Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13781
- Subject:
- XR_002958051.1
- Aligned Length:
- 6954
- Identities:
- 241
- Gaps:
- 6677
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGCCGGTGATGGCGGCAGCGGCTGTGGTGGCTGCGGCGGGTCCGGGCCCATGAGGCGACGAAGGAGGCGGGACG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCTTTTACCCAGCCCCGGACTTCCGAGACAGGGAAGCTGAGGACATGGCAGGAGTGTTTGACATAGACCTGGAC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGGGGTCAGTTAAATGAAAGCATGGACCATGGGGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGTTGGACCATATGAACTTGGCATGGAACATTGTGAGAAATTTGAAATCTCAGAAACTAGTGTGAACAGAGGGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAGAAAAAATCAGACCAGAATGTTTTGAGCTACTTCGGGTACTTGGTAAAGGGGGCTATGGAAAGGTTTTTCAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GTACGAAAAGTAACAGGAGCAAATACTGGGAAAATATTTGCCATGAAGGTGCTTAAAAAGGCAATGATAGTAAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AAATGCTAAAGATACAGCTCATACAAAAGCAGAACGGAATATTCTGGAGGAAGTAAAGCATCCCTTCATCGTGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATTTAATTTATGCCTTTCAGACTGGTGGAAAACTCTACCTCATCCTTGAGTATCTCAGTGGAGGAGAACTATTT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ATGCAGTTAGAAAGAGAGGGAATATTTATGGAAGACACTGCCTGCTTTTACTTGGCAGAAATCTCCATGGCTTT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GGGGCATTTACATCAAAAGGGGATCATCTACAGAGACCTGAAGCCGGAGAATATCATGCTTAATCACCAAGGTG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GAGACATACCGTAAACAATTCTATAGTCATGTGAAACTAACAGACTTTGGACTATGCAAAGAATCTATTCATGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGGAACAGTCACACACACATTTTGTGGAACAATAGAATACATGGCCCCTGAAATCTTGATGAGAAGTGGCCACA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ATCGTGCTGTGGATTGGTGGAGTTTGGGAGCATTAATGTATGACATGCTGACTGGAGCAGTAGGTGCACAGTTA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AAAGCTGCATGTATTATTGGTCTGTGCTGAGTCACTATAGCAAGAGACCTGTCCTGTGCTTTCTGAACATGTTA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CCAGTGGAGTTTTCAAAGCCCAAAGATTTGTTATTAGCAGTTTAACACTAATAATGCTGTATGATTATATGGGA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TCCCATACTTTCCGAAACATTTTCTTTTAAATGATCTATGTCATGGCAGGCCTGTGAAATAGATGTTGAATAGA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TAATGCCCTTATTTTATAAATGGAGAAATTGAAGCATAAAATCACATAGCTCACTTATCACACAGAAAGTTAAT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GGTGGAAACACAGGCTTCCTTCCAGGACACTGCTACTTCCTCTGTCCTGTTGCTTAAAAACTGCACGTCTGCCG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCCACAGTGGTGCATGCCTGTAGCCTAAGCTACTCAGGAGGCTGAGGTGGGAGGATCATTTGAGCTAAGGATTA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TTAATAGAATCTAGCCTTGACAACATAGTTGAGACCCTGTCTGTAAAACAAAATAAAGGTCTTTAGCAGTTAGC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CCATTTCACAGCATACATTTCTGATCTCCATGTATAACTAATTTAGGAAATGGATAATATTATTCAAAATTTGT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TTCTTATATGCTAATATTTTTCTCTCCCTGCTAATATTTTTCACTTGTCTTCTACTCTTAGCCCCCATTCACTG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GGGAGAATAGAAAGAAAACAATTGACAAAATCCTCAAATGTAAACTCAATTTGCCTCCCTACCTCACACAAGAA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GCCAGAGATCTGCTTAAAAAGGTAAGGTTCTTAAATGGTCACTGACACTACAAGATTCAATGACTAGGATTTAA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CTAGATAGAATTTAATGTATATTTTGAATAAAGAGTCATATATAAATATTGAACAAAAAAGTCTTCAATTTTTG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AAGGCGAAGTACAGATTTGTTTAAAGACTTTCTTTTCATATTCTTTTTTTAAATTTTTTTTTTTTGAGACAGGG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TCTTGCCCTGTCACCCAGGCTAGAGTGCAGTGGTGCGATCTTGGCTCACTGCAACCTCAGTCTCCCAGGTTCAA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GCGATTCTTCCGCCTCAGCCTCTCAAGTAGCTGGGATTACAGGCACCCGCCACCACGCCCGGCTAATTTTTGTA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TTTTTAGTAGAGACAGGGTTTCACCGTGTTGGTCAGTCTGGTCTGGAACTCCTGACCTCAGGTGATCCACCTGC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CCTGGCCTCCCAAAGTGCTAAGTGCTGGGATTACAGACCCTTAAACAATATTAAGTAGTAATTAGTAAACTATA 2220
Query 1 ---------------------------------ATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCG 41
||||||||||||||||||..||||||||||||||||||||.
