Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14437
- Subject:
- XR_001747053.1
- Aligned Length:
- 6927
- Identities:
- 486
- Gaps:
- 6438
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGGGACTTAAGTCCGGCACCGCCGCCCTCTCCCCCGCCCCGCCGCGCTAGAGCCTGGGGTCTCGGCAACTTCCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCGGCGGGAGCTGCAGAGCGCAAGGCGCGCCCACTGCGCGTGCGCTTCGGCCCGGCTCCTCCTGCGCCCCCGGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCCTGCGACTGGGACTTGGTACGGCCGGGCGGTTGGCGTCCTCTGCGGCTCCTGCCAGGGGCGGGCTTTTCAAA 222
Query 1 -----------------------------------------------ATGGAGGGGCCGAGCCTGAGGGGTCCT 27
|||||||||||||||||||||||||||
Sbjct 223 TCTTCCCTTTGAAGGAGTGGCGACGGCCCGGACAGTTCGCGTTGGAGATGGAGGGGCCGAGCCTGAGGGGTCCT 296
Query 28 GCGCTCCGCCTGGCGGGGCTTCCCACCCAGCAGGACTGCAACATTCAAGAAAAAATAGACTTAGAAATTCGAAT 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GCGCTCCGCCTGGCGGGGCTTCCCACCCAGCAGGACTGCAACATTCAAGAAAAAATAGACTTAGAAATTCGAAT 370
Query 102 GCGAGAAGGAATATGGAAACTCCTTTCTCTGAGCACTCAGAAAGATCAAGTTTTACATGCAGTTAAGAATCTCA 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GCGAGAAGGAATATGGAAACTCCTTTCTCTGAGCACTCAGAAAGATCAAGTTTTACATGCAGTTAAGAATCTCA 444
Query 176 TGGTGTGCAATGCTCGACTAATGGCCTATACATCGGAGCTACAGAAATTAGAAGAACAGATTGCAAATCAGACT 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TGGTGTGCAATGCTCGACTAATGGCCTATACATCGGAGCTACAGAAATTAGAAGAACAGATTGCAAATCAGACT 518
Query 250 GGAAGATGTGATGTGAAATTTGAAAGTAAAGAACGAACAGCATGTAAAGGAAAGATTGCCATATCAGATATTCG 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GGAAGATGTGATGTGAAATTTGAAAGTAAAGAACGAACAGCATGTAAAGGAAAGATTGCCATATCAGATATTCG 592
Query 324 AATACCACTAATGTGGAAAGACTCTGATCACTTCAGCAATAAAGAACGATCACGACGCTATGCCATTTTTTGTT 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AATACCACTAATGTGGAAAGACTCTGATCACTTCAGCAATAAAGAACGATCACGACGCTATGCCATTTTTTGTT 666
Query 398 TATTCAAAATGGGAGCTAATGTGTTTGATACTGATGTGGTGAATGTGGATAAAACAATCACAGATATATGNTTT 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 667 TATTCAAAATGGGAGCTAATGTGTTTGATACTGATGTGGTGAATGTGGATAAAACAATCACAGATATATGTTTT 740
Query 472 GNAAATGTAACCATATTG-------------------------------------------------------- 489
|.|||||||||||||||.
