Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14553
- Subject:
- XR_001744857.1
- Aligned Length:
- 4779
- Identities:
- 2145
- Gaps:
- 2614
Alignment
Query 1 --------ATGGCGGCGCTGAGCGGTGGCGGTGGTGGCGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGAC 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTTATAAGATGGCGGCGCTGAGCGGTGGCGGTGGTGGCGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGAC 74
Query 67 ATGGAGCCCGAGGCCGGCGCCGGCGCCGGCGCCGCGGCCTCTTCGGCTGCGGACCCTGCCATTCCGGAGGAGGT 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 ATGGAGCCCGAGGCCGGCGCCGGCGCCGGCGCCGCGGCCTCTTCGGCTGCGGACCCTGCCATTCCGGAGGAGGT 148
Query 141 GTGGAATATCAAACAAATGATTAAGTTGACACAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGGGAGC 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GTGGAATATCAAACAAATGATTAAGTTGACACAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGGGAGC 222
Query 215 ATAATCCACCATCAATATATCTGGAGGCCTATGAAGAATACACCAGCAAGCTAGATGCACTCCAACAAAGAGAA 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 ATAATCCACCATCAATATATCTGGAGGCCTATGAAGAATACACCAGCAAGCTAGATGCACTCCAACAAAGAGAA 296
Query 289 CAACAGTTATTGGAATCTCTGGGGAACGGAACTGATTTTTCTGTTTCTAGCTCTGCATCAATGGATACCGTTAC 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CAACAGTTATTGGAATCTCTGGGGAACGGAACTGATTTTTCTGTTTCTAGCTCTGCATCAATGGATACCGTTAC 370
Query 363 ATCTTCTTCCTCTTCTAGCCTTTCAGTGCTACCTTCATCTCTTTCAGTTTTTCAAAATCCCACAGATGTGGCAC 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ATCTTCTTCCTCTTCTAGCCTTTCAGTGCTACCTTCATCTCTTTCAGTTTTTCAAAATCCCACAGATGTGGCAC 444
Query 437 GGAGCAACCCCAAGTCACCACAAAAACCTATCGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCT 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GGAGCAACCCCAAGTCACCACAAAAACCTATCGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCT 518
Query 511 GCAAGGTGTGGAGTTACAGTCCGAGACAGTCTAAAGAAAGCACTGATGATGAGAGGTCTAATCCCAGAGTGCTG 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GCAAGGTGTGGAGTTACAGTCCGAGACAGTCTAAAGAAAGCACTGATGATGAGAGGTCTAATCCCAGAGTGCTG 592
Query 585 TGCTGTTTACAGAATTCATGATG-----------------------------GGTCTTTTCTGGAGCTGACT-- 627
||||||||||||||||||.|||| |.|.|||.||| |||.|||
Sbjct 593 TGCTGTTTACAGAATTCAGGATGGAGAGAAGAAACCAATTGGTTGGGACACTGATATTTCCTG--GCTTACTGG 664
Query 628 TGAAGAA----------AAGAGT------------------------ACATCTCTTTAC--------------- 652
.|||||| |||.|| |||.||.|.|||
Sbjct 665 AGAAGAATTGCATGTGGAAGTGTTGGAGAATGTTCCACTTACAACACACAACTTTGTACGAAAAACGTTTTTCA 738
Query 653 CCT-------------------------GCTGTTTGTCCAAG--------AGTGATACAT----TTAT------ 683
||| ||||.||.||||.| .||.|.|||| ||||
Sbjct 739 CCTTAGCATTTTGTGACTTTTGTCGAAAGCTGCTTTTCCAGGGTTTCCGCTGTCAAACATGTGGTTATAAATTT 812
Query 684 --------TTG--GGAGAGAAGTTCCACTGATGTGTGTTAATTATGACCAACTTGATTTGCTGTTTGTCTCCAA 747
||| |.|.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 CACCAGCGTTGTAGTACAGAAGTTCCACTGATGTGTGTTAATTATGACCAACTTGATTTGCTGTTTGTCTCCAA 886
Query 748 GTTCTTTGAACACCACCCAATACCACAGGAAGAGGCGTCCTTAGCAGAGACTGCCCTAACATCTGGATCATCCC 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 GTTCTTTGAACACCACCCAATACCACAGGAAGAGGCGTCCTTAGCAGAGACTGCCCTAACATCTGGATCATCCC 960
