Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_14570
• Subject: NR_132739.2
• Aligned Length: 2999
• Identities: 2190
• Gaps: 778

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATATCATCATTAGGCGTCAACACAGGAAGTGAGGATACTTCTGGCGAGCGCCGGTTGCTGTTTCTTCTCAGGCT  74

Query    1  ---------------------------------------ATGGGTGATGAAAAGGACTCTTGGAAAGTGAAAAC  35
                                                   |||||||||||||||||||||||||||||||||||
Sbjct   75  CAGGGACCGGCCGCGGCCCCGTAGGGTGTTTTAACTCAAATGGGTGATGAAAAGGACTCTTGGAAAGTGAAAAC  148

Query   36  TTTAGATGAAATTCTTCAGGAAAAGAAACGAAGGAAGGAACAAGAGGAGAAAGCAGAGATAAAACGCTTAAAAA  109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TTTAGATGAAATTCTTCAGGAAAAGAAACGAAGGAAGGAACAAGAGGAGAAAGCAGAGATAAAACGCTTAAAAA  222

Query  110  ATTCTGATGACCGGGATTCCAAGCGGGATTCCCTTGAGGAGGGGGAGCTGAGAGATCACCGCATGGAGATCACA  183
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct  223  ATTCTGATGACCGGGATTCCAAGCGGGATTCCCTTGAGGAGGGGGAGCTGAGAGATCACTGCATGGAGATCACA  296

Query  184  ATAAGGAACTCCCCGTATAGAAGAGAAGACTCTATGGAAGACAGAGGAGAAGAAGATGATTCTTTGGCCATCAA  257
            ||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ATAAGGAACTCCCCGTATAGAAGAGAAGACTCAATGGAAGACAGAGGAGAAGAAGATGATTCTTTGGCCATCAA  370

Query  258  ACCACCCCAGCAAATGTCTCGGAAAGAAAAAGCTCATCACAGAAAAGATGAAAAGAGAAAAGAGAAACGTAGGC  331
            ||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||.|||.||||||
Sbjct  371  ACCACCCCAGCAAATGTCTCGGAAAGAAAAAGTTCATCACAGAAAAGATGAAAAGAGAAAAGAAAAATGTAGGC  444

Query  332  ATCGTAGCCATTCAGCAGAAGGGGGGAAGCATGCTAGAGTGAAAGAAAAAGAAAGAGAGCACGAACGTCGGAAA  405
            |||.|||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||
Sbjct  445  ATCATAGCCATTCAGCAGAAGGGGGGAAGCATGCTAGAGTG------AAAGAAAGAGAGCACGAACGTCGGAAA  512

Query  406  CGGCATCGAGAAGAACAGGATAAAGCTCGCCGGGAATGGGAAAGACAGAAGAGAAGGGAGATGGCAAGGGAGCA  479
            ||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct  513  CGACATCGAGAAGAACAGGATAAAGCTCGCCGGGAATGGGAAAGACAGAAGAGAAGGGAAATGGCAAGGGAGCA  586

Query  480  TTCCAGGAGAGAAAGGGACCGCTTGGAGCAGTTAGAAAGGAAGCGGGAGCGGGAGCGCAAGATGCGGGAGCAGC  553
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  587  TTCCAGGAGAGAAAGGGACCGCTTGGAGCAGTTAGAAAGGAAGCGGGAGCGGGAGCGCAAGATGCGGGAGCAGC  660

Query  554  AGAAGGAGCAGCGGGAGCAGAAGGAGCGCGAGCGGCGGGCGGAGGAGCGGCGCAAGGAGCGGGAGGCCCGCAGG  627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  661  AGAAGGAGCAGCGGGAGCAGAAGGAGCGCGAGCGGCGGGCGGAGGAGCGGCGCAAGGAGCGGGAGGCCCGCAGG  734

Query  628  GAAGTGTCTGCACATCACCGAACGATGAGAGAGGACTACAGCGACAAAGTGAAAGCCAGCCACTGGAGTCGCAG  701
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  735  GAAGTGTCTGCACATCACCGAACGATGAGAGAGGACTACAGCGACAAAGTGAAAGCCAGCCACTGGAGTCGCAG  808

Query  702  CCCGCCTCGGCCGCCGCGGGAGCGGTTCGAGTTGGGAGACGGCCGGGAAGCCAGTAAAAG-AGAGAAAATGGAA  774
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct  809  CCCGCCTCGGCCGCCGCGGGAGCGGTTCGAGTTGGGAGACGGCC-GGAAGCCAGTAAAAGAAGAGAAAATGGAA  881

Query  775  GAAAGGGACCTGCTGTCCGACTTACAGGACATCAGCGACAGCGAGAGGAAGACCAGCTCGGCCGAGTCCTCGTC  848
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  882  GAAAGGGACCTGCTGTCCGACTTACAGGACATCAGCGACAGCGAGAGGAAGACCAGCTCGGCCGAGTCCTCGTC  955

