Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14553
- Subject:
- XR_001785086.1
- Aligned Length:
- 2740
- Identities:
- 958
- Gaps:
- 1684
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCCATGGAAACTGTGCGGGTAGAAACGTGTGAGCGCGAGGGTGGTTGGAGGAGAAGGAACACTCCCCTGGCGAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGCGGCGCGAGGGTGCTCCTCGGATGACGTCACGCACCCAGGTGACGTCACGACCGTGACATGCGGGTGACGCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTTGCCGCGGCGACTCCTCGTCGTCTCCGCCCCCTCCCCCCCCCAAATCCCCTCAGGCTCGGCTGCGCCGGGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGCCGGCGGGTTCCAGAGGTGGCCTCCGCCCCGGCCGCTCCGCCCACGCCCCCCGCGCCTCCGCGCCCGCCTCC 296
Query 1 ---------------------------------------------------------------------ATGGC 5
|||||
Sbjct 297 GCCCGCCCTGCGCCTCCCTTCCCCCTCCCCGCCCCGCGGCGGCCGCTCGGCCCGGCTCGCGCTTCGAAGATGGC 370
Query 6 GGCGCTGA------------------------------------------------GCGGTGGCGGT------- 24
|||||||| |||||||||||
Sbjct 371 GGCGCTGAGTGGCGGCGGTGGCAGCAGCAGCGGTGGCGGCGGCGGCGGTGGCGGCGGCGGTGGCGGTGGCGACG 444
Query 25 --GGTGGCGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGACATGGAGCCCGAGGCCGGCGCCGGCGCCGGC 96
||.||||||||.||||.||||||||||||||||||.||.|||||||||||.||| ||||||||.|||
Sbjct 445 GCGGCGGCGGCGCCGAGCAGGGCCAGGCTCTGTTCAATGGCGACATGGAGCCGGAG------GCCGGCGCTGGC 512
Query 97 GCCGCGGCCTCTTCGGCTGCGGACCCTGCCATTCCGGAGGAGGTGTGGAATATCAAACAAATGATTAAGTTGAC 170
||||||||||||||||||||||||||.||||||||.||.|||||.|||||||||||.|||||||||||||||||
Sbjct 513 GCCGCGGCCTCTTCGGCTGCGGACCCGGCCATTCCTGAAGAGGTATGGAATATCAAGCAAATGATTAAGTTGAC 586
Query 171 ACAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGGGAGCATAATCCACCATCAATATATCTGGAGGCCT 244
|||||||||||||||||||||||||||||||||||||||.||||||||.||||||||||||||.||||||||||
Sbjct 587 ACAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGAGAGCATAACCCACCATCAATATACCTGGAGGCCT 660
Query 245 ATGAAGAATACACCAGCAAGCTAGATGCACTCCAACAAAGAGAACAACAGTTATTGGAATCTCTGGGGAACGGA 318
|||||||.||||||||||||||||||||.||.||.|||||||||||.|||.|.||||||||.|||||.||.|||
Sbjct 661 ATGAAGAGTACACCAGCAAGCTAGATGCCCTTCAGCAAAGAGAACAGCAGCTTTTGGAATCCCTGGGTAATGGA 734
Query 319 ACTGATTTTTCTGTTTCTAGCTCTGCATCAATGGATACCGTTACATCTTCTTCCTCTTCTAGCCTTTCAGTGCT 392
.|.||||||||||||||||||||||||||||||||.|||||||||||.||.|||||||||||||||||||||||
Sbjct 735 GCAGATTTTTCTGTTTCTAGCTCTGCATCAATGGACACCGTTACATCCTCCTCCTCTTCTAGCCTTTCAGTGCT 808
Query 393 ACCTTCATCTCTTTCAGTTTTTCAAAATCCCACAGATGTGGCACGGAGCAACCCCAAGTCACCACAAAAACCTA 466
|||.||||||||||||||||||||||.|||||||||||...||||||.||||||||||||||||||.|||||||
Sbjct 809 ACCATCATCTCTTTCAGTTTTTCAAACTCCCACAGATGCATCACGGAACAACCCCAAGTCACCACAGAAACCTA 882
Query 467 TCGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCTGCAAGGTGTGGAGTTACAGTCCGAGACAGT 540
|||||||||||||||||||||||||||||||||||||||||||.|||||.|||||.||||||||.|||||||||
Sbjct 883 TCGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCCGCAAGATGTGGTGTTACAGTTCGAGACAGT 956
Query 541 CTAAAGAAAGCACTGATGATGAGAGGTCTAATCCCAGAGTGCTGTGCTGTTTACAGAATTCATGATGGGTCT-- 612
|||||||||||||||||||||||||||||.||||||||.|||||||||||||||||||||||.|||||||.|
Sbjct 957 CTAAAGAAAGCACTGATGATGAGAGGTCTCATCCCAGAATGCTGTGCTGTTTACAGAATTCAGGATGGGTATGG 1030
Query 613 --------------------------------------------TTTCTGGAGCTGA-------CTTGAAGAA- 634
||.||||||..|| .||||||.|
Sbjct 1031 TTTAGAGAAGAAACCAATTGGCTGGGACACGGACATTTCCTGGCTTACTGGAGAGGAGTTACATGTTGAAGTAC 1104
Query 635 --AAGAGT----------------ACATCT------------CTTT----ACC--------------------- 653
.|||.| |||.|| |||| |||
Sbjct 1105 TGGAGAATGTCCCACTTACAACACACAACTTTGTACGGAAAACTTTTTTCACCTTAGCATTTTGTGACTTTTGC 1178
Query 654 ------CTGCTGT-------------TTGTCCAAGA----GTGATACATTT--------ATTTGGGAGAGAAGT 696
