Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13787
- Subject:
- XR_001743500.1
- Aligned Length:
- 3111
- Identities:
- 177
- Gaps:
- 2916
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAATAAACGTGGCGGGACGTATGTGTCATGGCGCTCTCCATCTAAAGTCTGTGCAGCTTCCGGAGAGTGGCGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTGATTTTCTCACTTTGGACTGGTTTTTACTTCCCGACTTCTGGACTCATCTTTCAAGAGGACTTTAGACTAAT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGCAGATAATTAAGAGAATATGCCTTCTGCATCCTGTGATACACTACTGGATGACATCGAAGATATCGTGTCTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGGAAGATTCAAAACCACAAGATAGGCATTTTGTAAGAAAGGATGTTGTCCCGAAGGTACGAAGGCGAAATACC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAAAAATATTTGCAAGAGGAAGAAAACAGTCCACCAAGTGACAGCACTATTCCAGGCATACAGAAAATTTGGAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACGAACATGGGGTTGTTCTCATAATAATTCAGATGGAGAATATATGGCTGGACAGCTAGCTGCTTATGGCTATA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AAATTACAGAAAATGCATCCGATGCAGATTTATGGCTCCTGAACAGTTGCACTGTAAAAAACCCAGCTGAAGAC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CACTTTAGAAACTCAATTAAAAAAGCTCAAGAGGAGAACAAGAAAATCGTACTGGCTGGATGCGTTCCTCAAGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCAGCCTCGCCAGGACTACCTTAAGGGACTGAGTATCATTGGGGTTCAGCAGATAGATCGTGTGGTAGAAGTTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGGAGGAGACAATTAAAGGTCACTCTGTGAGACTGCTGGGTCAGAAAAAGGATAATGGAAGGCGGCTTGGGGGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCACGATTGGATTTGCCGAAGATTAGGAAGAATCCACTGATAGAAATCATTTCCATCAATACCGGGTGTCTCAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGCTTGTACCTACTGCAAAACTAAACACGCCAGAGGAAATTTGGCCAGTTATCCAATTGATGAACTAGTAGATA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GAGCCAAACAATCTTTTCAAGGAAATGGCAAAAATCCTTAATCACCCCAGAGTCTACGCTTTTCTGCACATACC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGTCCAGTCTGCCTCCGACAGCGTACTCATGGAAATGAAAAGAGAATACTGTGTGGCTGACTTCAAAAGAGTAG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGGATTTTCTGAAAGAGAAAGTTCCTGGAATAACTATTGCTACAGATATTATCTGTGGTTTTCCTGGAGAAACA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GATCAGGATTTTCAAGAAACAGTGAAACTTGTTGAAGAGTACAAATTCCCAAGCCTGTTTATTAACCAATTTTA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CCCAAGACCAGGAACTCCTGCTGCAAAAATGGAACAAGTTCCAGCACAAGTGAAAAAGCAAAGGACAAAAGATC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TTTCTCGGGTGTTTCATTCTTACAGTCCATATGATCACAAGATTGGTGAAAGACAACAAGTGTTAGTAACAGAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GAATCTTTTGATTCCAAGTTTTATGTTGCACACAATCAATTCTATGAGCAGGTTTTAGTGCCAAAGAACCCTGC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GTTCATGGGGAAGATGGTTGAAGTGGACATCTATGAATCAGGCAAACATTTTATGAAAGGGCAGCCAGTATCTG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 ATGCCAAAGTGTACACGCCCTCCATCAGCAAACCGCTAGCAAAGGGAGAAGTCTCGGGTTTGACAAAGGACTTC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AGAAATGGGCTTGGGAACCAGCTGAGTTCAGGATCCCACACCTCTGCTGCATCTCAGTGTGACTCAGCGAGTTC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CAGAATGGTGCTGCCCATGCCAAGGCTACATCAAGACTGTGCGCTGAGGATGTCCGTGGGCTTGGCTCTGCTGG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GTCTTCTTTTTGCTTTTTTTGTCAAGGTCTATAATTAGAATACAACTAATGGAAACATCTATAAAGAAGAATAC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 