Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13781
- Subject:
- XR_950153.2
- Aligned Length:
- 4509
- Identities:
- 248
- Gaps:
- 4229
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGAGCCACCGCACCTGGCCTATATTAATTTTTAAACATGTTAATTGCTCATTTAAAATAGGTTTCAAAAAAATT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATCAAGGAAATACATGTTTATGGCACAAAACTTGGAAAACTATTTTAAAAACTAGAAAGAGAAAAAAGAATCCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATCCAAATCTACCATTCAGAGCATCGTGGGCAGCCCTCCTAGGCTTGTTTGCTGTACATCTTGCTGGGATTTTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TAAGAAGAATCCCTTCTGAAAACTGCATGAAATTCTCTTAGATCTAGATACCGGCATTTACCAGATGGGTTTCC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TAGATGTTAGACATCTCATTCTAGTTTTTCCTTATATAGTAGAGGACATCTTTGTGCGTATATGTTTGTCTACA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTGTTTTCTTGGCAGTTTCTAAATGTGGGTCTCCTGGTCAAAAGCGCAGGCATTGTTAAAGCCCTCGGTACGCA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TTTTCCAGTTGCTTTTAAAAGCTGTCTCTCAATTTACATTCCAACCTGAAGCACAAGGGAGTGCCTATTTGACC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCGATCTCATGGACGTGATGACTGTCTTTTAAAAATACTTACTAATTAATGAATCATCTTTGAGCACGCCTGGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AACCTGGAGGCTGGTGCAGAGCTCTGGGGTGCTGTGGGCATCATATCATATTGGCTTCCTGACCTTGGCATCCC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTCCAGCTGACTCCAATAAAGATCCCAGGGGAATGAGGGACAGAGGCCCCAAGTATCGTAACTTATAGGTTGAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GGCAGTTCTCCCTAAACCCAAATGGTATTTGTATGTGTGTAGTGGGGGGATTTAAGTAATTTTAAAGTTTACCT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAAGGATAAGCTGGAGACAATTACTGAGAATTTTTTGAAAAATGGGAGTGATGAAACAGAGTTTGCCCTTGCAG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ATAATAAGATTTAAGTATTTTATAAAAATAGAAAGAGAAGATAATATAGGCCAAAGCTTATCTGATTTAAGAAT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GAGGGAAAGACTTACCAGACATAGACTATAAAGGAGCTACAGAAGAAAAATAGAAATAGCATTTTGAATTCTAT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTTAAATTAAAAAAAAGCGTGAGCAAAATTTGAAGCTATTTGTTTGCTAAGAACACATATTTGCAACATATAGA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AAAAATGATTACTATCCCTTGTATATATTCCTTCATTTAACATTTCTTAAGTGCTTATAATGGTTGATGCACTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TTATAAATGCTGGGAATTCAAAAAATATATTAAATACTTTTATATTTCCATAAGAAAGAGATTGAACCTAATGA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AAAAATAGATTAAAGTGTAAGCAATTTACAAAAGGAAAGGTAGAAATGGCCAATAAGCATATGAAAAAAATGCT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AAGCTCCGTAATAATCATGAGCGTGTCAATTAGTTCAACAATGAGACATGATTATTCACTCTAAAAGTTAAAAA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 ATTTTAGAACGATTGAACTGAATTTTGACCAGTTGAAGGGTAAACTGGTTAAAACGTTTTGGACACAATTTGAT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AACAGTTGTTTAAGATTATTAATATGATATATAATTTGATCTAGAAATTCTAGGACTCTATCCTATGCATTGAA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TTAGAGATGTGGCCAAATTTTATGACAAAAAGTGCTTATCACAGTATTACTACACACACATACACACACACACA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AATAGACTCGACCAAGAGCTTTAACATTTGAGTAATAGTTTAATAAATTAAGGCACACTTATACAATGGAATAG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TATGTAGATATTCAAAACTTTTTTCTAAGAATATTTAATGCCTGTTACTAGTTAAAAATATGATATGAAATGAT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 ATAAATTTTAAAATATATGTGTTCAAAAACATATCTTTTATACATGTTTTTATAACGCAATGTTATATAAAATG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TTTTATAATGCAATGCTCATACACATATATACATATAAAGGACCGAACCCGTGTAAAAAATGTCTGGAAGGATG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CAGAGCAGATTGTTAACTTTGGGTAGGAGGCTCTTATTTCAATTTTTAATTTTAAATTATTAATATTTTGTTTT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TAAAATTTTGCTATGAGGGAGTACTGCTTTTGTAAATAAGGAGATATTTTAGGAAGTTAGTGTGAGATAAAAAA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TATGATTAATATTAAATATACACAAGCACCTAGCAAAACACACAGGAGAAAATAGCATTATGATGAATAGGAAC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TATATTTTTATTCTTATTTGTATTTTCTAAATCTTCTACAACAAATAAATGTAGCTTTTATAGCTGGCAAGTAA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 ACCACAGCTATCATTATAACATGCGTAACATATTGAGATGACCCTTCTGATCGTTTTTCCAGGCTCAGGGTGGC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CCAAAATTCAGGAAACATAGGATACACTTATTTTAAAACATTATATTTGTTATACCTCCAAATTCTGGGCTCAA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TATGTTTTTCTTTAACTGCTAGACACTTTTTCAGGCGTAGTACCTCTACATTTGAAGCAATGGGTCCAATTGTT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 