Sbjct 2221 TTTTCTTTTCTTTTCTTTTCTTTTTTTTCTGAGATGGAGTCTTGCTCTGTCGTCCAGGCTGGAGTGCAATGGCA 2294
Query 42 CGATCT--CCACTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTG 113
.||||| .|.||||||||||||||..|.|.|||||||||||.||||||||||.|||||.||||..||||||||
Sbjct 2295 TGATCTTGGCTCTCACTGCAACCTCCACCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGTCTCCCTAGTAGCTG 2368
Query 114 GGATTACAGGTGCCCACCACCACAGCTGGCTAATTTTTGTATTTTTAGTAGAGACTGGGTTTTACCATATTGGC 187
||||||||||||..|||||||||..|.|||||||||||||||||||||||||||..||||||.|||||.|||||
Sbjct 2369 GGATTACAGGTGTTCACCACCACGCCAGGCTAATTTTTGTATTTTTAGTAGAGAAGGGGTTTCACCATGTTGGC 2442
Query 188 CAGACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGAGT 261
|| || ||||||||||..||||||||||.|||.|||||||..||.|||||||||||||||||||.|||..|
Sbjct 2443 CA-AC----CTCGAACTCCCAACCTCAGGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCAT 2511
Query 262 GAGCCACTGCGCCTGGCCATT----------------------------------------------------- 282
|||||||||.|||||||||.|
Sbjct 2512 GAGCCACTGTGCCTGGCCAATAAACTATATTTTCTCAAGCCAAAGTAGACAAGCACAGTCTAAAAAGGAAAAAA 2585
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2586 AAAAATCAGTTTGACTAAGGTTCTTTATCCAAGCTTTTTTTCCTCTTTAAAGCTGCTGAAAAGAAATGCTGCTT 2659
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2660 CTCGTCTGGGAGCTGGTCCTGGGGACGCTGGAGAAGTTCAAGTAGGGATTGGCATCTTTGGTGTTTTGTGGGGA 2733
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2734 AGATAATGCTAGTTTTATGTATTTCTGAGGGTTATATGTAGTTGCTTATAAGTTTAGCTTATTTTGTGACTTGT 2807
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2808 AACTTCAAAAAGGTGATTAATTTATCAATCCAGCAAAGTCTAGTCCCCTCAACTTTTCTTCCTGCTTTTTTTTT 2881
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2882 CCTAGGCTCATCCATTCTTTAGACACATTAACTGGGAAGAACTTCTGGCTCGAAAGGTGGAGCCCCCCTTTAAA 2955
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2956 CCTCTGTTGGGTTTTACATATGTGGCTCCATCTGTACTTGAAAGTGTGAAAGAAAAGTTTTCCTTTGAACCAAA 3029
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3030 AATCCGATCACCTCGAAGATTTATTGGCAGCCCACGAACACCTGTCAGCCCAGTCAAATTTTCTCCTGGGGATT 3103
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3104 TCTGGGGAAGAGGTGCTTCGGCCAGCACAGCAAATCCTCAGACACCTGTGGAATACCCAATGGAAACAAGTGGC 3177
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3178 ATAGAGCAGATGGATGTGACAATGAGTGGGGAAGCATCGGCACCACTTCCAATACGACAGCCGAACTCTGGGCC 3251
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3252 ATACAAAAAACAAGCTTTTCCCATGATCTCCAAACGGCCAGAGCACCTGCGTATGAATCTATGACAGAGCAATG 3325
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3326 CTTTTAATGAATTTAAGGCAAAAAAGGTGGAGAGGGAGATGTGTGAGCATCCTGCAAGGTGAAACGACTCAAAA 3399
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3400 TGACAGTTTCAGAGAGTCAATGTCATTACATAGAACACTTCAGACACAGGAAAAATAAACGTGGATTTTAAAAA 3473
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3474 ATCAATCAATGGTGCAAAAAAAAACTTAAAGCAAAATAGTATTGCTGAACTCTTAGGCACATCAATTAATTGAT 3547
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3548 TCCTCGCGACATCTTCTCAACCTTATCAAGGATTTTCATGTTGATGACTCGAAACTGACAGTATTAAGGGTAGG 3621
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3622 ATGTTGCTTCTGAATCACTGTTGAGTTCTGATTGTGTTGAAGAAGGGTTATCCTTTCATTAGGCAAAGTACAAA 3695
