Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13802
- Subject:
- NR_135520.1
- Aligned Length:
- 2914
- Identities:
- 652
- Gaps:
- 2182
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAGTGACTGTAGGTTTAGATGAATGGAAAATGAACTTGCCAGTTCACAGCTATGTCCTTCCCAATTTAGGAGGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TAAGGGCAGGAAAAACATGAGAAACTCTTTTGAGAAGCTGCACAAGCTGACATGGAGGATCAAGGATTTCAAAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCTTTGAATATAAAGAGGTGTCAGACTTACATCAGAGCCTGAGACTTGACATGCCTATTTTTGCACTCGCTCAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTTTCAAATTTCATAGGCATTGCTCCCTCCAAATCACCGCTCTTCTAATTTTATCCTGGAGTGTGCATCCCAGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGACATAAGCTGACACAATTGGGAACTGAAGTTGCTTGAAAAAGCTGGTGGGATCAGCATCATATATCACTATT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCTCAAAGATTATCTGGTCTCTTGATGGCAAATCTACAATATTGAAACCTTTGAAAGAGAAATTGTGTTTTGTG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGTTACATGACTACCGTTTGCATCCAAGGTCTCCTCTGTAGTCAAGAGAAGAATGCAGAAACTACATGTCCAAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AATCTCTTTCCAGACTCTAGACAGCTTATACGTATTTGGACAAGGCAACGTGATGAAGAAATAATATAATTGTA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGATCACCTCTGTCCAGTAGCTGTTATCCAACATCTGCATACTTAGATTTCTGGAGAGATATCCATGAATGACC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATGAAAGTACAGCAAGTGATTTTCAAGCTGCAAACAAATTTTAGCAAGCAAATGGAAGAAGAAAGAGGAGAGTG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GTGGTGTGTGCTTTCCCTTTAATGGCAGAACCCAACAGTCGTACACACCACTTCTACCCTCTTAAGATGGGTCA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GAATCCAGGCCCAATTCCATGTATACATGGAAGAGAGGCTTATTAAAGTAGCCTTCAGTTGCTGGACAGAGTTC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CATCCAAAACTACAGTTAATAGGTAAGTCGAGAACTTACATTAAGTGATAAATGGCAGTCTCTGCCAAGGAAAA 962
Query 1 ---------------------------------------------ATGGCCATACTGCCCAAGGTAATTTATAG 29
||||||||||||||.||.|||||||||||
Sbjct 963 TATTCTTATCCATGCTCATGGATAAGAAGAATCAATATCATGAAAATGGCCATACTGCCAAAAGTAATTTATAG 1036
Query 30 ATTCAATGCCATCCCCATCAAGCTACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATAT 103
|||||||||.||.|||||||||||||||.|||||||||||||||||||.|||||||||||||||||.|||||||
Sbjct 1037 ATTCAATGCTATTCCCATCAAGCTACCATTGACTTTCTTCACAGAATTAGAAAAAACTACTTTAAATTTCATAT 1110
Query 104 GGAACCAAAAAAGAGCCTGCATCACCAAGTCAATCCTAAGGCAAAAGAAAAAAGCTGGAGGCATCACACTACCT 177
||||||||||||||||||||||..|||||.|||||||.||..|||||||.|||||||||||||.||..||||||
Sbjct 1111 GGAACCAAAAAAGAGCCTGCATAGCCAAGACAATCCTCAGCAAAAAGAACAAAGCTGGAGGCAGCATGCTACCT 1184
Query 178 GACTTCAAACTATACTACACGGCTACAGTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCA 251
||||||||||||.||||||..||||||||||||||||||||.||||.||||||||||||||||.|.|||||.||
Sbjct 1185 GACTTCAAACTACACTACAAAGCTACAGTAACCAAAACAGCTTGGTGCTGGTACCAAAACAGATACATAGACCA 1258
Query 252 ATGGAACAGAACAGAGCCCTCAGAAATAATGCCGCATATCTACAACTATCTG-ATCTTTGACAAACCTGACAAA 324
|.||||||||||||||.|||.||||||||..||.||.|||||||||.|| || |.|||||||.||||.||||||
Sbjct 1259 AGGGAACAGAACAGAGGCCTAAGAAATAACACCACACATCTACAACCAT-TGAAACTTTGACTAACCAGACAAA 1331
Query 325 AACAAGCAATGGGGAAAGGATTCCCTATCTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAAAAAGCT 398
|||||||.||||||||||||||||||||.|||||.|||.||.|||.||||||.|||||||.|.||.|.|||.||
Sbjct 1332 AACAAGCCATGGGGAAAGGATTCCCTATTTAATACATGCTGATGGAAAAACTAGCTAGCCGTCTGCAGAAAACT 1405
Query 399 GAAACTGGATCCCTT------------CCTTACACCTTATACAAAAATTAATTCAAGGTGGATTAAAGACTTAA 460
||||||||| |||| .||||||.||||||||||||||||.|||||.|.|||.|||||.||||
Sbjct 1406 GAAACTGGA--CCTTATACAAAAATTAACTTACATCTTATACAAAAATTAACTCAAGATAGATCAAAGATTTAA 1477
Query 461 ACATTAGACCTAAAACCATAAAAACCCTAGAAGAAAACCTTGGCATTACCATTCAGGACATAGGAATGGGCAAG 534
...|.||||||||||||| |||||||||||||||||||||.||||.||||||||||||||||||.||.|.|||.
