Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14082
- Subject:
- NM_001364931.1
- Aligned Length:
- 5536
- Identities:
- 1557
- Gaps:
- 3979
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGCTGCGGCCGCCGCCTCCGCCTCCCAGGATGAGCTGAATCAGCTTGAACGGGTCTTTTTACGACTTGGCCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGCTGAAACAGATGAACAATTACAGAATATTATATCTAAATTCCTTCCTCCTGTTTTGCTCAAACTCTCTAGCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCCAAGAAGGAGTACGTAAAAAGGTAATGGAACTGCTGGTCCATCTGAATAAACGTATAAAAAGCCGCCCCAAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ATACAACTTCCAGTAGAGACACTGTTGGTTCAGTACCAGGACCCTGCTGCAGTTTCCTTTGTCACAAATTTTAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TATAATTTATGTTAAAATGGGCTATCCTCGCCTACCAGTGGAAAAACAATGTGAACTGGCCCCTACGCTTCTTA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTGCCATGGAAGGGAAGCCTCAGCCACAGCAGGATAGCTTAATGCATCTTTTAATACCAACCCTTTTTCACATG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AAATACCCTGTTGAATCATCAAAATCAGCTTCTCCATTTAATCTTGCTGAGAAACCAAAGACTGTGCAGCTGCT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TTTGGACTTCATGCTAGATGTCCTTCTGATGCCTTATGGTTACGTGTTAAATGAATCCCAGAGTCGCCAAAATT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CATCTTCAGCACAGGGTTCTTCTTCAAACAGTGGCGGAGGTTCTGGAATCCCACAGCCTCCTCCGGGAATGAGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTTTATGCAGCCAAACGAGTTATTGGTGATAACCCATGGACACCTGAACAATTGGAACAGTGCAAATTGGGAAT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CGTGAAATTCATAGAAGCTGAACAGGTGCCTGAACTTGAAGCTGTTCTCCACTTGGTGATTGCCTCTAGTGATA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CACGCCACAGTGTGGCAACGGCAGCAGACCTGGAATTGAAAAGCAAACAGAGCTTAATTGACTGGAATAATCCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GCCATCATTAATAAGATGTACAAGGTGTACCTTGGAGATATACCACTGAAGACAAAAGAGGGTGCAGTTCTGAA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GCCAGAGTTGAAAAGGGACCCTGTCAGTACAAGAGTCAAGTTAAAGATTGTCCCCCATCTCCTCCGCTCTAGAC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AAGCTGCTGAAACGTTCCCAGCCAACATTCAGGTGGTGTATGATGGACTTTTTGGTACAAATACAAATTCAAAG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTAAGAACATTATCCCTGCAATTTGTGCATCATATTTGTATAACCTGTCCAGAAATCAAGATTAAGCCATTAGG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TCCAATGCTTTTGAATGGCCTCACCAAGCTAATCAATGAATACAAAGAGGACCCTAAACTACTGTCAATGGCAT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ATTCAGCTGTTGGAAAACTCTCCAGTCGGATGCCACATTTATTCACTAAGGATATAGCGCTTGTGCAGCAGCTT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTTGAAGCCCTTTGCAAGGAAGAGCCTGAGACTCGACTTGCTATTCAAGAAGCTTTATCTATGATGGTTGGAGC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GTATAGTACTTTGGAAGGGGCACAGCGAACTCTCATGGAGGCACTTGTGGCTTCGTACTTAATAAAGCCTGAAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTCAAGTTCGACAAGTGGCTGTGAAATTTGCCAGTACGGTGTTTCCCTCAGATCATATCCCTTCCAGATATTTG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CTGCTACTGGCTGCAGGAGATCCACGTGAAGAAGTTCATGGAGAAGCACAACGCGTATTAAGGTGTCTTCCAGG