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3696 ATTGCCTATAATACTTGCAACTAAGGACAAATTAGCATGCAAGCTTGGTCAAACTTTTTCCAGCAAAATGGAAG 3769
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3770 CAAAGACAAAAGAAACTTACCAATTGATGTTTTACGTGCAAACAACCTGAATCTTTTTTTTATATAAATATATA 3843
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3844 TTTTTCAAATAGATTTTTGATTCAGCTCATTATGAAAAACATCCCAAACTTTAAAATGCGAAATTATTGGTTGG 3917
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3918 TGTGAAGAAAGCCAGACAACTTCTGTTTCTTCTCTTGGTGAAATAATAAAATGCAAATGAATCATTGTTAACCA 3991
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3992 CAGCTGTGGCTCGTTTGAGGGATTGGGGTGGACCTGGGGTTTATTTTCAGTAACCCAGCTGCAATACCTGTCTG 4065
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4066 TAATATGAGAAAAAAAAAATGAATCTATTTAATCATTTCTACTTGCAGTACTGCTATGTGCTAAGCTTAACTGG 4139
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4140 AAGCCTTGGAATGGGCATAAGTTGTATGTCCTACATTTCATCATTGTCCCGGGCCTGCATTGCACTGGAAAAAA 4213
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4214 AAATCGCCACCTGTTCTTACACCAGTATTTGGTTCAAGACACCAAATGTCTTCAGCCCATGGCTGAAGAACAAC 4287
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4288 AGAAGAGAGTCAGGATAAAAAATACATACTGTGGTCGGCAAGGTGAGGGAGATAGGGATATCCAGGGGAAGAGG 4361
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4362 GTGTTGCTGTGGCCCACTCTCTGTCTAATCTCTTTACAGCAAATTGGTAAGATTTTCAGTTTTACTTCTTTCTA 4435
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4436 CTGTTTCTGCTGTCTACCTTCCTTATATTTTTTTCCTCAACAGTTTTAAAAAGAAAAAAAGGTCTATTTTTTTT 4509
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4510 TCTCCTATACTTGGGCTACATTTTTTGATTGTAAAAATATTTGATGGCCTTTTGATGAATGTCTTCCACAGTAA 4583
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4584 AGAAAACTTAGTGGCTTAATTTAGGAAACATGTTAACAGGACACTATGTTTTTGAAATTGTAACAAAATCTACA 4657
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4658 TAAATGATTTACAGGTTAAAAGAATAAAAATAAAGGTAACTTTACCTTTCTTAAATATTTCCTGCCTTAAAGAG 4731
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4732 AGCATTTCCATGACTTTAGCTGGTGAAAGGGTTTAATATCTGCAGAGCTTTATAAAAATATATTTCAGTGCATA 4805
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4806 CTGGTATAATAGATGATCATGCAGTTGCAGTTGAGTTGTATCACCTTTTTTGTTTGTCTTTTATAATGTCTTCA 4879
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4880 GTCTGAGTGTGCAAAGTCAATTTGTAATATTTTGCAACCCTAGGATTTTTTTAAATAGATGCTGCTTGCTATGT 4953
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4954 TTTCAAACCTTTTTGAGCCATAGGATCCAAGCCATAAAATTCTTTATGCATGTTGAATTCAGTCAGAAAAGAGC 5027
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5028 AAGGCTTTGCTTTTTGAAATTGCAACTCAAATGAGATGGGATGAAATCCTATGACAGTAAGCAAAAACAGAACC 5101
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5102 ATGAAAAATGATTGGACATACACCTTTTCAATTGTGGCAATAATTGAAAGAATCGATAAAAGTTCATCTTTGGA 5175
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5176 CAGAAAGCCTTTAAAAAAAAAATCACTCCCTCTTCCCCCTCCTCCCTTATTGCAGCAGCCTACTGAGAACTTTG 5249
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5250 ACTGTTGCTGGTAAATTAGAAGCTACAATAATAATTAAGGGCAGAAATTATACTTAAAAAGTGCAGATCCTTGT 5323
