Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13797
- Subject:
- XR_001747992.1
- Aligned Length:
- 6830
- Identities:
- 163
- Gaps:
- 6646
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CACACGTACACACACACACACACACACACACACACACACACTACATATTTTTGATGTTATCTCAAATGTCTCTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AACCTTTGTTCATTTTTCTCCATTCTTTTTTCCTTTCTATCCCTTAGACTGTATAATATCAATTTACATATCTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TAATTCACAGATTCTTTCTTCTGCCTGCTCAGATCTGCTGTTGAGCCCTTCTAGTAAATTTTTCATTTCAGCTA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCATACTACTCAACTCCAGAATTTATATTTGGTTCTTGAAAAAAATATATAATTTCTATCTCCTTGTTGATATT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CATTACCTGATAAGATATTATTCTCATACCTTTTTCTAGTTCTTTGGATATGGTTTTCTTTACTTCTTTGAATG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TATATAGAATAGCTGATTTAAAGTTTTCATCTTATAAGTTCAATATATGGGCTTCAGGGACAGTTTTTATCAAT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TATTTTTTCCCCCGGTGTATGTGCCTTACTTTCTTGTTTCTTTGTGTGCCTCATAATTTCTTATTGAAAACTGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATTTTAAATAACATAATATAATACAGCAACTTTGGAAATAACCTTCTCTCCCTTCCTCAGGGTTTGTTGTTGTT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GATGTTGCTTCTTTGTGTGTTTAGTGACTTTTCTGAGCTAATTCTGCAAAGTCTGTGTTTTTTGTCATGTGTGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CCACTGAAATCTCTCTCTGCTTAGTGTTCAGCTAGTAATTAGACAGAGAGTTTCTTGATGCTTGAGACCAATAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GTCACCTTGTTTTTGCAGAGTGGCTCTGTGTGTATGTTGGGACATGCCTTCAACTCTCAGACAGGACATTGACA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ACTCCACCTTAGCCTTCCTGCTTGTGCAGAGCCTTAAGCTTAGCCCAGGGTGAGAGCTCAGGACCTTCCTTAGT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TTTTCCTGCACATGTGCACAGCCCTGGGCATGTGCACCCTCCTGTGCGTACATATGGCTTTCTATATTCCTTGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GATATTTCAGAGCCTTTCAAGGCCCTTTATAGATATTTTATTCCCCCACATTTTCTTTTTAAGCTTTTTGTTTA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCCCTTTTTTTTTTTTTGCCTCAACTGTTATCCATTGTTTTAGGCAGCCACAAAGTCCAACAATTGTCTCTAGT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TGTTTTCAACAAATACCCTTAAGGAAAAAGCTGTTCACTCCAGGCAAGCTTTGAGACAGGTGAAATAAAGACAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCTTGCAAATGGTATCTTCCAGGGAACCACTAGACAGGTCAAATAATTACAACTCTCTGGGAATGAGGCTTTGA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AGGAACTCCAAGGCTGTTCTACCCCTTCTTGTAGCTGCCAGGCTGCTGGTTTCCATGATGATTGTGGTTTGTTG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GTTTTCAAAGCTACTGCAGAGTTGGGGTGAGGGGGATGGAATTGGAGCAAGTTAAAATGCCACAAGGCTCACTC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TTCTTTCTATAATTATGTCATTTTTTTTCTTGAACGAAGACTTCCCAGATTGCTATAAACTTTTGATTAATTTC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CAGAGTTCTGAAAAAATTGATTCTCACCATTTTTTGCCATTTTTCTCATTGCTTTTAGGGGGGAGGAAATTTTC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AGAGGATTTTACTCCTACCATTTTCATTGACATTACGTGCAATATATTTTAATTACCCTTCTTTGTGATTGCTT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TGTCACTTCTCAAAACTCAGTTCAAATGTCTCCTCCATTGCAAAGCCCTCTTCTTTGTATCCTCAGGGCAGCTA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TTCCTCTATTCTCCTATACCTCTGGGTTTATGTCTTTGTTATTTCACTTTTCATAATAACAGTTACTTACATCT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GTTTCTATCCCTTTTTCCAGTCTGTAAGCACCCAGTCTGTGACTTGTTCATCCTCCATGCCCAGGCTAGTTTCT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 