Query  849  AGCAGAATCAGGCTCAGGTTCTGAGGAAGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGGAAGGGAGCACCAGTG  922
            |||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  956  AGCGGAATCAGGCTCAGGTTCTGAGGAAGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGGAAGGGAGCACCAGTG  1029

Query  923  AAGAATCAGAGGAGGAGGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGACCGGCAGCAACTCTGAGGAGGCATCA  996
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030  AAGAATCAGAGGAGGAGGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGACCGGCAGCAACTCTGAGGAGGCATCA  1103

Query  997  GAGCAGTCTGCCGAAGAAGTAAGTGAGGAAGAAATGAGTGAAGATGAAGAACGAGAAAATGAAAACCACCTCTT  1070
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104  GAGCAGTCTGCCGAAGAAGTAAGTGAGGAAGAAATGAGTGAAGATGAAGAACGAGAAAATGAAAACCACCTCTT  1177

Query 1071  GGTTGTTCCAGAGTCACGGTTCGACCGAGATTCCGGGGAGAGTGAAGAAGCAGAGGAAGAAGTGGGTGAGGGAA  1144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
Sbjct 1178  GGTTGTTCCAGAGTCACGGTTCGACCGAGATTCCGGGGAGAGTGAAGAAGCAGAGGAAGAAGTG----------  1241

Query 1145  CGCCGCAGAGCAGCGCCCTGACAGAGGGCGACTATGTGCCCGACTCCCCTGCCCTGTCGCCCATCGAGCTCAAG  1218
                                                                                      
Sbjct 1242  --------------------------------------------------------------------------  1241

Query 1219  CAGGAGCTGCCCAAGTACCTGCCGGCCCTGCAGGGCTGCCGGAGCGTCGAGGAGTTCCAGTGCCTGAACAGGAT  1292
                                            ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242  --------------------------------GGGCTGCCGGAGCGTCGAGGAGTTCCAGTGCCTGAACAGGAT  1283

Query 1293  CGAGGAGGGCACCTATGGAGTGGTCTACAGAGCAAAAGACAAGAAAACAGATGAAATTGTGGCTCTAAAGCGGC  1366
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284  CGAGGAGGGCACCTATGGAGTGGTCTACAGAGCAAAAGACAAGAAAACAGATGAAATTGTGGCTCTAAAGCGGC  1357

Query 1367  TGAAGATGGAGAAGGAGAAGGAGGGCTTCCCGATCACGTCGCTGAGGGAGATCAACACCATCCTCAAGGCCCAG  1440
            ||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 1358  TGAAGATGGAGAAGGAGAAGGAGGGCTTCCCGATCACGTCCCTGAGGGAGATCAACACCATCCTCAAGGCCCAG  1431

Query 1441  CATCCCAACATCGTCACCGTTAGAGAGATTGTGGTGGGCAGCAACATGGACAAGATCTACATCGTGATGAACTA  1514
            |||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432  CATCCCAACATTGTCACCGTTAGAGAGATTGTGGTGGGCAGCAACATGGACAAGATCTACATCGTGATGAACTA  1505

Query 1515  TGTGGAGCACGACCTCAAGAGCCTGATGGAGACCAGAAAACAGCCCCTTCCTGCCAAGGGGAGGTGAAGACCCC  1588
            .||||||||||||||||||||||||||||||||||..|||||| ||||||||||| |||||||||||||| |||
Sbjct 1506  CGTGGAGCACGACCTCAAGAGCCTGATGGAGACCATGAAACAG-CCCTTCCTGCC-AGGGGAGGTGAAGA-CCC  1576

Query 1589  TGAGAATCCAGGTTGGTGCGTGGGGGTGAAACACCTCCACGACAAACT-GATCCCTGCACCGTGACCTCAAGAC  1661
            |||..||||| |.||.|||| |||||||||||||||.|||||| |||| ||| |||||||||||||||||||||
Sbjct 1577  TGATGATCCA-GCTGCTGCG-GGGGGTGAAACACCTGCACGAC-AACTGGAT-CCTGCACCGTGACCTCAAGAC  1646

Query 1662  GTCC-ACCTGGCTGCTGAGCCACGCCGGCATCCTCAAGGTGGGTGACTTCGGGCTGGCGCGGGAGTACGGATCC  1734
            |||| |||| ||||||||||||||||||||||||||||||||||||.||.||||||||||||||||||||||||
Sbjct 1647  GTCCAACCT-GCTGCTGAGCCACGCCGGCATCCTCAAGGTGGGTGATTTTGGGCTGGCGCGGGAGTACGGATCC  1719

Query 1735  CCTCTGAAGGCCTACACCCCGGTCGTGGTGACCCTGTGGTACCGCGCCCCAGAGCTGCTGCTTGGTGCCAAGGA  1808
            ||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 1720  CCTCTGAAGGCCTACACCCCGGTCGTGGTGACCCAGTGGTACCGCGCCCCAGAGCTGCTGCTTGGTGCCAAGGA  1793