Sbjct 741 GAAAATGTAACCATATTTAATGAAGCAGGGCCAGACTTTCAGATAAAGGTGGAAGTGTATAGTTGCTGTACAGA 814
Query 490 -------------------------------------------------------------------------- 489
Sbjct 815 AGAATCTTCTATAACCAACACACCAAAAAAGCTAGCTAAGAAACTCAAGACATCTATAAGTAAAGCTACAGGAA 888
Query 490 -------------------------------------------------------------------------- 489
Sbjct 889 AGAAAATAAGTTCAGTGCTTCAAGAAGAGGATGATGAAATGTGCTTGCTCCTCAGCTCTGCTGTTTTTGGTGTA 962
Query 490 -------------------------------------------------------------------------- 489
Sbjct 963 AAGTATAATTTGCTAGCTCACACTACCCTAACCTTGGAAAGTGCTGAGGATAGTTTCAAGACCCATAATCTGTC 1036
Query 490 -------------------------------------------------------------------------- 489
Sbjct 1037 TATTAATGGAAATGAGGAGTCTTCATTTTGGCTTCCCCTGTATGGCAACATGTGCTGCCGACTAGTTGCCCAGC 1110
Query 490 -------------------------------------------------------------------------- 489
Sbjct 1111 CAGCTTGTATGGCTGAGGATGCATTTGCAGGATTTCTTAATCAGCAGCAAATGGTAGAAGGTCTGATTAGTTGG 1184
Query 490 -------------------------------------------------------------------------- 489
Sbjct 1185 AGAAGGTTGTATTGTGTTTTGCGAGGAGGTAAACTCTATTGTTTTTACAGTCCAGAGGAAATTGAAGCTAAAGT 1258
Query 490 -------------------------------------------------------------------------- 489
Sbjct 1259 GGAACCAGCTTTGGTAGTACCCATTAACAAGAATATTCAGTCATAAAATAAAATGTAATCTAAACAAATGATAT 1332
Query 490 -------------------------------------------------------------------------- 489
Sbjct 1333 TTTTGAAGTCATTAGTTTTATTTGAAGACAGTCTCGAAGGAATTCAACTCGCCATATCTCAGTCCTTTAAGGAA 1406
Query 490 -------------------------------------------------------------------------- 489
Sbjct 1407 ACCAGAATCCGGGCAATGGATAAGGATGCCAAGAAAAGAATCCATAATTTCTCTGTCATCAATCCTGTTCCTGG 1480
Query 490 -------------------------------------------------------------------------- 489
Sbjct 1481 ACAAGCTATAACTCAGATTTTTGCAGTTGACAATAGAGAAGATCTTCAGAAGTGGATGGAAGCCTTCTGGCAGC 1554
Query 490 -------------------------------------------------------------------------- 489
Sbjct 1555 ATTTCTTTGATCTTAGCCAATGGAAGCACTGTTGTGAAGAACTTATGAAAATTGAGATTATGTCACCACGGAAA 1628
Query 490 -------------------------------------------------------------------------- 489
Sbjct 1629 CCACCTTTGTTCTTGACAAAAGAGGCAACCTCAGTCTACCATGATATGAGCATTGATTCACCTATGAAACTTGA 1702
Query 490 -------------------------------------------------------------------------- 489
Sbjct 1703 AAGTTTAACGGATATAATACAAAAAAAAATTGAAGAGACAAATGGGCAGTTCCTTATTGGTCAGCATGAAGAAT 1776
Query 490 -------------------------------------------------------------------------- 489
Sbjct 1777 CCTTACCACCTCCTTGGGCCACACTCTTTGATGGTAACCATCAAATGGTCATCCAGAAAAAGGTACTGTATCCT 1850
Query 490 -------------------------------------------------------------------------- 489
Sbjct 1851 GCAAGTGAGCCATTACATGATGAAAAAGGGAAAAAGAGACAAGCTCCCCTTCCTCCTTCTGATAAACTTCCATT 1924
Query 490 -------------------------------------------------------------------------- 489
Sbjct 1925 CAGCTTAAAATCACAGAGTAACACAGATCAATTGGTTAAGGACAACTGGGGAAAAACAAGTGTATCTCAGACAT 1998
