Construct: ORF ccsbBroadEn_13802
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009869.1_s300c1, BRDN0000387424
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 101926898 | LOC101926898 | uncharacterized LOC101926898 | NR_125837.1 | 45.7% | (many diffs) | |
| 2 | human | 101927374 | LOC101927374 | uncharacterized LOC101927374 | NR_110133.1 | 30.7% | (many diffs) | |
| 3 | human | 101927034 | ROR1-AS1 | ROR1 antisense RNA 1 | NR_110665.1 | 30.6% | (many diffs) | |
| 4 | human | 100885776 | UGDH-AS1 | UGDH antisense RNA 1 | NR_047679.1 | 23.8% | (many diffs) | |
| 5 | human | 100129434 | LOC100129434 | uncharacterized LOC100129434 | NR_125368.1 | 23% | (many diffs) | |
| 6 | human | 105372751 | LINC01684 | long intergenic non-protein... | NR_135520.1 | 22.3% | (many diffs) | |
| 7 | human | 107985041 | LOC107985041 | uncharacterized LOC107985041 | XR_001738122.1 | 19.6% | (many diffs) | |
| 8 | human | 201853 | LINC00504 | long intergenic non-protein... | NR_126435.1 | 14.9% | (many diffs) | |
| 9 | human | 444882 | IGFL4 | IGF like family member 4 | NR_163177.1 | 13.3% | (many diffs) | |
| 10 | human | 444882 | IGFL4 | IGF like family member 4 | NR_163175.1 | 12.3% | (many diffs) | |
| 11 | human | 444882 | IGFL4 | IGF like family member 4 | NR_163176.1 | 12.2% | (many diffs) | |
| 12 | human | 105370518 | LOC105370518 | uncharacterized LOC105370518 | XR_001750784.2 | 9.7% | (many diffs) | |
| 13 | human | 8837 | CFLAR | CASP8 and FADD like apoptos... | NR_147248.2 | 8.7% | (many diffs) | |
| 14 | human | 8837 | CFLAR | CASP8 and FADD like apoptos... | NR_147242.2 | 8.4% | (many diffs) | |
| 15 | human | 8837 | CFLAR | CASP8 and FADD like apoptos... | NR_147245.2 | 8.4% | (many diffs) | |
| 16 | human | 8837 | CFLAR | CASP8 and FADD like apoptos... | NR_147249.2 | 8% | (many diffs) | |
| 17 | human | 8837 | CFLAR | CASP8 and FADD like apoptos... | NR_147243.2 | 7.8% | (many diffs) | |
| 18 | human | 8837 | CFLAR | CASP8 and FADD like apoptos... | NR_147244.2 | 7.8% | (many diffs) | |
| 19 | human | 8837 | CFLAR | CASP8 and FADD like apoptos... | NR_147246.2 | 7.7% | (many diffs) | |
| 20 | human | 8837 | CFLAR | CASP8 and FADD like apoptos... | NR_147253.2 | 7.7% | (many diffs) | |
| 21 | human | 8837 | CFLAR | CASP8 and FADD like apoptos... | NR_147247.2 | 7.6% | (many diffs) | |
| 22 | human | 8837 | CFLAR | CASP8 and FADD like apoptos... | NR_147251.2 | 7.5% | (many diffs) | |
| 23 | human | 8837 | CFLAR | CASP8 and FADD like apoptos... | NR_147250.2 | 5.5% | (many diffs) | |
| 24 | human | 100131257 | LOC100131257 | zinc finger protein 655 pse... | NR_034022.1 | 3.1% | (many diffs) | |
| 25 | human | 10984 | KCNQ1OT1 | KCNQ1 opposite strand/antis... | NR_002728.3 | .7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 804
- ORF length:
- 738
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CATACTGCCC AAGGTAATTT ATAGATTCAA TGCCATCCCC ATCAAGCTAC 121 CAATGACTTT CTTCACAGAA TTGGAAAAAA CTACTTTAAA GTTCATATGG AACCAAAAAA 181 GAGCCTGCAT CACCAAGTCA ATCCTAAGGC AAAAGAAAAA AGCTGGAGGC ATCACACTAC 241 CTGACTTCAA ACTATACTAC ACGGCTACAG TAACCAAAAC AGCATGGTAC TGGTACCAAA 301 ACAGAGATAT AGATCAATGG AACAGAACAG AGCCCTCAGA AATAATGCCG CATATCTACA 361 ACTATCTGAT CTTTGACAAA CCTGACAAAA ACAAGCAATG GGGAAAGGAT TCCCTATCTA 421 ATAAATGGTG CTGGGAAAAC TGGCTAGCCA TATGTAAAAA GCTGAAACTG GATCCCTTCC 481 TTACACCTTA TACAAAAATT AATTCAAGGT GGATTAAAGA CTTAAACATT AGACCTAAAA 541 CCATAAAAAC CCTAGAAGAA AACCTTGGCA TTACCATTCA GGACATAGGA ATGGGCAAGC 601 ACTTCATGTC TAAAACACCA AAAGCAATGG CAACAAAAGC CAAAATTGAC AAATGGGATC 661 TAATTAAACT AAAGAGCTTC TGCACAGCAA AAGAAACTAC CATCAGAGTG AACAGGCAAC 721 CTACAGAATG GGAGAAAATT TTCACAACCT ACTCATCTGA CAAAGGGCTA ATATCCAGAA 781 TTTACAATGA ACTCAAACAA ATTTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa 841 agcattgctt atcaatttgt tgcaacgaac