Sbjct 1478 GTGTAAGACCTAAAACCA-AAAAACCCTAGAAGAAAACCTAGGCAATACCATTCAGGACATAGGCATTGCCAAA 1550
Query 535 CACTTCATGTCTAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAA 608
.||.|.|||...||||.||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 AACCTTATGATGAAAATACCAAAAGGAATGGCAACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAA 1624
Query 609 GAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAGAATGGGAG-AAAATTTTCACA 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||.| |
Sbjct 1625 GAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAGAATGGGAGAAAAATTTTGA-A 1697
Query 682 ACCTACTC-ATCTGACAAAGGGCTAATATCCAGAATTTACAATGAACTCAAACAAATT---------------- 738
|.||| || .||||||||||||||||||||||||||.||.||.|||||.|||||||||
Sbjct 1698 ATCTA-TCTTTCTGACAAAGGGCTAATATCCAGAATCTATAAGGAACTTAAACAAATTTACAAGAAAAAAACAA 1770
Query 739 -------------------------------------------------------------------------- 738
Sbjct 1771 ACAACTCCATCAGAAATTGGGCAAAGGATATGAACAGACACATCTCAAAAGAAGACATTTATGCAGCCACCAAA 1844
Query 739 -------------------------------------------------------------------------- 738
Sbjct 1845 CACATGAGAAAAAGCTCATCATCACTGGTCATTAGAGAAATGCAAATCAAAACCACAATGAGACACCATCTCAC 1918
Query 739 -------------------------------------------------------------------------- 738
Sbjct 1919 ATCAGTTAGAATGGCGATCATTAAAAAGTCAGGAAACAACAGATTCTGGAGAGAATGTGGAGAAATAGAAATGG 1992
Query 739 -------------------------------------------------------------------------- 738
Sbjct 1993 TTTTACACTGTTGGTGGGAGTGTAAATTAGTTCAACCATTGTGGAAGACAGTGTGGTGATTCCTCAAAAATCTA 2066
Query 739 -------------------------------------------------------------------------- 738
Sbjct 2067 GAACTAGAAATAACATTTGACCCTGAAATCACATTACTGGGTATATACCCAAAGATTATAAATCATTCTACTAT 2140
Query 739 -------------------------------------------------------------------------- 738
Sbjct 2141 AAAGACACATGCACACGTATCTTTATTGCAGCACTATTCACAATAGCAAAGATTTAGAACCAACCCAAGTGCCC 2214
Query 739 -------------------------------------------------------------------------- 738
Sbjct 2215 ATCAATGATAGACTGGACTAAGAAAATGTGGCATATGTACACCATGGGATACTATGCAGCCATAAAAAGAATGA 2288
Query 739 -------------------------------------------------------------------------- 738
Sbjct 2289 GTTTATGTCCTTTGCAGGGACATGGATGAAGCTGGAAACCATCATTCTCAGCAAACTAACACAGGAACAGAAAA 2362
Query 739 -------------------------------------------------------------------------- 738
Sbjct 2363 CCAAACACCGCATGTTGTCACTCATAAGTGGGAGTTGAACAATGAGAATATATGGGCACAGGGAGGGGAACATC 2436
Query 739 -------------------------------------------------------------------------- 738
Sbjct 2437 ACACACTGGGGCCTGTCTGGGGGTTGGGGGCAATGGAAAGGATAGCATTAGGTGAAATACGTAATGTAGATGGT 2510
Query 739 -------------------------------------------------------------------------- 738
Sbjct 2511 GGGTTGATGGGTGCAGAAAACCACCATGGCACATGTACACCTATGTAACAAATCTGCATGTTCTGCACATGTAT 2584
Query 739 -------------------------------------------------------------------------- 738
Sbjct 2585 CTTAGAACTTAAGCATAACAAAAAAATATATTTCTGGGCAGAGGAAAAATACTTTGAAATTTACATTTAATCCA 2658
Query 739 -------------------------------------------------------------------------- 738
Sbjct 2659 GTAAAATTTCAGTGCATTAAATTAAAGCTTGTAATATAATAATGATAATAACAGACAGCATTTAAAGAGCACCT 2732
Query 739 -------------------------------------------------------------------------- 738
Sbjct 2733 CTTGTGGATAATCAAGTTATTGAGAAATTATGTGTGTTATCTCTGGGATAAAGATTGCTGCATCCTTATATTCT 2806
Query 739 -------------------------------------------------------------------------- 738
Sbjct 2807 TGTGTATAAACAGACCCTGTATATGTAAAAAAAGGAAAGAGAAAAGTATTTTTAAATGCACTAATTTGTAATTA 2880
Query 739 ---------------------------- 738
Sbjct 2881 CCACATAAACTATTACTCATGGAAGATT 2908
