Construct: ORF ccsbBroadEn_14570
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018898.1_s300c1, BRDN0000458194
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- CDK11B (984)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 984 | CDK11B | cyclin dependent kinase 11B | NM_033486.3 | 99.1% | 66.1% | (many diffs) |
| 2 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_017002925.2 | 97.9% | 65.3% | (many diffs) |
| 3 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NM_024011.4 | 97.8% | 65.2% | (many diffs) |
| 4 | human | 984 | CDK11B | cyclin dependent kinase 11B | NM_001291345.2 | 97.8% | 64.8% | (many diffs) |
| 5 | human | 984 | CDK11B | cyclin dependent kinase 11B | NM_001787.3 | 97.5% | 65% | (many diffs) |
| 6 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_017002926.2 | 96.7% | 64% | (many diffs) |
| 7 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NM_033529.4 | 96.6% | 64% | (many diffs) |
| 8 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542490.3 | 96.4% | 64.3% | (many diffs) |
| 9 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542491.2 | 96.4% | 64.3% | (many diffs) |
| 10 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542492.2 | 96.4% | 64.3% | (many diffs) |
| 11 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_006711065.4 | 96.3% | 63.7% | (many diffs) |
| 12 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NM_001313982.2 | 95.5% | 63.3% | (many diffs) |
| 13 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542493.3 | 95.2% | 63% | (many diffs) |
| 14 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NM_001313896.2 | 95.1% | 63% | (many diffs) |
| 15 | human | 984 | CDK11B | cyclin dependent kinase 11B | NM_033489.3 | 94.4% | 61.3% | (many diffs) |
| 16 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_017002928.2 | 93% | 60.3% | (many diffs) |
| 17 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542494.3 | 91.9% | 59.7% | (many diffs) |
| 18 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_017002927.2 | 91.9% | 59.7% | (many diffs) |
| 19 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_024451174.1 | 91.9% | 59.7% | (many diffs) |
| 20 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542495.3 | 90.7% | 58.4% | (many diffs) |
| 21 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NR_132739.2 | 73% | (many diffs) | |
| 22 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NR_132740.2 | 72.1% | (many diffs) | |
| 23 | human | 984 | CDK11B | cyclin dependent kinase 11B | NM_033490.3 | 71.5% | 38.3% | (many diffs) |
| 24 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_024451184.1 | 70.4% | 37.7% | (many diffs) |
| 25 | human | 984 | CDK11B | cyclin dependent kinase 11B | NM_033487.3 | 66.6% | 33.8% | (many diffs) |
| 26 | human | 984 | CDK11B | cyclin dependent kinase 11B | XR_002958171.1 | 61.4% | (many diffs) | |
| 27 | human | 984 | CDK11B | cyclin dependent kinase 11B | XR_002958173.1 | 61.4% | (many diffs) | |
| 28 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_024451190.1 | 50.2% | 14.3% | (many diffs) |
| 29 | human | 984 | CDK11B | cyclin dependent kinase 11B | XR_002958172.1 | 47.1% | (many diffs) | |
| 30 | human | 984 | CDK11B | cyclin dependent kinase 11B | XR_002958174.1 | 47.1% | (many diffs) | |
| 31 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | NM_007661.3 | 86.5% | 64% | (many diffs) |
| 32 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_011250179.2 | 86.5% | 64% | (many diffs) |
| 33 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_006538508.2 | 86.4% | 63.9% | (many diffs) |
| 34 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_017319929.1 | 86.4% | 63.9% | (many diffs) |
| 35 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | NM_001347308.1 | 81.8% | 59.3% | (many diffs) |
| 36 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_006538511.2 | 81.8% | 59.3% | (many diffs) |
