Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13787
- Subject:
- XR_001743501.1
- Aligned Length:
- 3048
- Identities:
- 177
- Gaps:
- 2853
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAATAAACGTGGCGGGACGTATGTGTCATGGCGCTCTCCATCTAAAGTCTGTGCAGCTTCCGGAGAGTGGCGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTGATTTTCTCACTTTGGACTGGTTTTTACTTCCCGACTTCTGGACTCATCTTTCAAGAGGACTTTAGACTAAT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGCAGATAATTAAGAGAATATGCCTTCTGCATCCTGTGATACACTACTGGATGACATCGAAGATATCGTGTCTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGGAAGATTCAAAACCACAAGATAGGCATTTTGTAAGAAAGGATGTTGTCCCGAAGGTACGAAGGCGAAATACC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAAAAATATTTGCAAGAGGAAGAAAACAGTCCACCAAGTGACAGCACTATTCCAGGCATACAGAAAATTTGGAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACGAACATGGGGTTGTTCTCATAATAATTCAGATGGAGAATATATGGCTGGACAGCTAGCTGCTTATGGCTATA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AAATTACAGAAAATGCATCCGATGCAGATTTATGGCTCCTGAACAGTTGCACTGTAAAAAACCCAGCTGAAGAC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CACTTTAGAAACTCAATTAAAAAAGCTCAAGAGGAGAACAAGAAAATCGTACTGGCTGGATGCGTTCCTCAAGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCAGCCTCGCCAGGACTACCTTAAGGGACTGAGTATCATTGGGGTTCAGCAGATAGATCGTGTGGTAGAAGTTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGGAGGAGACAATTAAAGGTCACTCTGTGAGACTGCTGGGTCAGAAAAAGGATAATGGAAGGCGGCTTGGGGGA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCACGATTGGATTTGCCGAAGATTAGGAAGAATCCACTGATAGAAATCATTTCCATCAATACCGGGTGTCTCAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGCTTGTACCTACTGCAAAACTAAACACGCCAGAGGAAATTTGGCCAGTTATCCAATTGATGAACTAGTAGATA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GAGCCAAACAATCTTTTCAAGGAAATGGCAAAAATCCTTAATCACCCCAGAGTCTACGCTTTTCTGCACATACC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGTCCAGTCTGCCTCCGACAGCGTACTCATGGAAATGAAAAGAGAATACTGTGTGGCTGACTTCAAAAGAGTAG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGGATTTTCTGAAAGAGAAAGTTCCTGGAATAACTATTGCTACAGATATTATCTGTGGTTTTCCTGGAGAAACA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GATCAGGATTTTCAAGAAACAGTGAAACTTGTTGAAGAGTACAAATTCCCAAGCCTGTTTATTAACCAATTTTA 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CCCAAGACCAGGAACTCCTGCTGCAAAAATGGAACAAGTTCCAGCACAAGTGATTGGTGAAAGACAACAAGTGT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TAGTAACAGAAGAATCTTTTGATTCCAAGTTTTATGTTGCACACAATCAATTCTATGAGCAGGTTTTAGTGCCA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AAGAACCCTGCGTTCATGGGGAAGATGGTTGAAGTGGACATCTATGAATCAGGCAAACATTTTATGAAAGGGCA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GCCAGTATCTGATGCCAAAGTGTACACGCCCTCCATCAGCAAACCGCTAGCAAAGGGAGAAGTCTCGGGTTTGA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CAAAGGACTTCAGAAATGGGCTTGGGAACCAGCTGAGTTCAGGATCCCACACCTCTGCTGCATCTCAGTGTGAC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 