Query 490 -------------------------------------------------------------------------- 489
Sbjct 1999 CGTCTTTGGATACCAAACTATCAACTCTAATGCATCACTTACAGAAACCAATGGCTGCTCCTCGAAAACTTCTG 2072
Query 490 -------------------------------------------------------------------------- 489
Sbjct 2073 CCTGCCAGGAGAAATAGATTAAGTGATGGTGAGCACACAGACACTAAAACCAATTTTGAAGCCAAGCCAGTGCC 2146
Query 490 -------------------------------------------------------------------------- 489
Sbjct 2147 AGCTCCAAGGCAGAAATCCATCAAAGACATTCTGGACCCTAGATCATGGCTGCAGGCACAAGTATAGAAAACTC 2220
Query 490 -------------------------------------------------------------------------- 489
Sbjct 2221 TTAATGATAAAACATTTAACAAAATCTATAACTGTGAAGCTTAATTCAGAGGCATTATAGAATAATGTGTAATT 2294
Query 490 -------------------------------------------------------------------------- 489
Sbjct 2295 ATATAGGTAAATATAGTGATTTATACCAATAATTAATAAGCTATTAGGTATAGAAAAACATTTTATAATGAAGA 2368
Query 490 -------------------------------------------------------------------------- 489
Sbjct 2369 AGTGGATTTCTCTTTTACTCCTGATTTGCAGAATGTAAGTGATTTCTCCAGCAGTGTGCAAGAGGCAGTTTCTA 2442
Query 490 -------------------------------------------------------------------------- 489
Sbjct 2443 GACAATATCCTAATTGTTGGAAGGGTTAATTTATTCCTGAATTAGTACCAGGCAGTGAATAAGCCCTAGGCAGA 2516
Query 490 -------------------------------------------------------------------------- 489
Sbjct 2517 ATAAAGCATTAAAATTTCTTTTGGGGAGAGACTGTCTAGTAATTTAAAATGTGTTAAATATGAACCATATTCTC 2590
Query 490 -------------------------------------------------------------------------- 489
Sbjct 2591 ATTGTGAGAATTTTAATACTAATGGAATGTTTCAAAGGTTTTATTCAAACCACAAATTATAGAATCCACCCAAG 2664
Query 490 -------------------------------------------------------------------------- 489
Sbjct 2665 AAAATTTTCTTAGCATTCTGGAATTCTCATCTAATGGTTCACTGGCTCTCATCTATTGTTTAACTCACTAGTTT 2738
Query 490 -------------------------------------------------------------------------- 489
Sbjct 2739 ATAGGCCTGACCTTTTAAATTCCTGGGATAAATTTTAGAATATTAAATTCTTCATCTTTAAAGGGAATTTGTAA 2812
Query 490 -------------------------------------------------------------------------- 489
Sbjct 2813 TGTGCTATTCAAACTTGTTTCCTTGATGAGCCCTGAAATACTGTTGACATTAACTTTCATAAATGAAGCATAAC 2886
Query 490 -------------------------------------------------------------------------- 489
Sbjct 2887 ACTTACTAGTTTAGAGAAATGGTAGATGAAATGCTCTTTACATTCAATTTTCTGTGTGTGGTGCTAATTTCCAT 2960
Query 490 -------------------------------------------------------------------------- 489
Sbjct 2961 TGTGACTTTGGAATTTAGGGAAGTGAGTAGCTGATCAACACCTTAAAATTCATTTAATACTTATTTAAAAAGAA 3034
Query 490 -------------------------------------------------------------------------- 489
Sbjct 3035 GATGAGAGATTCAAAAATATCAGAAAAGTTGGCCATGGTAAATAATTTTCAGAATTCTTTTTTAAAATTTTAAT 3108
Query 490 -------------------------------------------------------------------------- 489
Sbjct 3109 TAGATTTCCTTTTCCTAGTAAGAGTTGATGTCTGCTAGTGGTATTTTTCATTAAATGTCATATTCTTACAACAG 3182
Query 490 -------------------------------------------------------------------------- 489
Sbjct 3183 TGACATTGGAATCATTTCCATAGGAGGTAATTTCCATAGCAACTAATCATAGTGACCCAAACAGGATTATAAAG 3256
