Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14358
- Subject:
- XM_011244652.2
- Aligned Length:
- 2458
- Identities:
- 908
- Gaps:
- 1436
Alignment
Query 1 ------ATGGCGTATTTCATCGAGAATTTTTGGGGGGAAAAAAATAGTGGCTTTGATGTCCTCTACCATAATAT 68
||||||.|||||.|.||||||||.||||||||||||||||.||||||||||||.||.|||||||||||
Sbjct 1 ATGGTCATGGCGCATTTCGTGGAGAATTTCTGGGGGGAAAAAAATAATGGCTTTGATGTACTGTACCATAATAT 74
Query 69 GAAACATGGACAGATATCGACAAAAGAACTAGCAGATTTTGTAAGGGAACGAGCTACCATAGAGGAGGCATACT 142
|||.||||||||||||||.||.|||||||||||||||||||||||.|||
Sbjct 75 GAAGCATGGACAGATATCAACTAAAGAACTAGCAGATTTTGTAAGAGAA------------------------- 123
Query 143 CCAGGTCAATGACAAAACTAGCAAAATCTGCAAGCAATTATTCACAACTTGGAACATTTGCACCAGTATGGGAT 216
.||||||||||||||.|.||||||
Sbjct 124 --------------------------------------------------AGAACATTTGCACCAATGTGGGAT 147
Query 217 GTATTCAAAACATCTACAGAGAAATTAGCAAATTGTCACTTGGATCTTGTTAGAAAATTACAAGAATTAATAAA 290
||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||.|||||||||||
Sbjct 148 GTATTCAAAACATCTACAGAGAAATTAGCAAATTGTCATTTGGATCTTGTTAGAAAATTACAGGAATTAATAAA 221
Query 291 GGAAGTTCAGAAGTATGGAGAAGAACAAGTAAAGTCTCATAAAAAGACTAAAGAAGAAGTTGCAGGAACTCTGG 364
|||||||||||||||||||||.||.|||||.|||||||||||.|||||||||||||||||.|||||.|||||||
Sbjct 222 GGAAGTTCAGAAGTATGGAGAGGAGCAAGTCAAGTCTCATAAGAAGACTAAAGAAGAAGTCGCAGGGACTCTGG 295
Query 365 AAGCTGTCCAAACCATTCAGAGCATAACTCAGGCCCTCCAGAAATCCAAGGAAAATTACAATGCCAAGTGTGTA 438
||||.||||||.|||||||||..|||||||||||.||||||||.||.|||||||||||||.||||||.||||||
Sbjct 296 AAGCAGTCCAAGCCATTCAGAATATAACTCAGGCACTCCAGAAGTCGAAGGAAAATTACACTGCCAAATGTGTA 369
Query 439 GAACAGGAGCGTTTGAAAAAGGAAGGAGCTACACAAAGAGAAATAGAAAAGGCAGCTGTTAAATCTAAGAAAGC 512
||||||||.|||.|||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 370 GAACAGGAACGTCTGAAAAAGGAAGGAGCTACACAAAGAGAAATAGAAAAGGCAGCTGTTAAGTCTAAGAAAGC 443
Query 513 TACAGATACTTATAAACTCTATGTGGAAAAATATGCATTAGCAAAAGCTGATTTCGAACAGAAAATGACAGAAA 586
||||||||||||||||||.|||||||||||.|||||||||.|||||||.|||||.||.|||||.||||||||||
Sbjct 444 TACAGATACTTATAAACTTTATGTGGAAAAGTATGCATTAACAAAAGCAGATTTTGAGCAGAAGATGACAGAAA 517
Query 587 CAGCTCAGAAATTTCAAGATATTGAAGAAACTCATCTCATTCACATAAAGGAAATTATAGGATCCTTGTCAAAT 660
||||.|||||||||||||||||||||||||||||.|||||||||||||||||||||||.|||||||||||||||
Sbjct 518 CAGCCCAGAAATTTCAAGATATTGAAGAAACTCACCTCATTCACATAAAGGAAATTATCGGATCCTTGTCAAAT 591
Query 661 GCTATAAAGGAAATTCATTTGCAGATAGGCCAGGTCCATGAAGAATTTATAAATAACATGGCTAATACTACAGT 734
|||.|.|||||.||.||.||.|||||.||||||||.||||||||.|||||||||||||||||||||||||||.|
Sbjct 592 GCTGTCAAGGAGATCCACTTACAGATCGGCCAGGTTCATGAAGAGTTTATAAATAACATGGCTAATACTACAAT 665
Query 735 TGAAAGTTTGATACAAAAATTTGCTGAGTCAAAAGGCACTGGGAAGGAAAGACCTGGCCTCATTGAATTTGAAG 808
||||||||||||.||.||||||||.||||||||||||||.|||||||||||||||||.||.|||||||||||||
Sbjct 666 TGAAAGTTTGATTCAGAAATTTGCCGAGTCAAAAGGCACAGGGAAGGAAAGACCTGGTCTTATTGAATTTGAAG 739
Query 809 AATGTGACACTGCTAGTGCAGTTGAAGGTATAAAACCAAGGAAAAGAAAGACCTTTGCTTTGCCAGGAATCATT 882
|.||||||.|||||||||||||||||||.|||||||||||||||||||||||.|||||||||||.|||||.|||
Sbjct 740 AGTGTGACCCTGCTAGTGCAGTTGAAGGCATAAAACCAAGGAAAAGAAAGACTTTTGCTTTGCCTGGAATAATT 813
Query 883 AAAAAGGAAAAAGATGCAGAATCTGTATGGAGTTTCACTGTTGTTGCCCAGGTTGG------AATGCAATGGCG 950
|||||||||||.||.|||||||||| ||||.|.|| |||.|| |||.||.| |.|.||