Query 822 CTTCCGCACCCGCCTCGGACTCTATTGGGCCCCAAATTCTCACCAGTCCGTCTCCTTCAAAATCCATTCCAATT 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CTTCCGCACCCGCCTCGGACTCTATTGGGCCCCAAATTCTCACCAGTCCGTCTCCTTCAAAATCCATTCCAATT 1034
Query 896 CCACAGCCCTTCCGACCAGCAGATGAAGATCATCGAAATCAATTTGGGCAACGAGACCGATCCTCATCAGCTCC 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 CCACAGCCCTTCCGACCAGCAGATGAAGATCATCGAAATCAATTTGGGCAACGAGACCGATCCTCATCAGCTCC 1108
Query 970 CAATGTGCATATAAACACAATAGAACCTGTCAATATTGATGACTTGATTAGAGACCAAGGATTTCGTGGTGATG 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 CAATGTGCATATAAACACAATAGAACCTGTCAATATTGATGACTTGATTAGAGACCAAGGATTTCGTGGTGATG 1182
Query 1044 -------------------------------------------------------------------------- 1043
Sbjct 1183 GAGCCCCTTTGAACCAGCTGATGCGCTGTCTTCGGAAATACCAATCCCGGACTCCCAGTCCCCTCCTACATTCT 1256
Query 1044 ----------------------------------------------GAGGATCAACCACAGGTTTGTCTGCTAC 1071
||||||||||||||||||||||||||||
Sbjct 1257 GTCCCCAGTGAAATAGTGTTTGATTTTGAGCCTGGCCCAGTGTTCAGAGGATCAACCACAGGTTTGTCTGCTAC 1330
Query 1072 CCCCCCTGCCTCATTACCTGGCTCACTAACTAACGTGAAAGCCTTACAGAAATCTCCAGGACCTCAGCGAGAAA 1145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1331 CCCCCCTGCCTCATTACCTGGCTCACTAACTAACGTGAAAGCCTTACAGAAATCTCCAGGACCTCAGCGAGAAA 1404
Query 1146 GGAAGTCATCTTCATCCTCAGAAGACAGGAATCGAATGAAAACACTTGGTAGACGGGACTCGAGTGATGATTGG 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1405 GGAAGTCATCTTCATCCTCAGAAGACAGGAATCGAATGAAAACACTTGGTAGACGGGACTCGAGTGATGATTGG 1478
Query 1220 GAGATTCCTGATGGGCAGATTACAGTGGGACAAAGAATTGGATCTGGATCATTTGGAACAGTCTACAAGGGAAA 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1479 GAGATTCCTGATGGGCAGATTACAGTGGGACAAAGAATTGGATCTGGATCATTTGGAACAGTCTACAAGGGAAA 1552
Query 1294 GTGGCATGGTGATGTGGCAGTGAAAATGTTGAATGTGACAGCACCTACACCTCAGCAGTTACAAGCCTTCAAAA 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 GTGGCATGGTGATGTGGCAGTGAAAATGTTGAATGTGACAGCACCTACACCTCAGCAGTTACAAGCCTTCAAAA 1626
Query 1368 ATGAAGTAGGAGTACTCAGGAAAACACGACATGTGAATATCCTACTCTTCATGGGCTATTCCACAAAGCCACAA 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1627 ATGAAGTAGGAGTACTCAGGAAAACACGACATGTGAATATCCTACTCTTCATGGGCTATTCCACAAAGCCACAA 1700
Query 1442 CTGGCTATTGTTACCCAGTCGTGTGAAGGACTCCCAGCTTGTATCACCATCTCCATATCATTGAGACCAAATTT 1515
|||||||||||||||||||.||||| |||.|| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1701 CTGGCTATTGTTACCCAGTGGTGTG-AGGGCT-CCAGCTTGTATCACCATCTCCATATCATTGAGACCAAATTT 1772
Query 1516 GAGATGATCAAACTTATAGATATTGCACGACAGACTGCACAGGGCATGGATTACTTACACGCCAAGTCAATCAT 1589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1773 GAGATGATCAAACTTATAGATATTGCACGACAGACTGCACAGGGCATGGATTACTTACACGCCAAGTCAATCAT 1846
Query 1590 CCACAGAGACCTCAAGAGTAATAATATATTTCTTCATGAAGACCTCACAGTAAAAATAGGTGATTTTGGTCTAG 1663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1847 CCACAGAGACCTCAAGAGTAATAATATATTTCTTCATGAAGACCTCACAGTAAAAATAGGTGATTTTGGTCTAG 1920
