Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_14570
Subject:
XM_006538512.3
Aligned Length:
2360
Identities:
1451
Gaps:
667

Alignment

Query    1  ATGGGTGATGAAAAGGACTCTTGGAAAGTGAAAACTTTAGATGAAATTCTTCAGGAAAAGAAACGAAGGAAGGA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  ACAAGAGGAGAAAGCAGAGATAAAACGCTTAAAAAATTCTGATGACCGGGATTCCAAGCGGGATTCCCTTGAGG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  AGGGGGAGCTGAGAGATCACCGCATGGAGATCACAATAAGGAACTCCCCGTATAGAAGAGAAGACTCTATGGAA  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  GACAGAGGAGAAGAAGATGATTCTTTGGCCATCAAACCACCCCAGCAAATGTCTCGGAAAGAAAAAGCTCATCA  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  CAGAAAAGATGAAAAGAGAAAAGAGAAACGTAGGCATCGTAGCCATTCAGCAGAAGGGGGGAAGCATGCTAGAG  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  TGAAAGAAAAAGAAAGAGAGCACGAACGTCGGAAACGGCATCGAGAAGAACAGGATAAAGCTCGCCGGGAATGG  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  GAAAGACAGAAGAGAAGGGAGATGGCAAGGGAGCATTCCAGGAGAGAAAGGGACCGCTTGGAGCAGTTAGAAAG  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  GAAGCGGGAGCGGGAGCGCAAGATGCGGGAGCAGCAGAAGGAGCAGCGGGAGCAGAAGGAGCGCGAGCGGCGGG  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  CGGAGGAGCGGCGCAAGGAGCGGGAGGCCCGCAGGGAAGTGTCTGCACATCACCGAACGATGAGAGAGGACTAC  666
                                                                       |||||.|||||.|||
Sbjct    1  -----------------------------------------------------------ATGAGGGAGGAGTAC  15

Query  667  AGCGACAAAGTGAAAGCCAGCCACTGGAGTCGCAGCCCGCCTCGGCCGCCGCGGGAGCGGTTCGAGTTGGGAGA  740
            ||.||.||.|.|||.|...||||||||||.||||||||.|...||||.||..|.|||||.||.|||.|||||||
Sbjct   16  AGTGATAAGGGGAAGGTTGGCCACTGGAGCCGCAGCCCTCTGAGGCCACCAAGAGAGCGCTTTGAGATGGGAGA  89

Query  741  CGGCCGGGAAGCCAGTAAAAG-AGAGAAAATGGAAGAAAGGGACCTGCTGTCCGACTTACAGGACATCAGCGAC  813
            |..|| ||||||||||||||| ||||||..|||||||.||.|||.||.||||.|||.|.||.||||||||.|||
Sbjct   90  CAACC-GGAAGCCAGTAAAAGAAGAGAAGGTGGAAGAGAGAGACTTGTTGTCAGACCTCCAAGACATCAGTGAC  162

Query  814  AGCGAGAGGAAGACCAGCTCGGCCGAGTCCTCGTCAGCAGAATCAGGCTCAGGTTCTGAGGAAGAAGAGGAGGA  887
            |||||||||||.||||||||.||.|||||.||.||||||||||||||||||||||||||.||.||.||||||||
Sbjct  163  AGCGAGAGGAAAACCAGCTCAGCTGAGTCTTCATCAGCAGAATCAGGCTCAGGTTCTGAAGAGGAGGAGGAGGA  236

Query  888  GGAGGAAGAG---GAGGAGGAGGAAGGGAGCACCAGTGAAGAATCAGAG---GAGGAGGAGGAGGAAGAGGAAG  955
            .||.||||||   ||.||.||.|||||||||||||||||||||||||||   ||.|||||.||.||||||||.|
Sbjct  237  AGAAGAAGAGGAAGAAGAAGAAGAAGGGAGCACCAGTGAAGAATCAGAGGAAGAAGAGGAAGAAGAAGAGGAGG  310