GACACACGGTAGATATTCAGGTTTGTAGTCTGAAGAGTATTGTCCTAGGAGACCTCAGAGCCTAGCCAAGGGCT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TCTGAGTTCCAGCCACCATTTCTCTCCTTCTTCTATAATTCACAGCTGACCTCTATCTCTTCATTGTCTTATGT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GTGCTCTGGTGTGATGAGAGTAAGTTCAGAATTGACACACTGAGTGTATGATATGGTTTGGATCTGTGTCCCAA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CCCAAATCTCATGTCAAATTATAATCCTCAATGTTAAAAGTGGACTCTGATGGGAGGTGATTTGATCATGGGAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TGGATCCTTCATGATCAAGAAACCTTCATGATTCATCATCCACTTGGTGCTATTCTCGTGATAGAGTTCTCATG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AGATCTGGTTGTTTAAAAGTGTGTGGCACCTCCCCCTTCTCTCTCTTGCTCTTGCTCCTGCCATGTTAGAGGCC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TTGCTCCCCCTTTTTCTTTCACCATGATTGGAAGCTTCCTGAGGCCTCCCCAGAAGCAGAAGTCACTGTGCTTC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CTGTACAGCCTGTGGAACAGTGAGAACTTCTTTTCTCTTGAAATTGTCCAGTCTTAGGTATTTATTTATAGCAG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TGCAAGAATTGACTAATACAGTGTATGAGGAAAATAGGGAGCAAAAAGTTAAATCCTGTGTGGGTGACATTCAG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CAACAACAACAACAACAACAACAACAATAATAATAGCAGCTACTGTTTGCTGAATACAGTCTGTGCTAGACACC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AGGCTATGGGCTTTATAGGCAATATCTCAATGAATTCTGACATCAACCCTATGAGGCATGTACTATTATCCTCA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TTTTACAGGTGAGGCTGAGTAAGGGAAGTGGGAGAACTGAGGTTGGATGAAGGCCTGACTCTAAAGCCTATATT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CTTAACTGTCCCTTCTGAGGGGTTTTTGAGCAGCCAGTTGGAGGAAAGGAAGCCCCACCTGTGTTTGCCTTCCC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CAGGACCTATTCTGCCTCCTTGTCTAAAGAGATGTGCCTGCTCCCAGGTGTGTTTAGCCCCGTGTGGGCTCACT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TGGGTCACCTTGTGCTTTGAAACAAGATAGCACTGAGGGCTCCTGCTGCAACTGGCTCCCAGGGCAGACAGGGG 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TAGAGGCCCCACTTCCCTGGCATTGGGGAGACAGATGTGGCCCTCGGGCAAGAGGTGACAAAGATCTTCCATCA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TCACCCCAACAATTCCAACATGGTGACAGCCCCAGACTGCTAGAAAAGCCAACCCACATGGAGGCGAGATAAAA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TCCAGAGGGCTCAGAAACATTTCAACAAATGCTAATATCGGTCTCTCCAATACAGCTCTGTCAGCAGGAAGGGA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GAATTCTGCCAGCATGCATGCATGGGGCACACTTTTTGGCACAAGGGACCTTGTTGCTAAGCAACAGTAGTTGG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 CCTCCCCTCCTCCCCATAACCTTTTCCTCTGTTTCTGAGTTTCCAGTTAGCAGATGGGAGGGGCTGGGGTTGCC 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 TAGCCCAGCCCAGCCCTTGTCCCCCTTTCCTGCAACAAGGGGCCTATTCATGGGTCCTCAGCAGAGTTCATTGT 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 CTCTGTGGCGCGTGTCTGTGTGAGTGTTGGAGTAGGGATACAGGGAGGGGCCATGTGCGAACCAGGGAGACCTC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 ATCTTCCAACCAAGCTTGCTGGGCTAGCTTTAATCAATGCTGGCCTGAGAACAGGAGCGGAACATTGCCTAGTA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GACCCTGAGGCTTTACAACAGTGCCACTGACCCCTATGTTTCTCAGGCAGTGTGCTGGCGTTCCATGCGACGTG 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 GCTGTGCAGTGCTGGGAGCCCTGGGGCTGCTGGCCGGTGCAGGTGTTGGCTCATGGCTCCTAGTGCTGTATCTG 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 TGTCCTGCTGCCTCTCAGCCCATTTCCGGGACCTTGCAGGATGAGGAGATAACTTTGAGCTGCTCAGAGGCCAG 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 CGCTGAGGAAGCTCTGCTCCCTGCACTTCCCAAAACAGTATCTTTCAGAATAAACAGCGAAGACTTCTTGCTGG 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 AAGCGCAAGTGAGGGATCAGCCACGCTGGCTCCTGGTCTGCCATGAGGGCTGGAGCCCCGCCCTGGGGCTGCAG 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 