|||||.| |||||.||.| ||.|||.|||| .|.|.|.|.|||.||
Sbjct 1179 CGAAAGCTGCTTTTCCAGGGTTTCCGTTGTCAAACATGTGGTTATAAATTTCACCAGCGTTGTAGTACAGAGGT 1252
Query 697 TCCACTGATGTGTGTTAATTATGACCAACTTGATTTGCTGTTTGTCTCCAAGTTCTTTGAACACCACCCAATAC 770
|||||||||||||||.||||||||||||||||| ||||||||.||.||||||.|||
Sbjct 1253 TCCACTGATGTGTGTAAATTATGACCAACTTGA-------------------TTCTTTGAGCATCACCCAGTAC 1307
Query 771 CACAGGAAGAGGCGTCCTTAGCAGAGACTGCCCTAACATCTGGATCATCCCCTTCCGCACCCGCCTCGGACTCT 844
|||||||.|||||.|||||..|||||||||||||..||||||| ||||.|||||||||||.||||.||||||
Sbjct 1308 CACAGGAGGAGGCCTCCTTCCCAGAGACTGCCCTTCCATCTGG---ATCCTCTTCCGCACCCCCCTCAGACTCT 1378
Query 845 ATTGGGCCCCAAATTCTCACCAGTCCGTCTCCTTCAAAATCCATTCCAATTCCACAGCCCTTCCGACCAGCAGA 918
|.||||||||||||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 ACTGGGCCCCAAATCCTCACCAGTCCATCTCCTTCAAAATCCATTCCAATTCCACAGCCCTTCCGACCAGCAGA 1452
Query 919 TGAAGATCATCGAAATCAATTTGGGCAACGAGACCGATCCTCATCAGCTCCCAATGTGCATATAAACACAATAG 992
||||||||||||.|||||.|||||||||||||||||.|||||.||||||||||||||.||||||||||||||.|
Sbjct 1453 TGAAGATCATCGCAATCAGTTTGGGCAACGAGACCGGTCCTCCTCAGCTCCCAATGTTCATATAAACACAATTG 1526
Query 993 AACCTGTCAATATTGATGACTTGATTAGAGACCAAGGATTTCGTGGTGATGGAGGATCAACCACAGGTTTGTCT 1066
|.|||||.|||||.|||||.||||||||||||||.||.||||||||||||||||
Sbjct 1527 AGCCTGTGAATATCGATGATTTGATTAGAGACCAGGGGTTTCGTGGTGATGGAG-------------------- 1580
Query 1067 GCTACCCCCCCTGCCTCATTACCTGGCTCACTAACTAACGTGAAAGC-----CTTACAGAAAT----CTCCAGG 1131
|||||.|| |||.||| || |.|| ||| |.||||| .|||.||
Sbjct 1581 -----CCCCCTTG-------------------AACCAAC-TG-ATGCGCTGTCTT-CGGAAATACCAATCCCGG 1627
Query 1132 ACCTCAGCGAGAAAGGAAGTCATCTTCATCCTCAGAAGACAGGAATCGAATGAAAACACTTGGTAGACGGGACT 1205
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 1206 CGAGTGATGATTGGGAGATTCCTGATGGGCAGATTACAGTGGGACAAAGAATTGGATCTGGATCATTTGGAACA 1279
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 1280 GTCTACAAGGGAAAGTGGCATGGTGATGTGGCAGTGAAAATGTTGAATGTGACAGCACCTACACCTCAGCAGTT 1353
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 1354 ACAAGCCTTCAAAAATGAAGTAGGAGTACTCAGGAAAACACGACATGTGAATATCCTACTCTTCATGGGCTATT 1427
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 1428 CCACAAAGCCACAACTGGCTATTGTTACCCAGTCGTGTGAAGGACTCCCAGCTTGTATCACCATCTCCATATCA 1501
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 1502 TTGAGACCAAATTTGAGATGATCAAACTTATAGATATTGCACGACAGACTGCACAGGGCATGGATTACTTACAC 1575
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 1576 GCCAAGTCAATCATCCACAGAGACCTCAAGAGTAATAATATATTTCTTCATGAAGACCTCACAGTAAAAATAGG 1649
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 1650 TGATTTTGGTCTAGCTACAGTGAAATCTCGATGGAGTGGGTCCCATCAGTTTGAACAGTTGTCTGGATCCATTT 1723
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 1724 TGTGGATGGCACCAGAAGTCATCAGAATGCAAGATAAAAATCCATACAGCTTTCAGTCAGATGTATATGCATTT 1797
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 1798 GGAATTGTTCTGTATGAATTGATGACTGGACAGTTACCTTATTCAAACATCAACAACAGGGACCAGATAATTTT 1871
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 1872 TATGGTGGGACGAGGATACCTGTCTCCAGATCTCAGTAAGGTACGGAGTAACTGTCCAAAAGCCATGAAGAGAT 1945
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 1946 TAATGGCAGAGTGCCTCAAAAAGAAAAGAGATGAGAGACCACTCTTTCCCCAAATTCTCGCCTCTATTGAGCTG 2019
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 2020 CTGGCCCGCTCATTGCCAAAAATTCACCGCAGTGCATCAGAACCCTCCTTGAATCGGGCTGGTTTCCAAACAGA 2093
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 2094 GGATTTTAGTCTATATGCTTGTGCTTCTCCAAAAACACCCATCCAGGCAGGGGGATATGGTGCGTTTCCTGTCC 2167
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 2168 AC 2169
Sbjct 1628 -- 1627
