Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14553
- Subject:
- XR_001785085.1
- Aligned Length:
- 2736
- Identities:
- 1050
- Gaps:
- 1581
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCATGGAAACTGTGCGGGTAGAAACGTGTGAGCGCGAGGGTGGTTGGAGGAGAAGGAACACTCCCCTGGCGACA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCGGCGCGAGGGTGCTCCTCGGATGACGTCACGCACCCAGGTGACGTCACGACCGTGACATGCGGGTGACGCCG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTGCCGCGGCGACTCCTCGTCGTCTCCGCCCCCTCCCCCCCCCAAATCCCCTCAGGCTCGGCTGCGCCGGGGCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCCGGCGGGTTCCAGAGGTGGCCTCCGCCCCGGCCGCTCCGCCCACGCCCCCCGCGCCTCCGCGCCCGCCTCCG 296
Query 1 --------------------------------------------------------------------ATGGCG 6
||||||
Sbjct 297 CCCGCCCTGCGCCTCCCTTCCCCCTCCCCGCCCCGCGGCGGCCGCTCGGCCCGGCTCGCGCTTCGAAGATGGCG 370
Query 7 GCGCTGA------------------------------------------------GCGGTGGCGGT-------- 24
||||||| |||||||||||
Sbjct 371 GCGCTGAGTGGCGGCGGTGGCAGCAGCAGCGGTGGCGGCGGCGGCGGTGGCGGCGGCGGTGGCGGTGGCGACGG 444
Query 25 -GGTGGCGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGACATGGAGCCCGAGGCCGGCGCCGGCGCCGGCG 97
||.||||||||.||||.||||||||||||||||||.||.|||||||||||.||| ||||||||.||||
Sbjct 445 CGGCGGCGGCGCCGAGCAGGGCCAGGCTCTGTTCAATGGCGACATGGAGCCGGAG------GCCGGCGCTGGCG 512
Query 98 CCGCGGCCTCTTCGGCTGCGGACCCTGCCATTCCGGAGGAGGTGTGGAATATCAAACAAATGATTAAGTTGACA 171
|||||||||||||||||||||||||.||||||||.||.|||||.|||||||||||.||||||||||||||||||
Sbjct 513 CCGCGGCCTCTTCGGCTGCGGACCCGGCCATTCCTGAAGAGGTATGGAATATCAAGCAAATGATTAAGTTGACA 586
Query 172 CAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGGGAGCATAATCCACCATCAATATATCTGGAGGCCTA 245
||||||||||||||||||||||||||||||||||||||.||||||||.||||||||||||||.|||||||||||
Sbjct 587 CAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGAGAGCATAACCCACCATCAATATACCTGGAGGCCTA 660
Query 246 TGAAGAATACACCAGCAAGCTAGATGCACTCCAACAAAGAGAACAACAGTTATTGGAATCTCTGGGGAACGGAA 319
||||||.||||||||||||||||||||.||.||.|||||||||||.|||.|.||||||||.|||||.||.|||.