ATCTGCTGGAGCCTTGGGCATCTCAGACTCACTCACCACAAGGGAGTAAACCTCACTGACATCAAACTCAACAG 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 TTCCCAGGAGTTTGCTCAGCTCTCTCCTAGACTGGGAGGCTTCCTGGAGGAGGCGTGGCAGCCCAGGAACAACT 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 GCACTTCTGGTCAAGTTGTTTCCCTCAGATGCTCTGAGTGTGGAGCGAGGCCCCTGGCTTCCCGGATAGTTGGT 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 GGGCAGTCTGTGGCTCCTGGGCGCTGGCCGTGGCAGGCCAGCGTGGCCCTGGGCTTCCGGCACACGTGTGGGGG 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 CTCTGTGCTAGCGCCACGCTGGGTGGTGACTGCTGCACATTGTATGCACAGGCAAGTCTCTGTGGCTGCTGAGG 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 ACAGAGAGCCTCAGTTGCCCTTTCTGTTCGGCTGTTGGTATGTCCTGTATCAAATGTTCGTGTCCAACTGTCTC 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 CAGCTTTTTGCTCCAAAAGGGTAAGACTGGTGTTTGTGAAGTTCTCTCATTCAGTATCAAGAACAGATCTGCAC 4440
Query 1 -----------------------------------------------------------------ATGGAGTCT 9
|..||||||
Sbjct 4441 AAATAACAGTAATAATATGAAGATTTGTTCTTTATATTCATCAGTTTTTTTTTTTTTTTTTTGAGACAGAGTCT 4514
Query 10 CACTGTATTGCCCAGGCTGGAGTTCAGTGGCACCATCTCGGCTTACTGCAGCCTCCACCTCCCGGGTTCAAGCG 83
||||.|.||||||||||||||||.|||||||.|.||||.||||.||||||.|||.|||||||.|||||||||||
Sbjct 4515 CACTTTGTTGCCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTTCACCTCCTGGGTTCAAGCG 4588
Query 84 ATTCTCCTGCCTCAGCCTCCCGGGTACCTGGGGCTACAGGCGCCCGCTACCACACC--------CAGCTAA-TT 148
|||||..|||||||| ||||| |||| ||||||| ||
Sbjct 4589 ATTCTTGTGCCTCAG------------CTGGG--------------------CACCACTATGTTCAGCTAATTT 4630
Query 149 TTTGTATTTTTAATAGACATGAGGTTTCGCCATGTTGGCCAGGCTGTTCTCGAACTCCTGACCTCAAA------ 216
||||||||||||.||||.|||.||||||||||||||||||.|||||.|||||||||||||||||||..
Sbjct 4631 TTTGTATTTTTAGTAGAGATGGGGTTTCGCCATGTTGGCCTGGCTGGTCTCGAACTCCTGACCTCAGGTGATCT 4704
Query 217 -------------------------------------------------------------------------- 216
Sbjct 4705 GCCTGCCTCAGCCTCCCAAAGTGCTGGGATAACAGGCGTGAGCCACCGTGCCTGGCCTCATTAGCTTTTAAGTG 4778
Query 217 -------------------------------------------------------------------------- 216
Sbjct 4779 TTAAAAATACTTTCACATTCACAGTATCCTGTGTTTCTTCAGGCTTATCTTTGGTTCAATCATTTTCCATGTAA 4852
Query 217 -------------------------------------------------------------------------- 216
Sbjct 4853 TTATTTGGTTAATATGTTTCTTCCCCTTTAGATGGGAAGCTCTGCAGGAGCAGGGACTCTCAGTCTTATTTACC 4926
Query 217 -------------------------------------------------------------------------- 216
Sbjct 4927 ACTAAATCTCTTTGTAGATTTATCCACTGCTGTGTCCCCAGGGTCTAGAACAGTCCCTGGAATATAGTAGGTGC 5000
Query 217 -------------------------------------------------------------------------- 216
Sbjct 5001 TTAATAAATATGACTTGGAGGAATGAATGAATGATGAGTGAATGAGCTCTTTGATCTTCTCTTGGTGCCGGACA 5074
Query 217 -------------------------------------------------------------------------- 216
Sbjct 5075 GGGCAGAGAGTGTAATCCCCATTTTACCGAGGCTGAGAGGGAGAAGTGCCTCTCCCATGATCACACACAGTAAG 5148
Query 217 -------------------------------------------------------------------------- 216
Sbjct 5149 TTGAGAGATGGGACCAGGGGAAGTTTTTCCAACACAAGGCCCTCTATGTGTTTGTTATAAAACTTGGAGGGAAG 5222
Query 217 -------------------------------------------------------------------------- 216
Sbjct 5223 TTATGCAGGAAAGAGGGAGTGGTGGTTGCAGATGACCCATAGTCTTCTCTATCCATCAGTCCTGCAGCATTTAT 5296
Query 217 -------------------------------------------------------------------------- 216
Sbjct 5297 TAAGCACCTACTGCATGCCCAGTGTCTTGCCGGCTGCTGGGGTGATACTAAGAGGCATAGTCTGTGGGGCCTGG 5370