| 37 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_017319930.1 | 81.8% | 59.3% | (many diffs) |
| 38 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_017319931.1 | 81.7% | 59.1% | (many diffs) |
| 39 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XR_001784083.1 | 75.6% | (many diffs) | |
| 40 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XR_001784084.1 | 74.9% | (many diffs) | |
| 41 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_006538512.3 | 61.4% | 36.4% | (many diffs) |
| 42 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_017319932.1 | 61.4% | 36.4% | (many diffs) |
| 43 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_017319933.1 | 48.3% | 22.1% | (many diffs) |
| 44 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_017319934.1 | 48.3% | 22.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 92
- ORF end:
- 1670
- ORF length:
- 1578
- Sequence:
-
1 TTTATTTTGA CTGATAGTGA CCTGTTCGTT GCAACAAATT GATGAGCAAT GCTTTTTTAT 61 AATGCCAACT TTGTACAAAA AAGTTGGCAC CATGGGTGAT GAAAAGGACT CTTGGAAAGT 121 GAAAACTTTA GATGAAATTC TTCAGGAAAA GAAACGAAGG AAGGAACAAG AGGAGAAAGC 181 AGAGATAAAA CGCTTAAAAA ATTCTGATGA CCGGGATTCC AAGCGGGATT CCCTTGAGGA 241 GGGGGAGCTG AGAGATCACC GCATGGAGAT CACAATAAGG AACTCCCCGT ATAGAAGAGA 301 AGACTCTATG GAAGACAGAG GAGAAGAAGA TGATTCTTTG GCCATCAAAC CACCCCAGCA 361 AATGTCTCGG AAAGAAAAAG CTCATCACAG AAAAGATGAA AAGAGAAAAG AGAAACGTAG 421 GCATCGTAGC CATTCAGCAG AAGGGGGGAA GCATGCTAGA GTGAAAGAAA AAGAAAGAGA 481 GCACGAACGT CGGAAACGGC ATCGAGAAGA ACAGGATAAA GCTCGCCGGG AATGGGAAAG 541 ACAGAAGAGA AGGGAGATGG CAAGGGAGCA TTCCAGGAGA GAAAGGGACC GCTTGGAGCA 601 GTTAGAAAGG AAGCGGGAGC GGGAGCGCAA GATGCGGGAG CAGCAGAAGG AGCAGCGGGA 661 GCAGAAGGAG CGCGAGCGGC GGGCGGAGGA GCGGCGCAAG GAGCGGGAGG CCCGCAGGGA 721 AGTGTCTGCA CATCACCGAA CGATGAGAGA GGACTACAGC GACAAAGTGA AAGCCAGCCA 781 CTGGAGTCGC AGCCCGCCTC GGCCGCCGCG GGAGCGGTTC GAGTTGGGAG ACGGCCGGGA 841 AGCCAGTAAA AGAGAGAAAA TGGAAGAAAG GGACCTGCTG TCCGACTTAC AGGACATCAG 901 CGACAGCGAG Aggaagacca gctcggccga gtcctcgtca gcagaatcag gctcaggttc 961 tgaggaagaa gaggaggagg aggaagagga ggaggaggaa gggagcacca gtgaagaatc 1021 agaggaggag gaggaggaag aggaagagga ggaggaggag accggcagca actctgagga 1081 ggcatcagag cagtctgccg aagaagtaag tgaggaagaa atgagtgaag atgaagaacg 1141 agaaaatgaa aaccacctct tggttgttcc agagtcacgg ttcgaccgag attccgggga 1201 gagtgaagaa gcagaggaag aagtgggtga gggaacgccg cagagcagcg ccctgacaga 1261 gggcgactat gtgcccgact cccctgccct gtcgcccatc gagctcaagc aggagctgcc 1321 caagtacctg ccggccctgc agggctgccg gagcgtcgag gagttccagt gcctgaacag 1381 gatcgaggag ggcacctatg gagtggtcta cagagcaaaa gacaagaaaa cagatgaaat 1441 tgtggctcta aagcggctga agatggagaa ggagaaggag ggcttcccga tcacgtcgct 1501 gagggagatc aacaccatcc tcaaggccca gcatcccaac atcgtcaccg ttagagagat 1561 tgtggtgggc agcaacatgg acaagatcta catcgtgatg aactatgtgg agcacgacct 1621 caagagcctg atggagaccA GAAAACAGCC CCTTCCTGCC AAGGGGAGGT GAAGACCCCT 1681 GAGAATCCAG GTTGGTGCGT GGGGGTGAAA CACCTCCACG ACAAACTGAT CCCTGCACCG 1741 TGACCTCAAG ACGTCCACCT GGCTGCTGAG CCACGCCGGC ATCCTCAAGG TGGGTGACTT 1801 CGGGCTGGCG CGGGAGTACG GATCCCCTCT GAAGGCCTAC ACCCCGGTCG TGGTGACCCT 1861 GTGGTACCGC GCCCCAGAGC TGCTGCTTGG TGCCAAGGAA TACTCCACGG CCGTGGACAT 1921 GTGGTCAGTG GGTTGCATCT TCGGGGAGCT GCTGACTCAG AAGCCTCTGT TCCCCGGGAA 1981 GTCAGAAATC GATCAGATCA ACAAGGTGTT CAAGGATCTG GGGACCCCTA GTGAGAAAAT 2041 CTGGCCCGGC TACAGCGAGC TCCCAGCAGT CAAGAAGATG ACCTTCAGCG AGCACCCCTA 2101 CAACAACCTC CGCAAGCGCT TCGGGGCTCT GCTCTCAGAC CAGGGCTTCG ACCTCATGAA 2161 CAAGTTCCTG ACCTACTTCC CCGGGAGGAG GATCAGCGCT GAGGACGGCC TCAAGCATGA 2221 GTATTTCCGC GAGACCCCCC TCCCCATCGA CCCCTCCATG TTCCCCACGT GGCCCGCCAA 2281 GAGCGAGCAG CAGCGTGTGA AGCGGGGCAC CAGCCCGAGG CCCCCTGAGG GAGGCCTGGG 2341 CTACAGCCAG CTGGGTGACG ACGACCTGAA GGAGACGGGC TTCCACCTTA CCACCACGAA 2401 CCAGGGGGCC TCTGCCGCGG GCCCCGGCTT CAGCCTCAAG TTCTTGCCAA CTTTCTTGTA 2461 CAAAGTTGGC ATTATAAGAA AGCATTGCTT ATCAATTTGT TGCAACGAAC AGGTCACTAT 2521 CAGTCAAAAT AAAATCATTA TTGCCATCCA GGCTGATTCC CCCCA