Construct: ORF ccsbBroadEn_13797
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004167.1_s300c1, BRDN0000391053
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 124801 | LSM12 | LSM12 homolog | NM_001369484.1 | 23.8% | 2.4% | (many diffs) |
| 2 | human | 51091 | SEPSECS | Sep (O-phosphoserine) tRNA:... | XM_017008277.1 | 10.5% | 2.6% | (many diffs) |
| 3 | human | 101929130 | LOC101929130 | uncharacterized LOC101929130 | NR_135551.1 | 9.4% | (many diffs) | |
| 4 | human | 83891 | SNX25 | sorting nexin 25 | XM_017008687.1 | 8.7% | 6.7% | (many diffs) |
| 5 | human | 284023 | RNF227 | ring finger protein 227 | NR_152444.1 | 7.7% | (many diffs) | |
| 6 | human | 79979 | TRMT2B | tRNA methyltransferase 2 ho... | XM_017029872.1 | 6.8% | 4% | (many diffs) |
| 7 | human | 79979 | TRMT2B | tRNA methyltransferase 2 ho... | XM_017029873.1 | 6.8% | 4% | (many diffs) |
| 8 | human | 79979 | TRMT2B | tRNA methyltransferase 2 ho... | XM_017029874.1 | 6.8% | 4% | (many diffs) |
| 9 | human | 79979 | TRMT2B | tRNA methyltransferase 2 ho... | XM_017029875.1 | 6.8% | 4% | (many diffs) |
| 10 | human | 79979 | TRMT2B | tRNA methyltransferase 2 ho... | XM_017029858.1 | 5.2% | 3.7% | (many diffs) |
| 11 | human | 79979 | TRMT2B | tRNA methyltransferase 2 ho... | XM_017029859.1 | 5.2% | 3.7% | (many diffs) |
| 12 | human | 79979 | TRMT2B | tRNA methyltransferase 2 ho... | XM_017029860.1 | 5.2% | 3.7% | (many diffs) |
| 13 | human | 79979 | TRMT2B | tRNA methyltransferase 2 ho... | XM_017029861.1 | 5.2% | 3.7% | (many diffs) |
| 14 | human | 100289019 | SLC25A25-AS1 | SLC25A25 antisense RNA 1 | NR_033374.1 | 4.8% | (many diffs) | |
| 15 | human | 23137 | SMC5 | structural maintenance of c... | XR_001746256.1 | 3.1% | (many diffs) | |
| 16 | human | 80975 | TMPRSS5 | transmembrane serine protea... | XR_001747992.1 | 2.3% | (many diffs) | |
| 17 | human | 80975 | TMPRSS5 | transmembrane serine protea... | XR_001747991.1 | 2.3% | (many diffs) | |
| 18 | human | 79815 | NIPAL2 | NIPA like domain containing 2 | XR_001745599.2 | 2.3% | (many diffs) | |
| 19 | human | 79815 | NIPAL2 | NIPA like domain containing 2 | XR_001745598.2 | 2.3% | (many diffs) | |
| 20 | human | 80975 | TMPRSS5 | transmembrane serine protea... | XR_001747990.1 | 2.3% | (many diffs) | |
| 21 | human | 114004397 | CA5BP1-CA5B | CA5BP1-CA5B readthrough | NR_160544.1 | 2.3% | (many diffs) | |
| 22 | human | 101928421 | LOC101928421 | uncharacterized LOC101928421 | XR_927171.3 | 2% | (many diffs) | |
| 23 | human | 101928421 | LOC101928421 | uncharacterized LOC101928421 | XR_927172.3 | 2% | (many diffs) | |
| 24 | human | 101928421 | LOC101928421 | uncharacterized LOC101928421 | XR_242157.4 | 2% | (many diffs) | |
| 25 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XR_944320.3 | 2% | (many diffs) | |
| 26 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | NR_146198.2 | 2% | (many diffs) | |
| 27 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XR_944315.3 | 1.9% | (many diffs) | |
| 28 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XR_001742047.2 | 1.9% | (many diffs) | |
| 29 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XR_001742048.2 | 1.9% | (many diffs) | |
| 30 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XR_944314.3 | 1.9% | (many diffs) | |
| 31 | human | 23092 | ARHGAP26 | Rho GTPase activating prote... | XR_944311.3 | 1.8% | (many diffs) | |
| 32 | human | 101928421 | LOC101928421 | uncharacterized LOC101928421 | XR_001745169.2 | 1.6% | (many diffs) | |
| 33 | human | 101928421 | LOC101928421 | uncharacterized LOC101928421 | XR_001745168.2 | 1.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 282
- ORF length:
- 216
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GTCTCACTGT ATTGCCCAGG CTGGAGTTCA GTGGCACCAT CTCGGCTTAC 121 TGCAGCCTCC ACCTCCCGGG TTCAAGCGAT TCTCCTGCCT CAGCCTCCCG GGTACCTGGG 181 GCTACAGGCG CCCGCTACCA CACCCAGCTA ATTTTTGTAT TTTTAATAGA CATGAGGTTT 241 CGCCATGTTG GCCAGGCTGT TCTCGAACTC CTGACCTCAA ATGCCCAACT TTCTTGTACA 301 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac