Construct: ORF ccsbBroadEn_14082

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007272.1_s300c1, BRDN0000386473
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
ECPAS (23392)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23392 ECPAS Ecm29 proteasome adaptor an... XM_017014557.1 36.4% 36% 1_2709del;4246_4247insN
2 human 23392 ECPAS Ecm29 proteasome adaptor an... NM_001363756.1 28.2% 27.8% 1_3960del;5497_5498insN
3 human 23392 ECPAS Ecm29 proteasome adaptor an... NM_001364929.1 28.2% 27.8% 1_3960del;5497_5498insN
4 human 23392 ECPAS Ecm29 proteasome adaptor an... NM_001364930.1 28.2% 27.8% 1_3960del;5497_5498insN
5 human 23392 ECPAS Ecm29 proteasome adaptor an... XM_005251853.3 28.2% 27.8% 1_3960del;5497_5498insN
6 human 23392 ECPAS Ecm29 proteasome adaptor an... NM_001364931.1 28.1% 27.7% 1_3978del;5515_5516insN
7 human 23392 ECPAS Ecm29 proteasome adaptor an... XM_011518422.3 25.7% 25.6% (many diffs)
8 mouse 230249 AI314180 expressed sequence AI314180 XM_011250007.2 27.6% 28.8% (many diffs)
9 mouse 230249 AI314180 expressed sequence AI314180 XM_006537850.3 25.8% 27% (many diffs)
10 mouse 230249 AI314180 expressed sequence AI314180 NM_172381.2 25.1% 26.2% (many diffs)
11 mouse 230249 AI314180 expressed sequence AI314180 XM_006537848.3 25.1% 26.2% (many diffs)
12 mouse 230249 AI314180 expressed sequence AI314180 XM_006537849.3 25.1% 26.2% (many diffs)
13 mouse 230249 AI314180 expressed sequence AI314180 XM_006537847.3 25% 26.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1611
ORF length:
1545
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA TAGTGCTCGG CTTAGTGCTG CCAAATCTTC TCCAATGATG GAAACAATCA
121ACATGTGCCT GCAATACCTT GATGTGTCAG TGCTGGGCGA GCTAGTTCCT AGGTTGTGTG
181AACTGATCAG AAGTGGTGTA GGTCTTGGAA CTAAGGGTGG CTGTGCCAGT GTCATTGTGT
241CATTAACTAC TCAGTGTCCT CAGGACCTAA CACCTTACTC AGGTAAACTT ATGAGTGCTT
301TGCTGAGTGG CCTGACAGAT CGGAACAGTG TGATTCAGAA ATCTTGTGCA TTTGCTATGG
361GCCATTTAGT TCGGACCTCA CGGGATAGCA GCACTGAAAA ACTCCTGCAG AAGCTCAATG
421GGTGGTATAT GGAGAAAGAA GAACCTATCT ACAAGACCTC TTGTGCTTTG ACTATTCATG
481CTATTGGACG ATACAGCCCT GATGTATTAA AGAATCATGC AAAAGAAGTC CTGCCTCTGG
541CATTTTTAGG CATGCATGAA ATTGCTGATG AGGAGAAATC CGAAAAAGAA GAATGTAATT
601TATGGACCGA AGTGTGGCAG GAAAACGTAC CTGGATCCTT TGGTGGCATT CGATTATACC
661TGCAGGAGTT AATTACTATT ACCCAGAAGG CTTTGCAGTC TCAGTCCTGG AAAATGAAAG
721CCCAGGGTGC AATTGCCATG GCATCAATTG CAAAACAGAC TAGCTCTCTA GTACCTCCAT
781ATCTCGGAAT GATACTGACC GCATTGCTGC AAGGCCTGGC TGGAAGAACG TGGGCAGGAA
841AGGAGGAGCT ATTGAAAGCC ATTGCCTGTG TGGTGACAGC TTGCAGTGCA GAGCTGGAAA
901AGTCTGTGCC CAATCAACCC AGCACAAATG AAATTCTTCA AGCTGTTCTG AAGGAATGTA
961GCAAAGAGAA TGTCAAATAC AAGATTGTAG CAATCAGCTG TGCAGCTGAT ATCTTGAAGG
1021CCACCAAAGA GGACAGATTC CAGGAGTTCT CTAACATTGT CATACCTCTC ATCAAGAAGA
1081ACTCACTTGA AAGCAGTGGG GTCCGGACAA CCAAAAATGA AGAGGAGAAT GAAAAGGAAA
1141AGGAGCTCCA GCTGGAATAT CTGCTGGGTG CCTTTGAAAG CCTGGGCAAA GCCTGGCCGC
1201GAAACGCGGA GACCCAACGT TGTTATCGTC AGGAGCTGTG CAAACTGATG TGTGAACGGC
1261TAAAACTCAG CACGTGGAAA GTGCAGCTAG GAGTCCTGCA ATCAATGAAT GCCTTTTTTC
1321AGGGGTTAAT GCTTTTGGAA GAAGAACATG CCGATCCTGA GGCTTTGGCT GAAATTCTGC
1381TTGAAACTTG TAAATCAATC ACATATTCTT TAGAAAATAA GACCTACTCA TCTGTGAGAA
1441CAGAAGCTTT ATCTGTGATA GAATTGCTGC TTAAAAAACT TGAAGAATCT AAACAGTGGG
1501AATGTTTGAC ATCTGAATGC AGAGTGCTCC TAATTGAGTC TTTAGCTACT ATGGAGCCAG
1561ACAGCAGACC TGAACTGCAG GAGAAAGCAG CGTTACTGAA GANAAACACT TGAAAATCTG
1621GAATACCCAA CTTTCTTGTA CANAGTtggc attataagaa agcattgctt atcaatttgt
1681tgcaacgaac

Download FASTA (ORF) (Full)