Query 217 -------------------------------------------------------------------------- 216
Sbjct 5371 GAGCTCACCGCCTGCTGACGGCCCCCCCACCAATGGCTGCTCTGGCCAGCTTCCTCCACCTGCTACCTTGCTTA 5444
Query 217 -------------------------------------------------------------------------- 216
Sbjct 5445 GGAACACCTCTTCTGCCCCTTCCTTCCCCGCTCAGCATGGCCCCTGTGTGCAGTTTCAGGCTGGCCCGCCTGTC 5518
Query 217 -------------------------------------------------------------------------- 216
Sbjct 5519 CAGCTGGCGGGTTCATGCGGGGCTGGTCAGCCACAGTGCCGTCAGGCCCCACCAAGGGGCTCTGGTGGAGAGGA 5592
Query 217 -------------------------------------------------------------------------- 216
Sbjct 5593 TTATCCCACACCCCCTCTACAGTGCCCAGAATCATGACTACGACGTCGCCCTCCTGAGGCTCCAGACCGCTCTC 5666
Query 217 -------------------------------------------------------------------------- 216
Sbjct 5667 AACTTCTCAGACACTGTGGGCGCTGTGTGCCTGCCGGCCAAGGAACAGCATTTTCCGAAGGGCTCGCGGTGCTG 5740
Query 217 -------------------------------------------------------------------------- 216
Sbjct 5741 GGTGTCTGGCTGGGGCCACACCCACCCTAGCCATACTTACAGCTCGGATATGCTCCAGGACACGGTGGTGCCCT 5814
Query 217 -------------------------------------------------------------------------- 216
Sbjct 5815 TGTTCAGCACTCAGCTCTGCAACAGCTCTTGCGTGTACAGCGGAGCCCTCACCCCCCGCATGCTTTGCGCTGGC 5888
Query 217 -------------------------------------------------------------------------- 216
Sbjct 5889 TACCTGGACGGAAGGGCTGATGCATGCCAGGGAGATAGCGGGGGCCCCCTAGTGTGCCCAGATGGGGACACATG 5962
Query 217 -------------------------------------------------------------------------- 216
Sbjct 5963 GCGCCTAGTGGGGGTGGTCAGCTGGGGGCGTGGCTGCGCAGAGCCCAATCACCCAGGTGTCTACGCCAAGGTAG 6036
Query 217 -------------------------------------------------------------------------- 216
Sbjct 6037 CTGAGTTTCTGGACTGGATCCATGACACTGCTCAGGACTCCCTCCTCTGAGTCCTGCTGTTTCCTCCAGTCTCA 6110
Query 217 -------------------------------------------------------------------------- 216
Sbjct 6111 CTGCACACCACTGCCTCATGCTTCCTGGGGCCTCCAGCAGCTCCACTAATGGAGGAGAGGCAGTAGCCTCCGAC 6184
Query 217 -------------------------------------------------------------------------- 216
Sbjct 6185 ACAGAACGCATGGACCTCCTACTACTGTGTGTGAGGAACAGTCACTACCCACTGGCCAGCCACCCAGCCAACAG 6258
Query 217 -------------------------------------------------------------------------- 216
Sbjct 6259 GTCTCTCCTCTTGGGCCCTGATTTCAGAGTCCTCTTTCTCACTAGAGACTCAATGACAGAAGAGAGGCTGGGAC 6332
Query 217 -------------------------------------------------------------------------- 216
Sbjct 6333 TTGGTTGGGCATGCTGTGGTTGCTGAGGGATGAGGGGGAGGAGAGAGGTAGGAGCTGGAGATGAAGAGGCTGCT 6406
Query 217 -------------------------------------------------------------------------- 216
Sbjct 6407 AGAAGCAGCAGGAAGCCTGCCCTTCTGCCCTCTCCCCTCCCTGCCCCTGTGTGAGTCTTTTGGGAGGGTGCTGG 6480
Query 217 -------------------------------------------------------------------------- 216
Sbjct 6481 GAGGTGCCCCCCGTCCCACCTTTTTCCTGTGCTCTAGGTGGGCTAAGTGCCTCCCTAGAGGACTCCATGGCTGA 6554
Query 217 -------------------------------------------------------------------------- 216
Sbjct 6555 GAGGCTCCTGGGCAGATGGGGTCAAGGCTGGGCCAGCCCAGATGAAGCCTATGGGAGTCAGGACCCTCTCCACT 6628
Query 217 -------------------------------------------------------------------------- 216
Sbjct 6629 CTCCCTCTCCACTCCCCTTCCTGTTCTCACCTGGCTGTGGCTGGCCCTGTGTGGGGTGGGTACACTGGAAAACA 6702
Query 217 -------------------------------------------------------------------------- 216
Sbjct 6703 AGAAGGTTGGAGTTGGTCTAGGACATTGGTTTTAAATGACAGTTCTGTGAACTGGTCCAAGGAGTTCTGTTATT 6776
Query 217 ---------------------- 216
Sbjct 6777 AAAGTGATATATGGTCTTGGTC 6798