TCAGCGAGTTCCAGAATGGTGCTGCCCATGCCAAGGCTACATCAAGACTGTGCGCTGAGGATGTCCGTGGGCTT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GGCTCTGCTGGGTCTTCTTTTTGCTTTTTTTGTCAAGGTCTATAATTAGAATACAACTAATGGAAACATCTATA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AAGAAGAATACATTTCTAATTAAAATCTTCAATGAACAGGAAAGCGACATCTCCATTCTCCAAGGGCAATAATT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TGTACTGGTCATGCTGCCTCCTTCTCAGCCACTCTTCTTAATGAGGCTCCCCCTGTCTCACATTGAGTTGGGCC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CATTGGTTATTTGACCTAAAACCTAATCACCGCTACCATAGCACATCCTTCAAATTAAACTGCTTTTGGTTTAC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TTTTAGCAAGAAATGCAAGCGGTTGCATTTTTTTCTGTTTGTTTCAATCTCTAATCTTTAAGTCAGAACCTAAT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TGTACAGTGGCTCTGGCCATCTTTTCCTCATGTGGAAGAATTTTCTATCTTTAATAAACTTTTTCTTTGTTTTT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TTTTTCCAGATGGAGTTTCGCTCTTGTCCCCCAGGCTGGAGTGGTGCAGTGGCACGATCTCAGGTCACTGCAAC 2146
Query 1 ----------------------AT-----GGCCT---CCTCCCAAGTAGCTGGGATTACAGG--TGCGTGCCAC 42
|| .|||| ||||||||||||||||||||||||| ||| |||||
Sbjct 2147 CTCTGCCTCCTGGGTTCAAACGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGC--GCCAC 2218
Query 43 CACGCTGGGCC-GA-----TTTTTGTGTTTTCGGTAGAGACGGGGTTTCACTGTGTTGGCCAGGCTGGTCTTGA 110
||.|| || || |||||||||||||.||||||||||.|||||||..|||||||||||||.||||.||
Sbjct 2219 CAAGC----CCAGACAATTTTTTTGTGTTTTCAGTAGAGACGGAGTTTCACCATGTTGGCCAGGCTAGTCTCGA 2288
Query 111 ACTCCTGACCTCAAGTGATCCTCCCACCTTGGCCTCCCAAGGTGCTGGGATTGCAGGCGTGAGCCACCGTGCCC 184
|||||||||||||||||||||.|||.|||.||||||||||.|||||.|||||.||||||||||||||.|.||||
Sbjct 2289 ACTCCTGACCTCAAGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTAGGATTACAGGCGTGAGCCACTGCGCCC 2362
Query 185 GGCCTC--------AGAGT----AGT---TCT------------------------------------------ 201
|||||| |.|.| ||| |||
Sbjct 2363 GGCCTCTTTAATAAATATTTTTAAGTGCATCTTCCCCTTCAGGCTTTGTTTGGAGTCCCAGTGCTACAAACATT 2436
Query 202 -------------------------------------------------------------------------- 201
Sbjct 2437 GTATTTTTCACAGCAGATGTGTTCCTGAAAAGTGTATAGAAACCTGTTCTGGGAACCTGAATGCTTTTGGAATG 2510
Query 202 -------------------------------------------------------------------------- 201
Sbjct 2511 CACGGGGAGAGTCTGCCAGCTAAAGGACTCCTGGCAACATTCTGTGAAATATGAAACTGGAAAACTGGATTTGT 2584
Query 202 -------------------------------------------------------------------------- 201
Sbjct 2585 CGAAAACTAATTGTGCCCATTTTCTCACATTTTTGATCCATTGGGGTTTTTTTTTTGTTTTTGTTTTTTTTTTT 2658
Query 202 -------------------------------------------------------------------------- 201
Sbjct 2659 TTTTGAGTCAAGGTCTCACTCTGTCACCCTGGCTGGAGTGCAATGGCACTATCTTGGCTCACTGCAGCCTTGAC 2732
Query 202 -------------------------------------------------------------------------- 201
Sbjct 2733 CTCCTGGACTCAAGCAGTCCTCCTACCTCAGCCTCCCTAATAGCCAGGGGCTACAGGCATATACCACCATGCCC 2806
Query 202 -------------------------------------------------------------------------- 201
Sbjct 2807 AACTAATTTTTTAATTTTTTGTAGAGATGAGTGTCACTATGTTGCCCAGGCTTGCCTGGAACTCCTAGCCTCAA 2880
Query 202 -------------------------------------------------------------------------- 201
Sbjct 2881 GCAGTCTTCTTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTCCACCCAGCCCAGATTAAAT 2954
Query 202 -------------------------------------------------------------------------- 201
Sbjct 2955 GTTTTTATTTCTACCTGCCATCATTGGTCTTTACTAAGTGAAGTGACTTCTTTCTTTAACAATAAATAGAATTG 3028
Query 202 -------------- 201
Sbjct 3029 GTATACTAAGCAAA 3042
