Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_13802
- Subject:
- XR_001750784.2
- Aligned Length:
- 5204
- Identities:
- 509
- Gaps:
- 4638
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGCTATCTATGATGTCTTCACTTATGGATATATTTATTAACAAGTACTTATTAGCTATTTAACATTTCCTCTAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGAGTGTTATTAATTACAGATGCTGTATTAGTTTCCTAAGGCTGCTGTAACAAATTACCACAAACGTGGTGACT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TAAAACAACAGAAATTTATTCTCTCACGGTTCTGGAGGCCAGAAGTTCAAAATACAGCTGGGACCAAAGGCATC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCTAAGGAAGGATACAGTCCTTGCCTCTTCCAGGGTTCTGTGCCTCCTGTTGGAATGAGCTCACTAACCAGTGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AAACAAACTGTTTATCCTTCTATGATGTTGCAACTGCCTGGGCTTTCTAATGCGTCTTCAGATTTCGGTTTGTA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTCAGAACAAGTGAGAAAAGTTTTACAGCAACTCCACGAAACAAAGCAGACAGGCTCTCCTGAAGCCAAGGAGT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TATGAAAAAGGCAGGCATCGCGCATTGAATCAAGTATGCCATTACCCTCACTCCCATGAACCTGTCTTTCAGCA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CAATCCATGACAGCAAGAAGACAAAGGCTTTGTTACAACAGAACAGAGCGGAGACATCCGTGGCCGTCAGCTTC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTTAAAGCCAGTAAATAAAGGTAATTAGTCAAAGTCCATAGAATAGAAAAGGGAGCAGTTCTTTTAAGAAAGAG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTTCAGCGTCAGACCATCTTCACCAAAAATCCGACTGCATTCCCTAGGAAAGAAAAGAGAAGTTAATATCCAGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TACTGATGGTGACACCTCTTGTCTTATCTGACTCATCGCAGCCATTTTCAGGTCTGGCTCTCTTACCCAGGCTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GAATGCGGTAGCATGATCTTGGCTCACTGCAACCTCCGCCTCCCAGACTCGAGCCATCCTCACACCTCAGCCTC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CTGAGTAGCTGGGACTACAGGCACGCACCACCATGCCAGGCTAGTTTTTGAAATTTTTTTGTAGAGACAGACAG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GATTTCACTCTGTTGCCTAGGCTGGTCTCAAACTCTTAAGCTCAGGTGATCTGCTCACCTTGGCCTCCCAAAGT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GCTGAGATTACAGGCAAGAGCCACTGCACCTGGCTCTGAGGGGCCATTTTAATAAAAATGTTCAAGCTAGCAAT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ACATACAGGCAATAATGGAAGTGATACAATGACTGTACCTATACGACTATGGACTGAAGACAGACTTACCACTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GGAGAATTTTAATTTTTTTCCCACTCGATTGTTCATGAACATTCAAGTATTTATGGGGTAACTGTCATGCTCCA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GGCATTGTATTTTCATGAGTAGTATATGTTTATAATGAAATCTATTTACAGGACTCTAGTACTAGTTTCTTTTC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CAGTTTTAACTGAAATTAGTGTGCCTCAAAGTATTGCAAATCAAAGTAAATTCTAGCCAATGTTTGCCTCACAT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GAATAACCCCAAAAAAGGACCACGTGGAGAGGAGGAGTGACAAAGAATTAGGCACAGGGAGTATAGCCTTAAAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 ATTAAGTTTCATAGTAAATGTGACTTTCAACTGGATGAGAATGTTGGGAGTTGCAGGTCACCGGTTCCAGGAAG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GTTAAAGACATGTGTTGCACACACAGAAACTTGTATTGAAATTTGTTTACTTTCATGTAAGGAGGCTTCCAAAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AGGAAGGATTTTTGTAAAATGAAAGTAAGATTTCCCAAAGATAAATTTTAACTTTAAAGCCTTCTGTAATGTAA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ACAGAAATTACACACGCTCACATACACAGGAAAGTGAACAGTCTCTTTGAAGCCCCACAGCCAATGGGATATTC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TGAATTAGCACCATACATAGAACCAGAGGAAGTTTTCATAGAGCATCCTGGGCACAAAGTTCATTTTCTGTACT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TATAAGGCGATCTGCTCCGTGAGAAAGCTGCCGTGTAGAGCTGGAGTTGAGAGTCGTGGGTTTATCCCATCATT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TACAACTACTGATTGCCTTTTAAAATATGAACACATTTATTAAGAACCACAACAAAACCCATTCCTGATTAAAG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GATATCTTTTTCTTATCACTGGCCCTAGCCAGTGATTGTTCTTCAACCAAGAGCTGGGAGGAGTGCTCCTAAGC 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AAAGATTTTGGATGCAGGAAAGGAACACTCCAATCCCACAGGGAAGACCAACAGATGTGTATTCCAGACAGACA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GAGCCTCACTGGCAGAGCAGCTGGGAAGACGCTGCTGACTGACAGGTGGAGACTGTTCTCACCTGGCTCAACCT 