Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14553
- Subject:
- XR_001785087.1
- Aligned Length:
- 2767
- Identities:
- 926
- Gaps:
- 1749
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCCATGGAAACTGTGCGGGTAGAAACGTGTGAGCGCGAGGGTGGTTGGAGGAGAAGGAACACTCCCCTGGCGAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGCGGCGCGAGGGTGCTCCTCGGATGACGTCACGCACCCAGGTGACGTCACGACCGTGACATGCGGGTGACGCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTTGCCGCGGCGACTCCTCGTCGTCTCCGCCCCCTCCCCCCCCCAAATCCCCTCAGGCTCGGCTGCGCCGGGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGCCGGCGGGTTCCAGAGGTGGCCTCCGCCCCGGCCGCTCCGCCCACGCCCCCCGCGCCTCCGCGCCCGCCTCC 296
Query 1 ---------------------------------------------------------------------ATGGC 5
|||||
Sbjct 297 GCCCGCCCTGCGCCTCCCTTCCCCCTCCCCGCCCCGCGGCGGCCGCTCGGCCCGGCTCGCGCTTCGAAGATGGC 370
Query 6 GGCGCTGA------------------------------------------------GCGGTGGCGGT------- 24
|||||||| |||||||||||
Sbjct 371 GGCGCTGAGTGGCGGCGGTGGCAGCAGCAGCGGTGGCGGCGGCGGCGGTGGCGGCGGCGGTGGCGGTGGCGACG 444
Query 25 --GGTGGCGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGACATGGAGCCCGAGGCCGGCGCCGGCGCCGGC 96
||.||||||||.||||.||||||||||||||||||.||.|||||||||||.||| ||||||||.|||
Sbjct 445 GCGGCGGCGGCGCCGAGCAGGGCCAGGCTCTGTTCAATGGCGACATGGAGCCGGAG------GCCGGCGCTGGC 512
Query 97 GCCGCGGCCTCTTCGGCTGCGGACCCTGCCATTCCGGAGGAGGTGTGGAATATCAAACAAATGATTAAGTTGAC 170
||||||||||||||||||||||||||.||||||||.||.|||||.|||||||||||.|||||||||||||||||
Sbjct 513 GCCGCGGCCTCTTCGGCTGCGGACCCGGCCATTCCTGAAGAGGTATGGAATATCAAGCAAATGATTAAGTTGAC 586
Query 171 ACAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGGGAGCATAATCCACCATCAATATATCTGGAGGCCT 244
|||||||||||||||||||||||||||||||||||||||.||||||||.||||||||||||||.||||||||||
Sbjct 587 ACAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGAGAGCATAACCCACCATCAATATACCTGGAGGCCT 660
Query 245 ATGAAGAATACACCAGCAAGCTAGATGCACTCCAACAAAGAGAACAACAGTTATTGGAATCTCTGGGGAACGGA 318
|||||||.||||||||||||||||||||.||.||.|||||||||||.|||.|.||||||||.|||||.||.|||
Sbjct 661 ATGAAGAGTACACCAGCAAGCTAGATGCCCTTCAGCAAAGAGAACAGCAGCTTTTGGAATCCCTGGGTAATGGA 734
Query 319 ACTGATTTTTCTGTTTCTAGCTCTGCATCAATGGATACCGTTACATCTTCTTCCTCTTCTAGCCTTTCAGTGCT 392
.|.||||||||||||||||||||||||||||||||.|||||||||||.||.|||||||||||||||||||||||
Sbjct 735 GCAGATTTTTCTGTTTCTAGCTCTGCATCAATGGACACCGTTACATCCTCCTCCTCTTCTAGCCTTTCAGTGCT 808
Query 393 ACCTTCATCTCTTTCAGTTTTTCAAAATCCCACAGATGTGGCACGGAGCAACCCCAAGTCACCACAAAAACCTA 466
|||.||||||||||||||||||||||.|||||||||||...||||||.||||||||||||||||||.|||||||
Sbjct 809 ACCATCATCTCTTTCAGTTTTTCAAACTCCCACAGATGCATCACGGAACAACCCCAAGTCACCACAGAAACCTA 882
Query 467 TCGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCTGCAAGGTGTGGAGTTACAGTCCGAGACAGT 540
|||||||||||||||||||||||||||||||||||||||||||.|||||.|||||.||||||||.|||||||||
Sbjct 883 TCGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCCGCAAGATGTGGTGTTACAGTTCGAGACAGT 956
Query 541 CTAAAGAAAGCACTGATGATGAGAGGTCTAATCCCAGAGTGCTGTGCTGTTTACAGAATTCATGATGGGTCT-- 612
|||||||||||||||||||||||||||||.||||||||.|||||||||||||||||||||||.|||||||.|
Sbjct 957 CTAAAGAAAGCACTGATGATGAGAGGTCTCATCCCAGAATGCTGTGCTGTTTACAGAATTCAGGATGGGTATGG 1030
Query 613 --------------------------------------------TTTCTGGAGCTGA-------CTTGAAGAA- 634
||.||||||..|| .||||||.|
Sbjct 1031 TTTAGAGAAGAAACCAATTGGCTGGGACACGGACATTTCCTGGCTTACTGGAGAGGAGTTACATGTTGAAGTAC 1104
Query 635 --AAGAGT----------------ACATCT------------CTTT----ACC--------------------- 653
.|||.| |||.|| |||| |||
Sbjct 1105 TGGAGAATGTCCCACTTACAACACACAACTTTGTACGGAAAACTTTTTTCACCTTAGCATTTTGTGACTTTTGC 1178
Query 654 ------CTGCTGT-------------TTGTCCAAGA----GTGATACATTT--------ATTTGGGAGAGAAGT 696