AACCTGAACAAAGTACAATAAATAATCACTATTTAACCCTTGTTTCCCGAATTTCTGGATACTCTGAAATGTGT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TTGTTGCACTGGGAGTTGCAGAAAAACATATTGCAATAGTATTCAAAAATGTCTTGTGCTGTTTATCTAAACAT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GGTCCAAACATTTTGGAAAATAGTTTGGCAGTTTCTTAGGCAATTAAACATACACCTACCGTACAACACGATAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TTGCCCTCCTAGGTATTTGCCCAAGAGAAGTGAAAGCATATGTTGCTACGCAGCTTGTACACAAAAGCTCACGT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CAGCACTGCTCGTTAACAGCCCCAAACTGGAAACCACCCTGATGTCCACTAATGGAGAAAGAGATGAATGGCGA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TATATGTACATCTACATGTGTATCCGCATTTCTCTGCAATACAAAAGGAGCAAACCACTGCTAACACAGTGTGG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 ACTCCCAGACCATGACTGTGAGGGAAGAAGGCGGAAACGAGTGTGCAGCGTGCAATTTCATTTTTATCGTATTC 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TGGAAATGACAACGTTCTGAGCCACTACTGCTGGGTGTCTGCTCCTGGGGTACCTGCTGGCCCTGAATCACCCC 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TCTGGATTCCTGGGACTCCAGGAACTTTGGGATCCAGAGAAGCGAGCTCTTCCATCCCAGGACCCATGACTGCC 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CACGCTGTTGAGCTTCTGAGGGCAGGGACCATGTTTTCTCTCTCAGAGCCAGGGCTGCATGTTGGAACTGGCCC 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 TGACAGTGTCAGTTAAACTTTCACGAAACAAATGTTCCTGAACTTGAAGCCATAGGACAGGACTCTGAAGATCA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CAGAATCACACAGTGAGAAAATGATGCCCTTTTCAGCTCTGCACCAGTCCTTCTCATGACAGAAAGGAGAGTGT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 CTCGGGTTGGTTCGAGGATGTCTTTAACCCCTCTCATCGTTGCCCGTCTCGACACAGAACCAAGAACAGGCGGG 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 TCCTAGACTCAGACTCTAGTGGACGAATGTGTCCAGCAAAAGTAACAGCATTACTTTATTTTACAATTATCTTC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 AACGTATACCAAGTGATACTGGTTTTCCATTTATAATGGCAATGTAGCTTCCCTTGAGTTTGTTTTAAATTTTA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 ATTCAATTTCAGACATACGGAAAAGTTGCGAGCATAGTAGAGTTCCTGGATGCCTTTCACCCAGATTCCCTTAG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TGTTAATATTTTCTCCCAATCTCTCTCTCTGTGTCTCCCCCTACCTTCCCCACCAAACTACCTACCTACCTACC 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 TACCTACACACACACACACACACACACACACACACACACACACTTTTTTTCTGAATTATTTAAAAGCATGCTGT 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 TCTTTCACTGCCAGTCCTGGTAATGTCCTTTATGGCAAAAGAAAACCCCAGGCCATGCCTTGCGTTCAGTTGGG 3848
Query 1 ----------------------------ATGGAG--TCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCGCGA 44
||.||| ||.|.|| |||||||||||||||||||||||||||.|.
Sbjct 3849 ATCCCTCTTTTTTTTTCCTTTTTTTGCCATAGAGTTTCATTCT-TGTCACCCAGGCTGGAGTGCAATGGCGTGG 3921
Query 45 TCTCCACTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTG-AGTAGCTGGGAT 117
||||..|||||||||||||||||.|.||.||||||||||||||||||||||||||||||.| ||| ||||||||
Sbjct 3922 TCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGTCTCAGCCTCCCGAAGT-GCTGGGAT 3994
Query 118 TACAGGTGCCCACCACCACAGCTGGCTAA-TTTTTGTATTTTTAGTAGAGACTGGGTTTTACCATATTGGCCAG 190
||||||..|||||||||||..|.|||||| |||||||||||||||||||||..||||||.|||||.||||||||
Sbjct 3995 TACAGGCACCCACCACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAG 4068
Query 191 ACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGAGTGAG 264
.|||||||.|||||||||||||||||||.|||||||||||.|||.|||||||||||||||||||.|||.|||||
Sbjct 4069 GCTGGTCTTGAACTCCTGACCTCAGGTGATCCGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAG 4142
Query 265 CCACTGCGCCTGGCCATT-------------------------------------------------------- 282
||||.||.||.||||..|
Sbjct 4143 CCACCGCACCAGGCCTCTTTTACCTCTAAATGTGTCAGTACTCCAGTGTGTATTTCCTAAAAGCAAGACTATTT 4216
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4217 TATTACATAAGTATAGTACACTTTTCAAAATCAGGGAACTAACACTGATATAACCCTGTAGTCACTAGACCTCC 4290
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4291 TTCCTGTTTCACTGCCTGTCCTTGTAATGTCCTTTATGGCAAAAGAAAACGTCAGGTCATGCCTTGCCTTCACT 4364
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4365 CGGGATGCCTCTTTGACTCTTTTCATCTGAAACAGTTTTTGAGTCTTTGTATTCTATGACATTGGCATTTTTGA 4438
Query 283 --------------------------------------------------------------------- 282
Sbjct 4439 AAAGTACCTGCCAGATATTTTTTAAGATGTCTAAAAATTCCTTTTTAAATAAATTTAAGTTTTAAATAA 4507