Query 490 -------------------------------------------------------------------------- 489
Sbjct 3257 TCAAGTGAGGAATAAATAGCAGAAAAATACCTTAAAGGAACAAAAAATCCATTTTTTATAATAATGCTTTTTGT 3330
Query 490 -------------------------------------------------------------------------- 489
Sbjct 3331 AAACAAGAGCAGAACAGTTTTAAAAATCTAATTAGAATTTCCAAATAAAACAGTTTCCATAAGGTGTCAGCAAC 3404
Query 490 -------------------------------------------------------------------------- 489
Sbjct 3405 AGCACTAAAAATCTCAAATCACACTGAACCCTAAATGTCATTGCAAGAAATAAAAATTTAAGAATTAAATTGCT 3478
Query 490 -------------------------------------------------------------------------- 489
Sbjct 3479 GCCCTGTGTATAATCTCTTGAGATCTTTTTAAAGCTAGCAAGAACTCTATTTGGATCAGAACTACATTATTACA 3552
Query 490 -------------------------------------------------------------------------- 489
Sbjct 3553 AAACAAAATGAACACTTGACCAAAAAACCACATTAATTTAAATGGAGCCTTTCATTATTTTCAGATAGCGGGGT 3626
Query 490 -------------------------------------------------------------------------- 489
Sbjct 3627 CTTTTCCATTTATAGAGAATGATGTAACTGCCAGGACACTTTTGTGTTTGCCCAGGACTCCTAGTAAGAATTGA 3700
Query 490 -------------------------------------------------------------------------- 489
Sbjct 3701 ATCTTGAGGGAGTAATGATAACAAAAGGTTTCTTGTGACTGGTAACATCAGGACAGACAGAGTTTTTGGTGAGA 3774
Query 490 -------------------------------------------------------------------------- 489
Sbjct 3775 AGAAAGTACTATATGCCTGCTTGATAGCATGTAGAGATCATCACATGTATGGAAACCTTAAAAAGTAAACTTAT 3848
Query 490 -------------------------------------------------------------------------- 489
Sbjct 3849 TTTTTCTAACTAGAAGGCTCTCATAAGTTTCTGTTATGATTGCCATTTCAATAAATGACATTAAAAATCTAAAG 3922
Query 490 -------------------------------------------------------------------------- 489
Sbjct 3923 GATATTATTGTTTGAATTTTTGGGTTATTTTTTAAAACTTCATTGCTGTTTTTGACAGCATTTGTGACTGTCAT 3996
Query 490 -------------------------------------------------------------------------- 489
Sbjct 3997 TGCCACTAAATTATTGAGCTAGAAGATGCTGCAGGGAAAATTGTTTTGAAGCTGGCATCTAAGCATTCTTTTTT 4070
Query 490 -------------------------------------------------------------------------- 489
Sbjct 4071 TTTTCCTAGTTGATGCCTTCCTTTATTACAAATCAGTATTAAAACTTCCAGATTATATTCTTGTCATTTTTCCT 4144
Query 490 -------------------------------------------------------------------------- 489
Sbjct 4145 CATGCAGATAACAGCAGGAAGGACTTAAGGTGTATAAGAAAAAGAAAGTATTCATACAGAAATTACCTAGCAGT 4218
Query 490 -------------------------------------------------------------------------- 489
Sbjct 4219 TGTGCCCTCAGAGTAGAACTTTGAAACAGGACTGAAGCCCTTTTTACCTAGAACCATTTAAAAGCCTGAGCAAG 4292
Query 490 -------------------------------------------------------------------------- 489
Sbjct 4293 GACCACCACCCCCTCCCCACCAAATTATTCGGTCTCTTTCTGGGGGGCCCAGCTTACTGTATGTTACAAGTCTT 4366
Query 490 -------------------------------------------------------------------------- 489
Sbjct 4367 TGAAATGGGTCTGGTGTCTTCAGCTCCTGAAATGCTAATTTACCCCTTACCTAAGGAGTGTAGTTATAATACAG 4440
Query 490 -------------------------------------------------------------------------- 489
