Construct: ORF ccsbBroadEn_13787
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016705.1_s300c1, BRDN0000390016
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 285676 | ZNF454 | zinc finger protein 454 | NM_001323307.2 | 26.6% | 1.7% | (many diffs) |
| 2 | human | 285676 | ZNF454 | zinc finger protein 454 | NM_001323308.2 | 26.6% | 1.7% | (many diffs) |
| 3 | human | 285676 | ZNF454 | zinc finger protein 454 | NM_001323309.2 | 26.6% | 1.7% | (many diffs) |
| 4 | human | 285676 | ZNF454 | zinc finger protein 454 | NM_001323310.2 | 26.6% | 1.7% | (many diffs) |
| 5 | human | 725 | C4BPB | complement component 4 bind... | XM_005273255.2 | 14.3% | 5.5% | (many diffs) |
| 6 | human | 387723 | C10orf143 | chromosome 10 open reading ... | NR_034125.1 | 6.5% | (many diffs) | |
| 7 | human | 114818278 | ZNF71-SMIM17 | ZNF71-SMIM17 readthrough (N... | NR_163263.1 | 6.2% | (many diffs) | |
| 8 | human | 114818278 | ZNF71-SMIM17 | ZNF71-SMIM17 readthrough (N... | NR_163262.1 | 5.9% | (many diffs) | |
| 9 | human | 54901 | CDKAL1 | CDK5 regulatory subunit ass... | XR_001743501.1 | 5.8% | (many diffs) | |
| 10 | human | 54901 | CDKAL1 | CDK5 regulatory subunit ass... | XR_001743500.1 | 5.6% | (many diffs) | |
| 11 | human | 55131 | RBM28 | RNA binding motif protein 28 | XR_001744830.1 | 1.8% | (many diffs) | |
| 12 | human | 79786 | KLHL36 | kelch like family member 36 | XR_933433.3 | 1.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 267
- ORF length:
- 201
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CTCCTCCCAA GTAGCTGGGA TTACAGGTGC GTGCCACCAC GCTGGGCCGA 121 TTTTTGTGTT TTCGGTAGAG ACGGGGTTTC ACTGTGTTGG CCAGGCTGGT CTTGAACTCC 181 TGACCTCAAG TGATCCTCCC ACCTTGGCCT CCCAAGGTGC TGGGATTGCA GGCGTGAGCC 241 ACCGTGCCCG GCCTCAGAGT AGTTCTTACC CAACTTTCTT GTACAAAGTt ggcattataa 301 gaaagcattg cttatcaatt tgttgcaacg aac