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TAGAAACAGAAAAGAAAGTACTTCTGAGCAGATGCCTTCCTTCCCAGAAATGGTTTATTACATCCAAGAAAAGG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CTTCTCATCGAATGAAAACTCCAGTCAAGTACATGACCGGGACCACTGTCCTTCCATTTAACCCAGCAGCCTTT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GGAGAGATCGTTCTGTACTTGCGCATGTGCCTTGCGCACAGTGCGGGGGTGGTGCCCACCTCTCAGAGTTTGGC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TGATATGCAGGATCATGCCCCAGCCATTGGGCGCTACATACGGACTTTAATGTCAAGCGGGCAGATGGCACCCT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CATCATCTAACAAGAGTGGGGAGACTAACCCTGTCCAGATCTACATTGGCCTGCTTCAGCAGCTGTTAGCAGGT 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GTTGGAGGTTTGCCGGTTATGTACTGTCTATTGGAAGCTGTGTCAGTGTATCCAGAAAAGCTGGCTACCAAATT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TGTAGACAAAACAGAATGGATAAAGAGTCTGATGAATAACAGTAAAGAAGAAATGCGCGAACTGGCAGCGTTGT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TTTATTCTGTAGTGGTATCAACAGTGTCGGGGAATGAGTTGAAATCAATGATAGAACAGCTTATAAAGACTACA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AAAGACAATCACAGCCCGGAGATACAGCATGGATCCTTGCTTGCATTGGGATTCACGGTGGGAAGGTATTTGGC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TAAAAAGAAAATGAGAATGTCAGAGCAACAAGACCTGGAGAGAAATGCTGACACCCTCCCTGATCAAGAGGAAC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TCATTCAGAGTGCTACAGAAACAATAGGCTCATTTTTGGACAGTACATCACCCCTCCTGGCAATTGCTGCCTGC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 ACAGCCCTGGGTGAAATTGGCAGAAATGGTCCACTTCCAATCCCCAGTGAGGGATCTGGCTTTACCAAATTGCA 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 TCTTGTAGAAAGCTTACTAAGTAGAATACCTTCCAGTAAAGAAACAAATAAGATGAAAGAACGAGCAATCCAAA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CACTGGGATATTTTCCAGTTGGGGATGGAGATTTTCCTCACCAGAAACTCCTCTTGCAAGGTCTGATGGATTCT 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 GTGGAGGCCAAGCAGATAGAACTTCAGTTCACTATTGGCGAAGCCATTACCAGTGCTGCAATAGGAACTAGTTC 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TGTGGCTGCCCGAGATGCCTGGCAAATGACTGAAGAGGAATATACTCCACCTGCTGGAGCCAAAGTGAATGATG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TGGTTCCATGGGTGTTGGATGTGATTTTAAATAAACATATCATCAGCCCCAACCCACACGTGAGGCAAGCAGCC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TGCATCTGGCTCCTTTCCCTTGTCAGGAAGCTAAGTACCCACAAAGAAGTGAAGTCTCATCTTAAAGAAATTCA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 AAGTGCATTTGTTTCAGTTCTATCAGAAAATGATGAACTTAGCCAAGATGTTGCATCAAAGGGCCTTGGGTTGG 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 TTTATGAACTAGGCAATGAACAAGATCAACAGGAATTGGTTTCTACACTTGTGGAAACACTTATGACTGGCAAA 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 AGAGTTAAACATGAAGTTTCTGGAGAGACAGTGGTATTTCAAGGGGGAGCTCTTGGCAAAACACCAGATGGTCA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GGGCCTTTCTACTTACAAGGAACTTTGTTCTCTGGCAAGTGATCTTAGCCAGCCAGATCTGGTGTATAAATTTA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TGAATTTAGCCAACCATCATGCAATGTGGAACTCTAGGAAGGGTGCTGCTTTTGGTTTTAATGTAATTGCTACC 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 