Sbjct 4441 AGTTGGTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTC 4514
Query 490 -------------------------------------------------------------------------- 489
Sbjct 4515 ATTCCCTCTGTCCGTCTCTCCTTCCCTCCTTCCCTCCTTCCTTCCTTTTTGTCTTTGTTTCTTTCTCTGGCCCC 4588
Query 490 -------------------------------------------------------------------------- 489
Sbjct 4589 CTGTCCTCTCTCTCTGTCTCATCCCCTTTTCCCACTTTCCTTCTGTCTCTCCTTCCTCCCTTCCTTTACAGTTT 4662
Query 490 -------------------------------------------------------------------------- 489
Sbjct 4663 AAAAAAAAAATCTAAAAATAGTTAAGCACTGTGTCAAAGAGTGTTTCAAAAGAATTGTTTGTTTTCTCATTTCT 4736
Query 490 -------------------------------------------------------------------------- 489
Sbjct 4737 TAAACCAGAAGTTTATGACAAATAAATATGCCATGTAATATGAAAGCTGCTTCAGCTTTTTATGAGCTTTCACA 4810
Query 490 -------------------------------------------------------------------------- 489
Sbjct 4811 TTCCTTGTTTGTCCTTTTAATTTGTTTCTTGATATATGAAGACTATAAACTTGAAACAAAGAGTTAGCTGTCAG 4884
Query 490 -------------------------------------------------------------------------- 489
Sbjct 4885 CTCTTGATAATATAATTGGGGAAACAGAATAGATATTTTATGATATGATAATTCTGATGATCTAAAGATAATGT 4958
Query 490 -------------------------------------------------------------------------- 489
Sbjct 4959 CTTAGACAATTACCTTTACATTTCAAGCTCTGGGATATAAATTACGTAGTCAGCATTAAGATAGTATTATTTTT 5032
Query 490 -------------------------------------------------------------------------- 489
Sbjct 5033 AATTGCTACTAAGTGGTAACTTTTGTATTTTAATATCTTGCAAGGGCAAAGAAGGCATTTTTAAAATTCTAAAT 5106
Query 490 -------------------------------------------------------------------------- 489
Sbjct 5107 GCACACCTCCTAAGGTAAATAGTCTTTCAAAAATATCAGGCGTGCCAACTCTTGCTGAGTTTTGTTAAATCCTC 5180
Query 490 -------------------------------------------------------------------------- 489
Sbjct 5181 CTTAACTGTCTGCAGTGCCCCCTGACTTCTTTTAAATGGATGTGAATATATGTGGAAAACTAAATCCATTTATT 5254
Query 490 -------------------------------------------------------------------------- 489
Sbjct 5255 ATAAATGCCTTATCTTTACCCTTTGGGATCTTACTAAATGCATTTTACCTGCTACTATTTATTAAAAATGGAAG 5328
Query 490 -------------------------------------------------------------------------- 489
Sbjct 5329 CTGTCTTGAATTAGAGATACCTCACGTAAGGTAGGTTAAGCAGTCAAGTATTTCTTTAGGCTTATGTTCAGCAC 5402
Query 490 -------------------------------------------------------------------------- 489
Sbjct 5403 CTCAGCCCCCTACTGAGAAGTTAATTAATTCAGTCCAAAATGAAATTATAGGGCAGTTTGGTGCAATTTATGTT 5476
Query 490 -------------------------------------------------------------------------- 489
Sbjct 5477 AAATGCCATTTGAATGTAATCACCTGTGTTACCACGAATGAGGCACAACTATACTACATGGACAGAGTACTGCA 5550
Query 490 -------------------------------------------------------------------------- 489
Sbjct 5551 TTGCACCATGAGCAAGAACTGCTCTGCAAGAAAAATATCTGTCCCTGTGGTCTGAATTTATCAAAACTCATTTT 5624
Query 490 -------------------------------------------------------------------------- 489
Sbjct 5625 CTTGTTAAAGAGTGAATTATTGAATAGTAATTAAACTTTAACTGATGACCATTTATATTCTAGTAGCCATCTTC 5698