Query 1664 CTACAGTGAAATCTCGATGGAGTGGGTCCCATCAGTTTGAACAGTTGTCTGGATCCATTTTGTGGATGGCACCA 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 CTACAGTGAAATCTCGATGGAGTGGGTCCCATCAGTTTGAACAGTTGTCTGGATCCATTTTGTGGATGGCACCA 1994
Query 1738 GAAGTCATCAGAATGCAAGATAAAAATCCATACAGCTTTCAGTCAGATGTATATGCATTTGGAATTGTTCTGTA 1811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1995 GAAGTCATCAGAATGCAAGATAAAAATCCATACAGCTTTCAGTCAGATGTATATGCATTTGGAATTGTTCTGTA 2068
Query 1812 TGAATTGATGACTGGACAGTTACCTTATTCAAACATCAACAACAGGGACCA----------------------- 1862
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2069 TGAATTGATGACTGGACAGTTACCTTATTCAAACATCAACAACAGGGACCAGGTGCTTTGTCCTCCATGGGAGT 2142
Query 1863 -----------------------------------------------------------GATAATTTTTATGGT 1877
|||||||||||||||
Sbjct 2143 ATAATAAATGATGTGGCAAGGGCTTACTCTCCATGAGAGGAATGTGTGACCAACAGAAGGATAATTTTTATGGT 2216
Query 1878 GGGACGAGGATACCTGTCTCCAGATCTCAGTAAGGTACGGAGTAACTGTCCAAAAGCCATGAAGAGATTAATGG 1951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2217 GGGACGAGGATACCTGTCTCCAGATCTCAGTAAGGTACGGAGTAACTGTCCAAAAGCCATGAAGAGATTAATGG 2290
Query 1952 CAGAGTGCCTCAAAAAGAAAAGAGATGAGAGACCACTCTTTCCCCAAATTCTCGCCTCTATTGAGCTGCTGGCC 2025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2291 CAGAGTGCCTCAAAAAGAAAAGAGATGAGAGACCACTCTTTCCCCAAATTCTCGCCTCTATTGAGCTGCTGGCC 2364
Query 2026 CGCTCATTGCCAAAAATTCACCGCAGTGCATCAGAACCCTCCTTGAATCGGGCTGGTTTCCAAACAGAGGATTT 2099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2365 CGCTCATTGCCAAAAATTCACCGCAGTGCATCAGAACCCTCCTTGAATCGGGCTGGTTTCCAAACAGAGGATTT 2438
Query 2100 TAGTCTATATGCTTGTGCTTCTCCAAAAACACCCATCCAGGCAGGGGGATATGGTGCGTTTCCTGTCCAC---- 2169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2439 TAGTCTATATGCTTGTGCTTCTCCAAAAACACCCATCCAGGCAGGGGGATATGGTGCGTTTCCTGTCCACTGAA 2512
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 2513 ACAAATGAGTGAGAGAGTTCAGGAGAGTAGCAACAAAAGGAAAATAAATGAACATATGTTTGCTTATATGTTAA 2586
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 2587 ATTGAATAAAATACTCTCTTTTTTTTTAAGGTGAACCAAAGAACACTTGTGTGGTTAAAGACTAGATATAATTT 2660
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 2661 TTCCCCAAACTAAAATTTATACTTAACATTGGATTTTTAACATCCAAGGGTTAAAATACATAGACATTGCTAAA 2734
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 2735 AATTGGCAGAGCCTCTTCTAGAGGCTTTACTTTCTGTTCCGGGTTTGTATCATTCACTTGGTTATTTTAAGTAG 2808
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 2809 TAAACTTCAGTTTCTCATGCAACTTTTGTTGCCAGCTATCACATGTCCACTAGGGACTCCAGAAGAAGACCCTA 2882
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 2883 CCTATGCCTGTGTTTGCAGGTGAGAAGTTGGCAGTCGGTTAGCCTGGGTTAGATAAGGCAAACTGAACAGATCT 2956
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 2957 AATTTAGGAAGTCAGTAGAATTTAATAATTCTATTATTATTCTTAATAATTTTTCTATAACTATTTCTTTTTAT 3030
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 3031 AACAATTTGGAAAATGTGGATGTCTTTTATTTCCTTGAAGCAATAAACTAAGTTTCTTTTTATAAATTTTGAGT 3104
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 3105 GCAGGTGACCAAAAATATTGCTGAGGAGTGGCACGTTTGACATGAGTAAAATGTCTTAACTTCGGATTTTTAGC 3178