Query  956  AGGAGGAGGAGGAGACCGGCAGCAACTCTGAGGAGGCATCAGAGCAGTCTGCCGAAGAAGTAAGTGAGGAAGAA  1029
            ||||.||.||||||||.||.|||||||||||||||||.||.||.|||||.||.||||||||.|||||.||.|||
Sbjct  311  AGGAAGAAGAGGAGACTGGGAGCAACTCTGAGGAGGCCTCTGAACAGTCCGCAGAAGAAGTCAGTGATGAGGAA  384

Query 1030  ATGAGTGAAGATGAAGAACGAGAAAATGAAAACCACCTCTTGGTTGTTCCAGAGTCACGGTTCGACCGAGATTC  1103
            |||||||||||||||||..|||||||.||.||||||.||||||||||||||||||||||.||.|||||||||||
Sbjct  385  ATGAGTGAAGATGAAGACAGAGAAAACGAGAACCACATCTTGGTTGTTCCAGAGTCACGATTTGACCGAGATTC  458

Query 1104  CGGGGAGAGTGAAGAAGCAGAGGAAGAAGTGGGTGAGGGAACGCCGCAGAGCAGCGCCCTGACAGAGGGCGACT  1177
            .|||||.||||||||||..|||||||||||.|||||.||.||.||.||||||||.||||..||.||.||.||||
Sbjct  459  TGGGGACAGTGAAGAAGGGGAGGAAGAAGTTGGTGAAGGGACTCCACAGAGCAGTGCCCCCACCGAAGGAGACT  532

Query 1178  ATGTGCCCGACTCCCCTGCCCTGTCGCCCATCGAGCTCAAGCAGGAGCTGCCCAAGTACCTGCCGGCCCTGCAG  1251
            ||||.||.|||||.||.||.|||||.||.||.|||||.||.||.||.||||||||.||||||||.|||||||||
Sbjct  533  ATGTTCCTGACTCTCCAGCACTGTCACCTATTGAGCTAAAACAAGAACTGCCCAAATACCTGCCAGCCCTGCAG  606

Query 1252  GGCTGCCGGAGCGTCGAGGAGTTCCAGTGCCTGAACAGGATCGAGGAGGGCACCTATGGAGTGGTCTACAGAGC  1325
            ||.|||.||||.||.||||||||.|||||.|||||||||||.||.||.|||||||||||.||||||||||||||
Sbjct  607  GGATGCAGGAGTGTAGAGGAGTTTCAGTGTCTGAACAGGATTGAAGAAGGCACCTATGGGGTGGTCTACAGAGC  680

Query 1326  AAAAGACAAGAAAACAGATGAAATTGTGGCTCTAAAGCGGCTGAAGATGGAGAAGGAGAAGGAGGGCTTCCCGA  1399
            |||.|||||||||||||||||||||||||||||.||||||.|.||||||||||||||||||||.||||||||.|
Sbjct  681  AAAGGACAAGAAAACAGATGAAATTGTGGCTCTGAAGCGGTTAAAGATGGAGAAGGAGAAGGAAGGCTTCCCAA  754

Query 1400  TCACGTCGCTGAGGGAGATCAACACCATCCTCAAGGCCCAGCATCCCAACATCGTCACCGTTAGAGAGATTGTG  1473
            ||||||||||||||||.||||||||||||||||||||||||||.|||||||||||||||||.||.||.|||||.
Sbjct  755  TCACGTCGCTGAGGGAAATCAACACCATCCTCAAGGCCCAGCACCCCAACATCGTCACCGTCAGGGAAATTGTT  828

Query 1474  GTGGGCAGCAACATGGACAAGATCTACATCGTGATGAACTATGTGGAGCACGACCTCAAGAGCCTGATGGAGAC  1547
            |||||.||.||||||||||||||||||||.|||||||||||.|||||.||.||||||||||||||.||||||||
Sbjct  829  GTGGGAAGTAACATGGACAAGATCTACATTGTGATGAACTACGTGGAACATGACCTCAAGAGCCTAATGGAGAC  902