ATTTCTAATTAAAATCTTCAATGAACAGGAAAGCGACATCTCCATTCTCCAAGGGCAATAATTTGTACTGGTCA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TGCTGCCTCCTTCTCAGCCACTCTTCTTAATGAGGCTCCCCCTGTCTCACATTGAGTTGGGCCCATTGGTTATT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TGACCTAAAACCTAATCACCGCTACCATAGCACATCCTTCAAATTAAACTGCTTTTGGTTTACTTTTAGCAAGA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AATGCAAGCGGTTGCATTTTTTTCTGTTTGTTTCAATCTCTAATCTTTAAGTCAGAACCTAATTGTACAGTGGC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TCTGGCCATCTTTTCCTCATGTGGAAGAATTTTCTATCTTTAATAAACTTTTTCTTTGTTTTTTTTTTCCAGAT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GGAGTTTCGCTCTTGTCCCCCAGGCTGGAGTGGTGCAGTGGCACGATCTCAGGTCACTGCAACCTCTGCCTCCT 2220
Query 1 -----------AT-----GGCCT---CCTCCCAAGTAGCTGGGATTACAGG--TGCGTGCCACCACGCTGGGCC 53
|| .|||| ||||||||||||||||||||||||| ||| |||||||.|| ||
Sbjct 2221 GGGTTCAAACGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGC--GCCACCAAGC----CC 2288
Query 54 -GA-----TTTTTGTGTTTTCGGTAGAGACGGGGTTTCACTGTGTTGGCCAGGCTGGTCTTGAACTCCTGACCT 121
|| |||||||||||||.||||||||||.|||||||..|||||||||||||.||||.|||||||||||||
Sbjct 2289 AGACAATTTTTTTGTGTTTTCAGTAGAGACGGAGTTTCACCATGTTGGCCAGGCTAGTCTCGAACTCCTGACCT 2362
Query 122 CAAGTGATCCTCCCACCTTGGCCTCCCAAGGTGCTGGGATTGCAGGCGTGAGCCACCGTGCCCGGCCTC----- 190
||||||||||.|||.|||.||||||||||.|||||.|||||.||||||||||||||.|.||||||||||
Sbjct 2363 CAAGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTAGGATTACAGGCGTGAGCCACTGCGCCCGGCCTCTTTAA 2436
Query 191 ---AGAGT----AGT---TCT----------------------------------------------------- 201
|.|.| ||| |||
Sbjct 2437 TAAATATTTTTAAGTGCATCTTCCCCTTCAGGCTTTGTTTGGAGTCCCAGTGCTACAAACATTGTATTTTTCAC 2510
Query 202 -------------------------------------------------------------------------- 201
Sbjct 2511 AGCAGATGTGTTCCTGAAAAGTGTATAGAAACCTGTTCTGGGAACCTGAATGCTTTTGGAATGCACGGGGAGAG 2584
Query 202 -------------------------------------------------------------------------- 201
Sbjct 2585 TCTGCCAGCTAAAGGACTCCTGGCAACATTCTGTGAAATATGAAACTGGAAAACTGGATTTGTCGAAAACTAAT 2658
Query 202 -------------------------------------------------------------------------- 201
Sbjct 2659 TGTGCCCATTTTCTCACATTTTTGATCCATTGGGGTTTTTTTTTTGTTTTTGTTTTTTTTTTTTTTTGAGTCAA 2732
Query 202 -------------------------------------------------------------------------- 201
Sbjct 2733 GGTCTCACTCTGTCACCCTGGCTGGAGTGCAATGGCACTATCTTGGCTCACTGCAGCCTTGACCTCCTGGACTC 2806
Query 202 -------------------------------------------------------------------------- 201
Sbjct 2807 AAGCAGTCCTCCTACCTCAGCCTCCCTAATAGCCAGGGGCTACAGGCATATACCACCATGCCCAACTAATTTTT 2880
Query 202 -------------------------------------------------------------------------- 201
Sbjct 2881 TAATTTTTTGTAGAGATGAGTGTCACTATGTTGCCCAGGCTTGCCTGGAACTCCTAGCCTCAAGCAGTCTTCTT 2954
Query 202 -------------------------------------------------------------------------- 201
Sbjct 2955 GCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTCCACCCAGCCCAGATTAAATGTTTTTATTTC 3028
Query 202 -------------------------------------------------------------------------- 201
Sbjct 3029 TACCTGCCATCATTGGTCTTTACTAAGTGAAGTGACTTCTTTCTTTAACAATAAATAGAATTGGTATACTAAGC 3102
Query 202 --- 201
Sbjct 3103 AAA 3105