Query 1809  ATACTCCACGGCCGTGGACATGTGGTCAGTGGGTTGCATCTTCGGGGAGCTGCTGACTCAGAAGCCTCTGTTCC  1882
            |||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||
Sbjct 1794  ATACTCCACGGCCGTGGACATGTGGTCAGTGGGCTGCATCTTCGGGGAGCTGCTGACTCAGAAGCCTCTGTTCC  1867

Query 1883  CCGGGAAGTCAGAAATCGATCAGATCAACAAGGTGTTCAAGGATCTGGGGACCCCTAGTGAGAAAATCTGGCCC  1956
            |||||||.||.||||||||||||||||||||.|||||||||||.|||||||||||.||||||||||||||||||
Sbjct 1868  CCGGGAATTCGGAAATCGATCAGATCAACAAAGTGTTCAAGGAGCTGGGGACCCCCAGTGAGAAAATCTGGCCC  1941

Query 1957  GGCTACAGCGAGCTCCCAGCAGTCAAGAAGATGACCTTCAGCGAGCACCCCTACAACAACCTCCGCAAGCGCTT  2030
            ||||||||.||||||||||.||||||.|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1942  GGCTACAGTGAGCTCCCAGTAGTCAAAAAGATGACCTTCAGCGAGCACCCCTACAACAACCTCCGCAAGCGCTT  2015

Query 2031  CGGGGCTCTGCTCTCAGACCAGGGCTTCGACCTCATGAACAAGTTCCTGACCTACTTCCCCGGGAGGAGGATCA  2104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2016  CGGGGCTCTGCTCTCAGACCAGGGCTTCGACCTCATGAACAAGTTCCTGACCTACTTCCCCGGGAGGAGGATCA  2089

Query 2105  GCGCTGAGGACGGCCTCAAGCATGAGTATTTCCGCGAGACCCCCCTCCCCATCGACCCCTCCATGTTCCCCACG  2178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2090  GCGCTGAGGACGGCCTCAAGCATGAGTATTTCCGCGAGACCCCCCTCCCCATCGACCCCTCCATGTTCCCCACG  2163

Query 2179  TGGCCCGCCAAGAGCGAGCAGCAGCGTGTGAAGCGGGGCACCAGCCCGAGGCCCCCTGAGGGAGGCCTGGGCTA  2252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2164  TGGCCCGCCAAGAGCGAGCAGCAGCGTGTGAAGCGGGGCACCAGCCCGAGGCCCCCTGAGGGAGGCCTGGGCTA  2237

Query 2253  CAGCCAGCTGGGTGACGACGACCTGAAGGAGACGGGCTTCCACCTTACCACCACGAACCAGGGGGCCTCTGCCG  2326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2238  CAGCCAGCTGGGTGACGACGACCTGAAGGAGACGGGCTTCCACCTTACCACCACGAACCAGGGGGCCTCTGCCG  2311

Query 2327  CGGGCCCCGGCTTCAGCCTCAAGTTC------------------------------------------------  2352
            ||||||||||||||||||||||||||                                                
Sbjct 2312  CGGGCCCCGGCTTCAGCCTCAAGTTCTGAAGGTCAGAGTGGACCCCGTCATGGGGAGAACTCAGCCGGGACCAC  2385

Query 2353  --------------------------------------------------------------------------  2352
                                                                                      
Sbjct 2386  AGGCGTGGCTACTGCGGCTGGAGCTGCGATGAGACTCGGAACTCCTCGTCTTACTTTGTGCTCCATGTTTTGTT  2459

Query 2353  --------------------------------------------------------------------------  2352
                                                                                      
Sbjct 2460  TTTGTATTTTGGTTTGTAAATTTGTAGAATTAAATCATTTTCCTTGTTGTGGAGGAAAGAGCTGTGTTTTCTCC  2533

Query 2353  --------------------------------------------------------------------------  2352
                                                                                      
Sbjct 2534  GTGACTTGCCAGGGCATCTTCGGGTGCCCACGTGGGGCAGCACAAACCTCCACACACCCTCTCCCACTCTCGAC  2607

Query 2353  --------------------------------------------------------------------------  2352
                                                                                      
Sbjct 2608  ACGCACGGGGCTGGCTGGGCCGTGATTTGGAAAGGAACTGGTGGGAGCCGGGTGGATTGTTTAATCTTCGGAGC  2681

Query 2353  --------------------------------------------------------------------------  2352
                                                                                      
Sbjct 2682  TGGAGACCTGTTTCTGTGTTGGGATGAGCGATGCCCTCTTGCCCCAACCCACTCGTCCAGACCAGCCCTGTCCA  2755

Query 2353  --------------------------------------------------------------------------  2352
                                                                                      
Sbjct 2756  CACAGGCCCCCGGCCCCCAACCCCCAGCCCCAGCTGTGCCAGCAGACTCGACAGGTTTTTATACAAGGTTGTTG  2829

Query 2353  ---------------------------------------  2352
                                                   
Sbjct 2830  AGTTTTAAAATGTATTAAAATATTCTTCGAGGAAAGCTC  2868