGGCAAATAGGAATGTCAATGAAATGTGGAAATCAATTGTTTTATACATGATTTTCCCCAATACGTTAAT 3918
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3919 GTTTTGACTACCAAGTAAAAGCAGTTGCACTCTAAGTCCACTAACACAGCTGAAGGTAGTAAGCTGTGGAGGAA 3992
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3993 AGTAGTCCTATATATAACACCCATTCACTCCTCCTTTTTCCTCTTGGCTTAATTTCACCATACGATCTGTCTTG 4066
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4067 AAAATGCTTATTGCACAATTCTTCCTGATCTTTGTGCATTTGTCCTTGTTTTTGTAACTCAACCTTTGGTTTAT 4140
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4141 TTATTCCATCATTCTTTCCTAACTCAAACAAATTTGTGAAGTTCTAAATGTATTGAAATATATGTCGTAACTTT 4214
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4215 TATTTTTAATTGTGCTAGCATTTTCTTAGCTTTGTAAATGTTTTTTGCAGTGCTATGGTTGTGATGTTATGTAA 4288
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4289 GTTTTACACTTTTTTCTCCAACATAATTTTTTCCCGAAATATTGCCAGTTATTTTTGTTATTGAATAGACTTAA 4362
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4363 TTTTCTTAGAGCAGTTTCAGGATTACAGAAAAGTCAGAGAGTACAGAAAGTTCCCATATATCTCCCATCCCTTT 4436
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4437 TCTCACAGTTTCACTTGTTATTAACATCTTACATTAGTGTGGTACATTTGTTAACAATTGATAAAACAATTTTG 4510
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4511 TTACATTATTATTAAGTACACAGTTTACACTAGAGTTTATTCTTTTTGTTGGTCAGTTCTATGAGTTTTGAATA 4584
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4585 GTGTATAATGTCATATATTCACCATTATATTGTCATGCAGAATAGTTTCACATTTCTGAATATCCCCTATTTAT 4658
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4659 CCCTTCCTCTTCCCCTCACAAACCCCTGGAATCCATTGATCTGAAACTGTCTTGCAGTTTTCTCTTTTCCAGAA 4732
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4733 TGTATGTATAGAGTCATACAGACTCTGTTGCCCTTTCAAACTGGCTTCTTTCATTTAACAACACGCATGTAAGC 4806
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4807 ATCCTTCATGACTTTTCATGGCTTGATAGCTCATTTATTTTTTATTGTTCAATAATATTTCATTGTATGGATAT 4880
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4881 GCCACAGTTTATTTATCTATATATCTGTTGAAAGATATCTCGGTTACTTCCAATTTTTGGCAATTATGAATAAA 4954
Query 283 ----------- 282
Sbjct 4955 GATACTATAAA 4965