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 3179 GGGAAAATGTTATAAATTGGAGTTTCTTTTAAATAGCTTTTTTTAAAATACATTAAGGATGTCTCGCTCATGTA 3252
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 3253 GAAGTCAAATTTTGTTGCAAACGCATTGCTCCCTTCACACCCAATCTCTCCCCTGCAAAAAATCTTCACAGAAT 3326
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 3327 TCTGTGAGAACTTTTAGGTGTGTTTTTCTTTGAGATACCTCTGGTTGCCAAACACCAGGTAATAGATTTTTTAA 3400
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 3401 AGTTGTTATTAGATTATTCTTACCTCTCATGATGCATATTTTAGCAATCACCTTATCATTGTGTCTCATGTTCT 3474
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 3475 GTCCTCCTTATATTCTTTGCCCAGCAAGATTCTACTTATGATGAATGAATGCTCTTCTCCTTTTTTCATTCAAT 3548
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 3549 GGTATGAAGTATTTGTTAGGGTTCTTTAGTACTTACACTTTGTTGTGTAGAAAATGACTGTAATGTGGTGGTCA 3622
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 3623 GTGTATTCTTACTGTGATTCAGAGGGAATCAAAAGTAGAAAGCAACAGCACGTGGTCCTATCAAAGATTTGGCC 3696
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 3697 ATCTCTGCTTCACTGTCAGCCTCTTAACTATATCTTCACTTACTCAATTTGGTTTTGTCATGATTTTTAAATGT 3770
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 3771 AGCCAATAGATCAAGGTTCTTCCAGTAAACACATATCTGCATAAATGCCTCCTTGAAGTCAATAAAGAAGGAAA 3844
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 3845 TTGAGAAGACTTTAAATTAATGATAATTTAGTTTTTAAGTACCCACAAATAAATTTTTGAAACATTTTCTTTAT 3918
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 3919 TTGAATACTTAGATGTCATCCAGGAAAATCACTCAATAATAATTACGGCAAATCTTTAACCCCTCATTTGGGTA 3992
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 3993 GCTTAAGATAAGTAATGCCATTATGAATCAGAATTGATTCATGACTTTAGTTAAGAAAATGAAAAGGAACATTT 4066
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 4067 CACGTATTTTTAAAAATGATACTAAGGAATAAAGAAGTACAACTATTGGAAAATATCTAAGTATATGATTTTTA 4140
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 4141 AATCCTCCAGTGGCATTAAATATATGATTATTAGTAATTGTTAGATAGGGTTTTATTCATTCACAAATAGAAGA 4214
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 4215 CTAGCAAGCATGTAACTAACAAAGTTTTTACAAAATTGACTTTGTGGAATGCTCCAAATGTTTGGCCATTTTGA 4288
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 4289 GGCACAAGGTCAGGGGTCTCTTTATTGATAGAGCTCCTTCTATAATTTCCCAGCATACCTGCCTCACAGTTATC 4362
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 4363 TTCCTTTCATTGTTCACTCTCTTTTTCTTCTCAATGCCATCCTGCCTAGGCTCCCATCATCTGCATCTGACACC 4436
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 4437 TTTCCTTTCTTTCTTTACTAGTCTCCTTTGCGATGGGTGTGGCTAAGCTCTGTAGAGCCACTCAGAAACTCATT 4510
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 4511 GTTCCATTCTGTAGCCAGTAAAACATGCCTCCAAAGTGTCACAGAGTAATTCTACTCTCTCTTTTAAATTAGGT 4584
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 4585 CCACCGGAAATGTTAGTGAAAGGACATTAAAAATGTGACAGGTGACATGTTTAGCTAACATGGATCTGGAGAAA 4658
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 4659 TAGGAAGCAGTAGAATTAAATGTTTCCCTTTCAGGTTTAATTGTATTTGTTCTTGGGTTTTGTTTTATACTGAG 4732
Query 2170 ------------------------------------------- 2169
Sbjct 4733 TTTTAAATATATTCTCCAAATAAAAACATTATTTTTTCTAACC 4775