Sbjct 661 TGAAGAGTACACCAGCAAGCTAGATGCCCTTCAGCAAAGAGAACAGCAGCTTTTGGAATCCCTGGGTAATGGAG 734
Query 320 CTGATTTTTCTGTTTCTAGCTCTGCATCAATGGATACCGTTACATCTTCTTCCTCTTCTAGCCTTTCAGTGCTA 393
|.||||||||||||||||||||||||||||||||.|||||||||||.||.||||||||||||||||||||||||
Sbjct 735 CAGATTTTTCTGTTTCTAGCTCTGCATCAATGGACACCGTTACATCCTCCTCCTCTTCTAGCCTTTCAGTGCTA 808
Query 394 CCTTCATCTCTTTCAGTTTTTCAAAATCCCACAGATGTGGCACGGAGCAACCCCAAGTCACCACAAAAACCTAT 467
||.||||||||||||||||||||||.|||||||||||...||||||.||||||||||||||||||.||||||||
Sbjct 809 CCATCATCTCTTTCAGTTTTTCAAACTCCCACAGATGCATCACGGAACAACCCCAAGTCACCACAGAAACCTAT 882
Query 468 CGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCTGCAAGGTGTGGAGTTACAGTCCGAGACAGTC 541
||||||||||||||||||||||||||||||||||||||||||.|||||.|||||.||||||||.||||||||||
Sbjct 883 CGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCCGCAAGATGTGGTGTTACAGTTCGAGACAGTC 956
Query 542 TAAAGAAAGCACTGATGATGAGAGGTCTAATCCCAGAGTGCTGTGCTGTTTACAGAATTCATGATGGGTCT--- 612
||||||||||||||||||||||||||||.||||||||.|||||||||||||||||||||||.|||||||.|
Sbjct 957 TAAAGAAAGCACTGATGATGAGAGGTCTCATCCCAGAATGCTGTGCTGTTTACAGAATTCAGGATGGGTATGGT 1030
Query 613 -------------------------------------------TTTCTGGAGCTGA-------CTTGAAGAA-- 634
||.||||||..|| .||||||.|
Sbjct 1031 TTAGAGAAGAAACCAATTGGCTGGGACACGGACATTTCCTGGCTTACTGGAGAGGAGTTACATGTTGAAGTACT 1104
Query 635 -AAGAGT----------------ACATCT------------CTTT----ACC---------------------- 653
.|||.| |||.|| |||| |||
Sbjct 1105 GGAGAATGTCCCACTTACAACACACAACTTTGTACGGAAAACTTTTTTCACCTTAGCATTTTGTGACTTTTGCC 1178
Query 654 -----CTGCTGT-------------TTGTCCAAGA----GTGATACATTT--------ATTTGGGAGAGAAGTT 697
|||||.| |||||.||.| ||.|||.|||| .|.|.|.|.|||.|||
Sbjct 1179 GAAAGCTGCTTTTCCAGGGTTTCCGTTGTCAAACATGTGGTTATAAATTTCACCAGCGTTGTAGTACAGAGGTT 1252
Query 698 CCACTGATGTGTGTTAATTATGACCAACTTGATTTGCTGTTTGTCTCCAAGTTCTTTGAACACCACCCAATACC 771
||||||||||||||.||||||||||||||||| ||||||||.||.||||||.||||
Sbjct 1253 CCACTGATGTGTGTAAATTATGACCAACTTGA-------------------TTCTTTGAGCATCACCCAGTACC 1307
Query 772 ACAGGAAGAGGCGTCCTTAGCAGAGACTGCCCTAACATCTGGATCATCCCCTTCCGCACCCGCCTCGGACTCTA 845
||||||.|||||.|||||..|||||||||||||..||||||| ||||.|||||||||||.||||.|||||||
Sbjct 1308 ACAGGAGGAGGCCTCCTTCCCAGAGACTGCCCTTCCATCTGG---ATCCTCTTCCGCACCCCCCTCAGACTCTA 1378
Query 846 TTGGGCCCCAAATTCTCACCAGTCCGTCTCCTTCAAAATCCATTCCAATTCCACAGCCCTTCCGACCAGCAGAT 919
.||||||||||||.|||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CTGGGCCCCAAATCCTCACCAGTCCATCTCCTTCAAAATCCATTCCAATTCCACAGCCCTTCCGACCAGCAGAT 1452
Query 920 GAAGATCATCGAAATCAATTTGGGCAACGAGACCGATCCTCATCAGCTCCCAATGTGCATATAAACACAATAGA 993
|||||||||||.|||||.|||||||||||||||||.|||||.||||||||||||||.||||||||||||||.||
Sbjct 1453 GAAGATCATCGCAATCAGTTTGGGCAACGAGACCGGTCCTCCTCAGCTCCCAATGTTCATATAAACACAATTGA 1526
Query 994 ACCTGTCAATATTGATGACTTGATTAGAGACCAAGGATTTCGTGGTGATGGAGGATCAACCACAGGTTTGTCTG 1067
.|||||.|||||.|||||.||||||||||||||.||.|||||||||||||||||.|||||||||||.|||||.|
Sbjct 1527 GCCTGTGAATATCGATGATTTGATTAGAGACCAGGGGTTTCGTGGTGATGGAGGGTCAACCACAGGCTTGTCCG 1600
Query 1068 CTACCCCCCCTGCCTCATTACCTGGCTCACTAACTAACGTGAAAGCCTTACAGAAATCTCCAGGACCTCAGCGA 1141
|.|||||.|||||||||||||||||||||||.||||||||||||||||||||||||||||||||.||||||||.