AGAGCTGGAGAGCAGCTGGCTCCTTTTCTGCCTCAGCTAGTTCCTCGACTTTATCGTTACCAGTTTGATCCCAA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 CCTTGGCATTCGACAGGCCATGACAAGTATTTGGAATGCGTTGGTCACTGACAAATCCATGGTGGATAAATATT 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 TGAAAGAAATTCTTCAAGATTTGGTTAAGAACCTTACAAGCAATATGTGGCGAGTTCGAGAATCCAGCTGTTTA 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 GCTTTGAATGATTTATTGAGAGGAAGACCCTTAGATGACATCATTGATAAACTTCCAGAAATTTGGGAAACGCT 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TTTTAGAGTACAAGATGATATCAAGGAATCTGTACGAAAAGCGGCAGAACTAGCTCTGAAAACTCTGAGCAAGG 3700
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3701 TCTGTGTGAAAATGTGTGACCCTGCCAAAGGAGCAGCTGGCCAGAGAACCATCGCTGCCCTTCTGCCTTGCCTT 3774
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3775 CTGGACAAAGGAATGATGAGCACCGTGACGGAAGTTCGAGCCCTCAGCATTAACACCCTTGTGAAGATCAGCAA 3848
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3849 AAGTGCAGGAGCCATGTTGAAACCGCATGCACCAAAACTCATTCCAGCTCTGCTAGAGTCCTTAAGTGTATTGG 3922
Query 1 --------------------------------------------------------ATGGATAGTGCTCGGCTT 18
||||||||||||||||||
Sbjct 3923 AGCCCCAAGTTCTCAATTATTTGAGCCTCCGGGCGACAGAGCAAGAAAAGGCTGCGATGGATAGTGCTCGGCTT 3996
Query 19 AGTGCTGCCAAATCTTCTCCAATGATGGAAACAATCAACATGTGCCTGCAATACCTTGATGTGTCAGTGCTGGG 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3997 AGTGCTGCCAAATCTTCTCCAATGATGGAAACAATCAACATGTGCCTGCAATACCTTGATGTGTCAGTGCTGGG 4070
Query 93 CGAGCTAGTTCCTAGGTTGTGTGAACTGATCAGAAGTGGTGTAGGTCTTGGAACTAAGGGTGGCTGTGCCAGTG 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4071 CGAGCTAGTTCCTAGGTTGTGTGAACTGATCAGAAGTGGTGTAGGTCTTGGAACTAAGGGTGGCTGTGCCAGTG 4144
Query 167 TCATTGTGTCATTAACTACTCAGTGTCCTCAGGACCTAACACCTTACTCAGGTAAACTTATGAGTGCTTTGCTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4145 TCATTGTGTCATTAACTACTCAGTGTCCTCAGGACCTAACACCTTACTCAGGTAAACTTATGAGTGCTTTGCTG 4218
Query 241 AGTGGCCTGACAGATCGGAACAGTGTGATTCAGAAATCTTGTGCATTTGCTATGGGCCATTTAGTTCGGACCTC 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4219 AGTGGCCTGACAGATCGGAACAGTGTGATTCAGAAATCTTGTGCATTTGCTATGGGCCATTTAGTTCGGACCTC 4292
Query 315 ACGGGATAGCAGCACTGAAAAACTCCTGCAGAAGCTCAATGGGTGGTATATGGAGAAAGAAGAACCTATCTACA 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4293 ACGGGATAGCAGCACTGAAAAACTCCTGCAGAAGCTCAATGGGTGGTATATGGAGAAAGAAGAACCTATCTACA 4366
Query 389 AGACCTCTTGTGCTTTGACTATTCATGCTATTGGACGATACAGCCCTGATGTATTAAAGAATCATGCAAAAGAA 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4367 AGACCTCTTGTGCTTTGACTATTCATGCTATTGGACGATACAGCCCTGATGTATTAAAGAATCATGCAAAAGAA 4440
Query 463 GTCCTGCCTCTGGCATTTTTAGGCATGCATGAAATTGCTGATGAGGAGAAATCCGAAAAAGAAGAATGTAATTT 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4441 GTCCTGCCTCTGGCATTTTTAGGCATGCATGAAATTGCTGATGAGGAGAAATCCGAAAAAGAAGAATGTAATTT 4514
Query 537 ATGGACCGAAGTGTGGCAGGAAAACGTACCTGGATCCTTTGGTGGCATTCGATTATACCTGCAGGAGTTAATTA 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4515 ATGGACCGAAGTGTGGCAGGAAAACGTACCTGGATCCTTTGGTGGCATTCGATTATACCTGCAGGAGTTAATTA 4588