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5324 TCTTTGACAATTTGTGATGTCTGAAAAAACAGAACCCGAAAAGCTATGGTGATATGTACAGGCATTATTTCAGA 5397
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5398 CTGTAAATGGCTTGTGATACTCTTGATACTTGTTTTCAAATATGTTTACTAACTGTAGTGTTGACTGCCTGACC 5471
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5472 AAATTCCAGTGAAACTTATACACCAAAATATTCTTCCTAGGTCCTATTTGCTAGTAACATGAGCACTGTGATTG 5545
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5546 GCTGGCTATAACCACCCCAGTTAAACCATTTTCATAATTAGTAGTGCCAGCAATAGTGGCAAACACTGCAACTT 5619
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5620 TTCTGCATAAAAAGCATTAATTGCACAGCTACCATCCACACAAATACATAGTTTTTCTGACTTCACATTTATTA 5693
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5694 AGTGAAATTTATTTCCCATGCTGTGGAAAGTTTATTGAGAACTTGTTTCATAAATGGATATCCCTACTATGACT 5767
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5768 GTGAAAACATGTCAAGTGTCACATTAGTGTCACAGACAGAAAGCACACACCTATGCAATATGGCTTATCTATAT 5841
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5842 TTATTTGTAAAAATCCAAGCATAGTTTAAAATATGATGTCGATATTACTAGTCTTGAGTTTCTAAGAGGGTTCT 5915
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5916 TTATGTTATACCAGGTAAGTGTATAAAAGAGATTAAGTGCTTTTTTTTCATCACTTGATTATTTTCTTTAAAAT 5989
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5990 CAGCTATTACAGGATATTTTTTTATTTTATACATGCTGTTTTTTAATTAAAATATAATCACTGAAGTTTACTAA 6063
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6064 TTTGATTTTATAAGGTTTGTAGCATTACAGAATAACTAAACTGGGATTTATAAACCAGCTGTGATTAACAATGT 6137
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6138 AAAGTATTAATTATTGAACTTTGAACCAGATTTTTAGGAAAATTATGTTCTTTTTCCCCCTTTATGGTCTTAAC 6211
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6212 TAATTTGAATCCTTCAAGAAGGATTTTTCCATACTATTTTTTAAGATAGAAGATAATTTGTGGGCAGGGGTGGA 6285
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6286 GGATGCATGTATGATACTCCATAAATTCAACATTCTTTACTATAGGTAATGAATGATTATAAACAAGATGCATC 6359
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6360 TTAGATAGTATTAATATACTGAGCCTTGGATTATATATTTAATATAGGACCTATTTTGAATATTCAGTTAATCA 6433
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6434 TATGGTTCCTAGCTTACAAGGGCTAGATCTAAGATTATTCCCATGAGAAATGTTGAATTTATGAAGAATAGATT 6507
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6508 TTAAGGCTTTGAAAATGGTTAATTTCTCAAAAACATCAATGTCCAAACATCTACCTTTTTTCATAGGAGTAGAC 6581
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6582 ACTAGCAAGCTGGACAAACTATCACAAAAGTATTTGTCACACATAACCTGTGGTCTGTTGCTGATTAATACAGT 6655
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6656 ACTTTTTCTTGTGTGATTCTTAACATTATAGCACAAGTATTATCTCAGTGGATTATCCGGAATAACATCTGAAA 6729
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6730 GATGGGTTCATCTATGTTTGTGTTTGCTCTTTAAACTATTGTTTCTCCTATCCCAAGTTCGCTTTGCATCTATC 6803
Query 283 -------------------------------------------------------------------------- 282
Sbjct 6804 AGTAAATAAAATTCTTCAGCTGCCTTATTAGGAGTGCTATGAGGGTAACACCTGTTCTGCTTTTCATCTTGTAT 6877
Query 283 ------------------------------------------------------------------------ 282
Sbjct 6878 TTAGTTGACTGTATTATTTGATTTCGGATTGAATGAATGTAAATAGAAATTAAATGCAAATTTGAATGAACA 6949