Sbjct 814 AAAAAGGAAAAGGACGCAGAATCTG--TGGAATGTC-CTGATG-----CAGATTCGCTTAATATTCCA------ 873
Query 951 CGATCTTG--------GCTTACTGCATTCTCCACC------------------TCCCAGGTTCAAGCGA----- 993
|||.|.| |.||.|.|.|| |..||| |.||| |||.||
Sbjct 874 -GATGTAGATGAAGAAGGTTTCAGTAT--TAAACCAGAAGCAAATCAGAATGATACCA-----AAGAGAACCAT 939
Query 994 TTCTCCTCCTAC-----CTCAGCCTC-------------CCAA----GTAGCTGGA-----ATTA---CGGCGC 1037
||||.|||.|.| |||.|.||| |||| ||| |.||| ||.| |.||||
Sbjct 940 TTCTACTCATCCAGTGACTCTGACTCTGAAGATGAAGAACCAAAGAGGTA-CCGGATAGAGATCAAGCCCGCGC 1012
Query 1038 --CCA--------CCACCACATC--TGGCTAATTTTTTGTAT----TTTTAGTAGAGACAGGG----------T 1085
||| .||.|||| | |||| ||.||||.|| |...||||...|.|||| |
Sbjct 1013 ATCCAAATAACTTGCATCACA-CAATGGC---TTCTTTGGATGAACTGAAAGTATCCATAGGGAATATAACATT 1082
Query 1086 TTCACCA----TAT--------TGGCCAG-GCTG----GTCGCGAACTCCTGACCTCAGG-------------- 1128
.||.||| ||| .|.|||| ||.| .||| |||.|| |.||.|.|
Sbjct 1083 GTCCCCAGCAGTATCTAGACACAGTCCAGTGCAGATGAATCG-GAATTC---ATCTAATGAAGAATTAACAAAA 1152
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1153 TCAAAGCCGTCTTCTCTACCCACTGAGAAAGGGACCAATGATTTACTTGCTTGGGATCCCCTGTTCGGATCGTC 1226
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1227 GCTTGAGTCATCTTCAGCTCCACTAACTTCGTCATCATCGGCCAGACCCACGACACCTCTCTCTTTAGGCACCC 1300
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1301 TTGTTCCACCTCCAAGGCCTGCTTCCAGACCAAAGCTTGCTTCAGGAAAACTGAGTGGGATCAATGAAATACCC 1374
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1375 AGGCCATTCAGCCCACCTGTAACTTCCAACACCAGCCCACCTCCTACTGCTCCCTTAGCCCGAGCCGAGAGCAG 1448
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1449 CTCCTCTATCTCCTCGTCTGCCTCGTTGAGTGCTGCCAACACTCCAACAGTAGGTGTATCACGGGGTCCCAGCC 1522
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1523 CGGTCAGCCTTGGAAACCAGGACACTTTACCTGTGGCAATCGCCCTTACAGAATCTGTCAACGCCTACTTTAAA 1596
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1597 GGAGCAGATCCTACCAAGTGTATTGTGAAGATCACGGGAGACGTGACAATATCATTTCCCAGTGGGATTATTAA 1670
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1671 AGTCTTCACCAGCAACCCCTCCCCAGCTGTGCTGTGCTTTAGGGTGAAGAACATCAGCAGGCTGGAGCAGATCC 1744
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1745 TTCCAAACTCCCAGCTTGTGTTCAGTGATCCATCACAGTGTGATTCCAACACAAAAGATTTTTGGATGAACATG 1818
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1819 CAAGCTGTTACTATCTACCTCAAGAAGCTATCAGAACAAAATCCAGCTGCTTCTTATTATAATGTAGATGTATT 1892
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1893 AAAATACCAGGTATCATCAAATGGCATTCAGTCCACTCCTCTAAATCTTGCAACCTACTGGAAATGTAGTGCCA 1966
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1967 GCACCACAGATCTGAGAGTGGATTATAAGTACAACCCAGAAGCTATGGTCGCTCCGAGTGTGCTTTCCAACATA 2040
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2041 CAGGTGGTGGTTCCCGTGGATGGAGGTGTCACAAATATGCAGTCCCTTCCTCCTGCAATATGGAATGCAGAGCA 2114
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2115 AATGAAAGCTTTTTGGAAATTATCTGGGATTTCGGAGAAATCAGACAGTGGAGGTTCTGGATCCCTCAGAGCAA 2188
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2189 AATTTGATCTTTCAGAAGGACCCAGCAAACCTACAACACTGGCAGTGCAATTCCTCAGTGAGGGCAATACGCTC 2262
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2263 TCAGGAGTGGATATTGAGCTTGTGGGTACTGGCTATAGACTTTCCTTAGTAAAGAAGCGCTTTGCCACTGGACG 2336
Query 1129 ---------------- 1128
Sbjct 2337 ATACTTGGCAGATTGT 2352