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GTCTTCCAGGTGTTCATTCCCTCGTTCTTCCCCTTTCTTTCCCCTTCTCTCACTGCCGACCTTCTCCCCTTTGT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TACTGTTGTTGTAGAAATTAAAAATGCTCTCCATCTAAATGCCAGGTCACTTGTGTAAAATCCCATACTATTTA 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AGCATTAAACTCTAAGAAACATGAAAACTGAAAAAAAAATATGGATTTTTATGGAGAAGCGAATAACAGTGGGT 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TTCTCTTTGGGATGATGAGATCAGACTTTCTGGGCAAGTGGCATTGACAGGTGGTATAGCTTGAAATGAAGCAT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AGAAGTTGGAGGACACTAATAATTTAGTTATGCTTATTATTAAAACAGCAGCCACTAGTTGTTGAACCCTGTCT 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 ATATGTTAAATAGCATCTTAAGCATATTTTATAGTAAGCATATTTTATAGGTGCCTGACATAGGCAAATATGTC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TTTGGCTCCAGTTTGATGCTATCTAAGATTTTTCCCCTAAGAAAACGTCCTTGTTAATAATATGGTATATATTT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TTTTCTTCCTAAATTTCAAATTCACTTGAGGCAATTGAATTCTCTTGTAGTATATAAATGATTATAAAAAACTA 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 CTTCTAAATACAGTCCTTACCATCTAGATTTGATACTTCATTGAAAATTATTTTGATATTACTGATAAAAAAAT 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 ACTGGAAATGCTTTCATACCATTCTAGAGAAAATAGATTCTGGTGCTATGGGACAAATTCTATTTCCAGTCTTA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CACACTAACTCTATTCTTCCCTTGTTCAGTCATGAGAGCTTCGGGAGTAACTTCTGGAGTAACTTCTTGGCAGA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TGGTATTAATGAGTCTACAGGGAAAAAAAGATCGAGAATCTAAGAATTGTCTGACAATTTTACCTCTCATATGG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AGGAGGCCATTGGAGAACATTCCCTTCAGAGATAGTATTTTCTGCTTGACAATAAAAGCTCTGATTCTATTTCA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GAAATGGTCAGCTTCACTCTACATGCACTATAGGTAGAGTGCTAAATCAGATTTTACTAAGTTCAGAGTTAGTC 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TGACATGAGAGATGTGGAAAAAATGAAGTGCATTCCCAAAACAACACTTCTGCTAGCAGCAGTCTCTTGTTTTA 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 AATCAGTTATCTTAAACTGACTTAACTTGCTTTGAGGTATTCTTGAGATACTTCTTTTTATATAAAACTTTTGT 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 TGTTTTAAATCAATGTGTGTCTAAACCATGGAAGCATTCAAGTAGAACACACACACTGTACAGGTGCACATAGG 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 TATCTTCAAACAGGAACAACTGTAGTCTGATAATCACATTCCCCTATAAATACTGTTTAAAAATTTTACAATGC 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 AAGATCATGTCTATTTGGATGGGAATCAAATATAAAATATCTTTAGTAATCTCAAATAGTCATAGGGCTCTCCC 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 CCAATCCAGTAAGCATTTACTCTCTTTGAATTGCTTTTTAATTCTTTAATTATAGCTGAGTTTTCATAGACACA 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 TATAGAAAATCAACTCACGGTGAGAATTAATATTCCCAAGCACTTGCAAAGTGGTGATAGGAAATTATAGCTCA 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 TGCCTATAATCCCAGCACTTTGGGAGGCCAAAAACCGCATGATTATCTCAATAGATGCAGAAAAGGCCTTCGAC 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 AAAATTCAACACCCCTTCATACTAAAAGTTCTTAAACTAGGTATGGATGGAACGTATCTATCTCAAAATAATAA 3922
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3923 GACCTATTTATGACAGACTCACAGCCAATATCATACTGAATGGGCAAAAGCTAGAAGCATTCCCTTTGAAAACC 3996
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3997 GGTCCAAGAAAAGGATGCCATCTCTTACCACTCCTATTCAACATAGTATTGGAAGTTCTGGCCAGGGCGATCAG 4070
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4071 GCAAGAGAAAAAAATAAAGGGTATCCAAGTAGGAAAAGAGGAAGTCAAATTGTCTCTGTTTGCAGATGACATGA 4144
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4145 TTATCTATTAAGAAAACCCTACCGCCTCAGCCTAAAATCTCCTTAAGCTGATAAGGAACTTCAGCAAAATCTCA 4218
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4219 GGACACAAAATCAATGTGCAAATATCACAAGCATTCCTATACACCAGTAATAGCCAAATCATGAGTGAACAGCT 4292
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4293 ATTTACAATTGCTACAAAGAGAATAAAATACCTAAGAATACAACTTACTTACAAGGGATTTGAAGGACCTCATC 4366
Query 1 -------------------------------------------------------------------------- 0
Sbjct 4367 AACAAACCACTGCTCAAGGAAATAAGAGAGGACACAAACGGGTGGGAAAATATTCTATGCTCATTGATAGGAAG 4440
Query 1 ----------------ATGGCCATACTGCCCAAGGTAATTTATAGATTCAATGCCATCCCCATCAAGCTACCAA 58
|||||||||||||||||.||||||||||||||||||||..|.||||||||||||.||.