Query 611 CTATTACCCAGAAGGCTTTGCAGTCTCAGTCCTGGAAAATGAAAGCCCAGGGTGCAATTGCCATGGCATCAATT 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4589 CTATTACCCAGAAGGCTTTGCAGTCTCAGTCCTGGAAAATGAAAGCCCAGGGTGCAATTGCCATGGCATCAATT 4662
Query 685 GCAAAACAGACTAGCTCTCTAGTACCTCCATATCTCGGAATGATACTGACCGCATTGCTGCAAGGCCTGGCTGG 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4663 GCAAAACAGACTAGCTCTCTAGTACCTCCATATCTCGGAATGATACTGACCGCATTGCTGCAAGGCCTGGCTGG 4736
Query 759 AAGAACGTGGGCAGGAAAGGAGGAGCTATTGAAAGCCATTGCCTGTGTGGTGACAGCTTGCAGTGCAGAGCTGG 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4737 AAGAACGTGGGCAGGAAAGGAGGAGCTATTGAAAGCCATTGCCTGTGTGGTGACAGCTTGCAGTGCAGAGCTGG 4810
Query 833 AAAAGTCTGTGCCCAATCAACCCAGCACAAATGAAATTCTTCAAGCTGTTCTGAAGGAATGTAGCAAAGAGAAT 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4811 AAAAGTCTGTGCCCAATCAACCCAGCACAAATGAAATTCTTCAAGCTGTTCTGAAGGAATGTAGCAAAGAGAAT 4884
Query 907 GTCAAATACAAGATTGTAGCAATCAGCTGTGCAGCTGATATCTTGAAGGCCACCAAAGAGGACAGATTCCAGGA 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4885 GTCAAATACAAGATTGTAGCAATCAGCTGTGCAGCTGATATCTTGAAGGCCACCAAAGAGGACAGATTCCAGGA 4958
Query 981 GTTCTCTAACATTGTCATACCTCTCATCAAGAAGAACTCACTTGAAAGCAGTGGGGTCCGGACAACCAAAAATG 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4959 GTTCTCTAACATTGTCATACCTCTCATCAAGAAGAACTCACTTGAAAGCAGTGGGGTCCGGACAACCAAAAATG 5032
Query 1055 AAGAGGAGAATGAAAAGGAAAAGGAGCTCCAGCTGGAATATCTGCTGGGTGCCTTTGAAAGCCTGGGCAAAGCC 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5033 AAGAGGAGAATGAAAAGGAAAAGGAGCTCCAGCTGGAATATCTGCTGGGTGCCTTTGAAAGCCTGGGCAAAGCC 5106
Query 1129 TGGCCGCGAAACGCGGAGACCCAACGTTGTTATCGTCAGGAGCTGTGCAAACTGATGTGTGAACGGCTAAAACT 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5107 TGGCCGCGAAACGCGGAGACCCAACGTTGTTATCGTCAGGAGCTGTGCAAACTGATGTGTGAACGGCTAAAACT 5180
Query 1203 CAGCACGTGGAAAGTGCAGCTAGGAGTCCTGCAATCAATGAATGCCTTTTTTCAGGGGTTAATGCTTTTGGAAG 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5181 CAGCACGTGGAAAGTGCAGCTAGGAGTCCTGCAATCAATGAATGCCTTTTTTCAGGGGTTAATGCTTTTGGAAG 5254
Query 1277 AAGAACATGCCGATCCTGAGGCTTTGGCTGAAATTCTGCTTGAAACTTGTAAATCAATCACATATTCTTTAGAA 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5255 AAGAACATGCCGATCCTGAGGCTTTGGCTGAAATTCTGCTTGAAACTTGTAAATCAATCACATATTCTTTAGAA 5328
Query 1351 AATAAGACCTACTCATCTGTGAGAACAGAAGCTTTATCTGTGATAGAATTGCTGCTTAAAAAACTTGAAGAATC 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5329 AATAAGACCTACTCATCTGTGAGAACAGAAGCTTTATCTGTGATAGAATTGCTGCTTAAAAAACTTGAAGAATC 5402
Query 1425 TAAACAGTGGGAATGTTTGACATCTGAATGCAGAGTGCTCCTAATTGAGTCTTTAGCTACTATGGAGCCAGACA 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5403 TAAACAGTGGGAATGTTTGACATCTGAATGCAGAGTGCTCCTAATTGAGTCTTTAGCTACTATGGAGCCAGACA 5476
Query 1499 GCAGACCTGAACTGCAGGAGAAAGCAGCGTTACTGAAGANAAACACTTGAAAATCTGGAA 1558
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 5477 GCAGACCTGAACTGCAGGAGAAAGCAGCGTTACTGAAGA-AAACACTTGAAAATCTGGAA 5535