|||||.| |||||.||.| ||.|||.|||| .|.|.|.|.|||.||
Sbjct 1179 CGAAAGCTGCTTTTCCAGGGTTTCCGTTGTCAAACATGTGGTTATAAATTTCACCAGCGTTGTAGTACAGAGGT 1252
Query 697 TCCACTGATGTGTGTTAATTATGACCAACTTGATTTGCTGTTTGTCTCCAAGTTCTTTGAACACCACCCAATAC 770
|||||||||||||||.||||||||||||||||| ||||||||.||.||||||.|||
Sbjct 1253 TCCACTGATGTGTGTAAATTATGACCAACTTGA-------------------TTCTTTGAGCATCACCCAGTAC 1307
Query 771 CACAGGAAGAGGCGTCCTTAGCAGAGACTGCCCTAACATCTGGATCATCCCCTTCCGCACCCGCCTCGGACTCT 844
|||||||.|||||.|||||..|||||||||||||..||||||| ||||.|||||||||||.||||.||||||
Sbjct 1308 CACAGGAGGAGGCCTCCTTCCCAGAGACTGCCCTTCCATCTGG---ATCCTCTTCCGCACCCCCCTCAGACTCT 1378
Query 845 ATTGGGCCCCAAATTCTCACCAGTCCGTCTCCTTCAAAATCCATTCCAATTCCACAGCCCTTCCGACCAGCAGA 918
|.||||||||||||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 ACTGGGCCCCAAATCCTCACCAGTCCATCTCCTTCAAAATCCATTCCAATTCCACAGCCCTTCCGACCAGCAGA 1452
Query 919 TGAAGATCATCGAAATCAATTTGGGCAACGAGACCGATCCTCATCAGCTCCCAATGTGCATATAAACACAATAG 992
||||||||||||.|||||.|||||||||||||||||.|||||.||||||||||||||.||||||||||||||.|
Sbjct 1453 TGAAGATCATCGCAATCAGTTTGGGCAACGAGACCGGTCCTCCTCAGCTCCCAATGTTCATATAAACACAATTG 1526
Query 993 AACCTGTCAATATTGAT------------------------------------GACTTGATTAGAGACCAAGGA 1030
|.|||||.|||||.||| ||.||||||||||||||.||.
Sbjct 1527 AGCCTGTGAATATCGATGAAAAATTCCCAGAAGTGGAATTACAGGATCAAAGGGATTTGATTAGAGACCAGGGG 1600
Query 1031 TTTCGTGGTGATGGAGGATCAACCACAGGTTTGTCTGCTACCCCCCCTGCCTCATTACCTGGCTCACTAACTAA 1104
||||||||||||||||
Sbjct 1601 TTTCGTGGTGATGGAG---------------------------------------------------------- 1616
Query 1105 CGTGAAAGCCTTACAGAAATCTCCAGGACCTCAGCGAGAAAGGAAGTCATCTTCATCCTCAGAAGACAGGAATC 1178
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 1179 GAATGAAAACACTTGGTAGACGGGACTCGAGTGATGATTGGGAGATTCCTGATGGGCAGATTACAGTGGGACAA 1252
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 1253 AGAATTGGATCTGGATCATTTGGAACAGTCTACAAGGGAAAGTGGCATGGTGATGTGGCAGTGAAAATGTTGAA 1326
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 1327 TGTGACAGCACCTACACCTCAGCAGTTACAAGCCTTCAAAAATGAAGTAGGAGTACTCAGGAAAACACGACATG 1400
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 1401 TGAATATCCTACTCTTCATGGGCTATTCCACAAAGCCACAACTGGCTATTGTTACCCAGTCGTGTGAAGGACTC 1474
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 1475 CCAGCTTGTATCACCATCTCCATATCATTGAGACCAAATTTGAGATGATCAAACTTATAGATATTGCACGACAG 1548
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 1549 ACTGCACAGGGCATGGATTACTTACACGCCAAGTCAATCATCCACAGAGACCTCAAGAGTAATAATATATTTCT 1622
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 1623 TCATGAAGACCTCACAGTAAAAATAGGTGATTTTGGTCTAGCTACAGTGAAATCTCGATGGAGTGGGTCCCATC 1696
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 1697 AGTTTGAACAGTTGTCTGGATCCATTTTGTGGATGGCACCAGAAGTCATCAGAATGCAAGATAAAAATCCATAC 1770
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 1771 AGCTTTCAGTCAGATGTATATGCATTTGGAATTGTTCTGTATGAATTGATGACTGGACAGTTACCTTATTCAAA 1844
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 1845 CATCAACAACAGGGACCAGATAATTTTTATGGTGGGACGAGGATACCTGTCTCCAGATCTCAGTAAGGTACGGA 1918
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 1919 GTAACTGTCCAAAAGCCATGAAGAGATTAATGGCAGAGTGCCTCAAAAAGAAAAGAGATGAGAGACCACTCTTT 1992
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 1993 CCCCAAATTCTCGCCTCTATTGAGCTGCTGGCCCGCTCATTGCCAAAAATTCACCGCAGTGCATCAGAACCCTC 2066
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 2067 CTTGAATCGGGCTGGTTTCCAAACAGAGGATTTTAGTCTATATGCTTGTGCTTCTCCAAAAACACCCATCCAGG 2140
Sbjct 1617 -------------------------------------------------------------------------- 1616
Query 2141 CAGGGGGATATGGTGCGTTTCCTGTCCAC 2169
Sbjct 1617 ----------------------------- 1616