Query 490 -------------------------------------------------------------------------- 489
Sbjct 5699 ACTGTTAGTCTTAAATTATAATGTAAAGTTGACATTTTCCCCTTACATTTCAAAGGCATCACTATTTTTAAATG 5772
Query 490 -------------------------------------------------------------------------- 489
Sbjct 5773 TTTACATATGTTTACATGTTTGTGTGCAACTGCTTCATTGCTATTAATAGTTAAATGAAATCTGCATATTCTGG 5846
Query 490 -------------------------------------------------------------------------- 489
Sbjct 5847 ATCATAGATGTTCTTAGTTAACTCTGGGAAAGATGTTACCTTTGGGTTTTTAAAAGACAAGTCATCATTTGAAA 5920
Query 490 -------------------------------------------------------------------------- 489
Sbjct 5921 ATATATTAGGGTGTGTTGATTTTCTGACATGCTTGTGTAATTGGCTTTGTTTATAATTTTTATTTTTTAATATG 5994
Query 490 -------------------------------------------------------------------------- 489
Sbjct 5995 GGTCAGACTTTTGGATTAAAAAGTATTATATCATGGACATACATTTTTTAAAGTACCAAAGGTATTTGGTAAGC 6068
Query 490 -------------------------------------------------------------------------- 489
Sbjct 6069 GAGCCCAAGTCATGTAATTGAAACTTCTGTACATTAAAAGAACTGATTCATGAAGACGTTTTCTAACTTTTTCT 6142
Query 490 -------------------------------------------------------------------------- 489
Sbjct 6143 CTTTAAGTGCTCCTCTAGACTAGACTGATTGAAGTAGACAGTGTGGTGGAATCAGTTTAATCAGAAAAAGACAT 6216
Query 490 -------------------------------------------------------------------------- 489
Sbjct 6217 ACCAAGTAGCTGGTGCTAATTATTATAAGACTAACATTCTGATAAGCCATGGTATAATTAACATTATTAAAATG 6290
Query 490 -------------------------------------------------------------------------- 489
Sbjct 6291 TTTACATATAATCCTTCTTAAAGTATACTCTTTTAAAAATCCATTGACATAACCTTACTTTTAGTTTAGTGATC 6364
Query 490 -------------------------------------------------------------------------- 489
Sbjct 6365 CAGAATTTCCCCAGAGCTTAAGCCACTGCAGTAAATTAGGTACGTAGGATATTCAGTCGCTACTAGCCACAAGG 6438
Query 490 -------------------------------------------------------------------------- 489
Sbjct 6439 AGTCTCCTTATTTTAATGTACCTCCCTCAGTACTTTATTCCTGCAGAGCGCCTCAGAGTGGGGGAGAGAAATGA 6512
Query 490 -------------------------------------------------------------------------- 489
Sbjct 6513 GCAATCCTGGCTCAGTTGGATTATTTCAGCATTTTATTTCTAAATCTGTAGTGTGATCAGAAATATTTAAAATT 6586
Query 490 -------------------------------------------------------------------------- 489
Sbjct 6587 AAAAAAATACTTTACAGAGAGAGGCCTACTAATCAATGTGCTTAGAGAAACAAACTACCTTTACATTCAATTAA 6660
Query 490 -------------------------------------------------------------------------- 489
Sbjct 6661 CAACAAAAAAAGTTACAGAAATTTTAACAAACATTTTTCTTTATCTGAGTATGGGAGAAAATACTAATGCTGAC 6734
Query 490 -------------------------------------------------------------------------- 489
Sbjct 6735 ACGTTTAATAATTAGAAAAGATCATTCCAGATCTTATGGAAAATTGTGTTTTAAATTCCAGCAGTTTGCTCTTG 6808
Query 490 -------------------------------------------------------------------------- 489
Sbjct 6809 AGACATGGTAATCTCTTAATGTAACTACTAAAGGAGAGGTAGATTGAAAAGATCTTGTATATACATAATTATGT 6882
Query 490 --------------------------------------------- 489
Sbjct 6883 CAGATGGTTCAAGATATCAAAATAAATTGTTTTGTTGAAAATGAA 6927