Sbjct 4441 AATCAATATCGTCAAAATGGCCATACTGCCCAAAGTAATTTATAGATTCAATGCTCTTCCCATCAAGCTATCAT 4514
Query 59 TGACTTTCTTC-ACAGAATTGG-AAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCTGCATCACCA 130
||||||||||| |||||||||| ||||||||||||||||.|||||.||.||||.|||||||||||||||..|||
Sbjct 4515 TGACTTTCTTCTACAGAATTGGAAAAAAACTACTTTAAACTTCATCTGAAACCTAAAAAGAGCCTGCATAGCCA 4588
Query 131 AGTCAATCCTAAGGCAAAAGAAAAAAGCTGGAGGCATCACACTACCTGACTTCAAACTATACTACACGGCTACA 204
||.||||||||||..|||||||.|||||||||||||||||||.|||||||.|||||||||||||||.|||||||
Sbjct 4589 AGACAATCCTAAGTAAAAAGAACAAAGCTGGAGGCATCACACGACCTGACATCAAACTATACTACAAGGCTACA 4662
Query 205 GTAACCAAAACAGCATGGTACTGGTACCAAAACAGAGATATAGATCAATGGAACAGAACAGAGCCCTCAGAAAT 278
|||||||||||||||||.||||||||||||||||||||||||||.||||||||||||||||||.||||||||||
Sbjct 4663 GTAACCAAAACAGCATGATACTGGTACCAAAACAGAGATATAGACCAATGGAACAGAACAGAGGCCTCAGAAAT 4736
Query 279 AATGCCGCATATCTACAACTATCTGATCTTTGACAAACCTGACAAAAACAAGCAATGG-GGAAAGGATTCCCTA 351
||..||.||.|||||||||.||||..||||||||||.||||||||||||||||||||| ||||| |||.|||||
Sbjct 4737 AACACCACACATCTACAACCATCTAGTCTTTGACAAGCCTGACAAAAACAAGCAATGGAGGAAA-GATGCCCTA 4809
Query 352 TCTAATAAATGGTGCTGGGAAAACTGGCTAGCCATATGTAAAAAGCTGAAACTGGATCCCTTCCTTACACCTTA 425
|.||||||||||||.||||||||.||||||||||||||.|.|||.|||||||||||.|||||||||||||||||
Sbjct 4810 TTTAATAAATGGTGTTGGGAAAATTGGCTAGCCATATGCAGAAAACTGAAACTGGACCCCTTCCTTACACCTTA 4883
Query 426 TACAAAAATTAATTCAAGGTGGATTAAAGACTTAAACATTAGACCTAAAACCATAAAAACCCTAGAAGAAAACC 499
||||||||||||.||||||||||||||||||||||||.|.||||||||||||||||||||.|.|||||||||||
Sbjct 4884 TACAAAAATTAACTCAAGGTGGATTAAAGACTTAAACGTAAGACCTAAAACCATAAAAACTCGAGAAGAAAACC 4957
Query 500 TTGGCATTACCATTCAGGACATAGGAATGGGCAAGCACTTCATGTCTAAAACACCAAAAGCAA-------TGGC 566
|.||||.||||||||||||.|||.|.|||||.||..||||||||.|| |.||.| ||||
Sbjct 4958 TAGGCAATACCATTCAGGATATATGCATGGGTAAAGACTTCATGACT----------AGGCCAGGCGTGGTGGC 5021
Query 567 AACAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCA 640
|.|||..|| ||
Sbjct 5022 ---------------TTACACCTG-----TA------------------------------------------- 5032
Query 641 GAGTGAACAGGCAACCTACAGAATGGGAGAAAATTTTCACAACCTACTCATCTGACAAAGGGCTAATATCCAGA 714
Sbjct 5033 -------------------------------------------------------------------------- 5032
Query 715 ATTTACAATGAACTCAAACAAATT 738
Sbjct 5033 ------------------------ 5032