Sbjct 1601 CCACCCCGCCTGCCTCATTACCTGGCTCACTCACTAACGTGAAAGCCTTACAGAAATCTCCAGGTCCTCAGCGG 1674
Query 1142 GAAAGGAAGTCATCT------TCATCCTCAGAAGACAGGAATCGAATGAAAACACTTGGTAGACGGGACTCGAG 1209
||||||||||||||| ||||||||.||.|||||.|.|||.|||
Sbjct 1675 GAAAGGAAGTCATCTTCTTCCTCATCCTCGGAGGACAGAAGTCGGATG-------------------------- 1722
Query 1210 TGATGATTGGGAGATTCCTGATGGGCAGATTACAGTGGGACAAAGAATTGGATCTGGATCATTTGGAACAGTCT 1283
Sbjct 1723 -------------------------------------------------------------------------- 1722
Query 1284 ACAAGGGAAAGTGGCATGGTGATGTGGCAGTGAAAATGTTGAATGTGACAGCACCTACACCTCAGCAGTTACAA 1357
Sbjct 1723 -------------------------------------------------------------------------- 1722
Query 1358 GCCTTCAAAAATGAAGTAGGAGTACTCAGGAAAACACGACATGTGAATATCCTACTCTTCATGGGCTATTCCAC 1431
Sbjct 1723 -------------------------------------------------------------------------- 1722
Query 1432 AAAGCCACAACTGGCTATTGTTACCCAGTCGTGTGAAGGACTCCCAGCTTGTATCACCATCTCCATATCATTGA 1505
Sbjct 1723 -------------------------------------------------------------------------- 1722
Query 1506 GACCAAATTTGAGATGATCAAACTTATAGATATTGCACGACAGACTGCACAGGGCATGGATTACTTACACGCCA 1579
Sbjct 1723 -------------------------------------------------------------------------- 1722
Query 1580 AGTCAATCATCCACAGAGACCTCAAGAGTAATAATATATTTCTTCATGAAGACCTCACAGTAAAAATAGGTGAT 1653
Sbjct 1723 -------------------------------------------------------------------------- 1722
Query 1654 TTTGGTCTAGCTACAGTGAAATCTCGATGGAGTGGGTCCCATCAGTTTGAACAGTTGTCTGGATCCATTTTGTG 1727
Sbjct 1723 -------------------------------------------------------------------------- 1722
Query 1728 GATGGCACCAGAAGTCATCAGAATGCAAGATAAAAATCCATACAGCTTTCAGTCAGATGTATATGCATTTGGAA 1801
Sbjct 1723 -------------------------------------------------------------------------- 1722
Query 1802 TTGTTCTGTATGAATTGATGACTGGACAGTTACCTTATTCAAACATCAACAACAGGGACCAGATAATTTTTATG 1875
Sbjct 1723 -------------------------------------------------------------------------- 1722
Query 1876 GTGGGACGAGGATACCTGTCTCCAGATCTCAGTAAGGTACGGAGTAACTGTCCAAAAGCCATGAAGAGATTAAT 1949
Sbjct 1723 -------------------------------------------------------------------------- 1722
Query 1950 GGCAGAGTGCCTCAAAAAGAAAAGAGATGAGAGACCACTCTTTCCCCAAATTCTCGCCTCTATTGAGCTGCTGG 2023
Sbjct 1723 -------------------------------------------------------------------------- 1722
Query 2024 CCCGCTCATTGCCAAAAATTCACCGCAGTGCATCAGAACCCTCCTTGAATCGGGCTGGTTTCCAAACAGAGGAT 2097
Sbjct 1723 -------------------------------------------------------------------------- 1722
Query 2098 TTTAGTCTATATGCTTGTGCTTCTCCAAAAACACCCATCCAGGCAGGGGGATATGGTGCGTTTCCTGTCCAC 2169
Sbjct 1723 ------------------------------------------------------------------------ 1722