Query 1548  CAGAAAACAGCCCCTTCCTGCCAAGGGGAGGTGAAGACCCCTGAGAATCCAGGTTGGTGCGTGGGGGTGAAACA  1621
            ||..||.||| ||||||||||| |||||||||||||| ||||||..||.|| |.||.||.|| |||||.||.||
Sbjct  903  CATGAAGCAG-CCCTTCCTGCC-AGGGGAGGTGAAGA-CCCTGATGATTCA-GCTGCTGAGT-GGGGTAAAGCA  971

Query 1622  CCTCCACGACAAACTGATCCCTGCACCGTGACCTCAAGACGTC-CACCTGGCTGCTGAGCCACGCCGGCATCCT  1694
            ||||||.|||||...||| |||.|||||||||||.|||||.|| .|||| .|||||||||||.||.|||||.||
Sbjct  972  CCTCCATGACAATTGGAT-CCTACACCGTGACCTGAAGACCTCTAACCT-CCTGCTGAGCCATGCTGGCATTCT  1043

Query 1695  CAAGGTGGGTGACTTCGGGCTGGCGCGGGAGTACGGATCCCCTCTGAAGGCCTACACCCCGGTCGTGGTGACCC  1768
            |||||||||.|||||.||||||||.||||||||.||.||.||.||.|||||||||||.||.||.||.||.||||
Sbjct 1044  CAAGGTGGGCGACTTTGGGCTGGCTCGGGAGTATGGTTCACCCCTAAAGGCCTACACTCCAGTTGTTGTAACCC  1117

Query 1769  TGTGGTACCGCGCCCCAGAGCTGCTGCTTGGTGCCAAGGAATACTCCACGGCCGTGGACATGTGGTCAGTGGGT  1842
            |||||||.||.||||||||.||.|||||||||||.||||||||||||||.||.||||||||||||||.||.||.
Sbjct 1118  TGTGGTATCGTGCCCCAGAACTACTGCTTGGTGCTAAGGAATACTCCACAGCTGTGGACATGTGGTCGGTAGGC  1191

Query 1843  TGCATCTTCGGGGAGCTGCTGACTCAGAAGCCTCTGTTCCCCGGGAAGTCAGAAATCGATCAGATCAACAAGGT  1916
            |||||.||.||.||.||||||||.|||||.|||||||||||.|||||||||||.||.||||||||.||||||.|
Sbjct 1192  TGCATATTTGGAGAACTGCTGACACAGAAACCTCTGTTCCCTGGGAAGTCAGATATTGATCAGATTAACAAGAT  1265

Query 1917  GTTCAAGGATCTGGGGACCCCTAGTGAGAAAATCTGGCCCGGCTACAGCGAGCTCCCAGCAGTCAAGAAGATGA  1990
            .||||||||.|||||.||.||||||||||||||||||||.|||||.|..||.||||||||.|||||||||||||
Sbjct 1266  TTTCAAGGACCTGGGTACTCCTAGTGAGAAAATCTGGCCTGGCTATAATGACCTCCCAGCCGTCAAGAAGATGA  1339

Query 1991  CCTTCAGCGAGCACCCCTACAACAACCTCCGCAAGCGCTTCGGGGCTCTGCTCTCAGACCAGGGCTTCGACCTC  2064
            |||||||||||.|.|||||.|||||||||||||||.|.||.||||||.||.|.|||||.||.|||||.||.|||
Sbjct 1340  CCTTCAGCGAGTATCCCTATAACAACCTCCGCAAGAGATTTGGGGCTTTGTTATCAGATCAAGGCTTTGATCTC  1413

Query 2065  ATGAACAAGTTCCTGACCTACTTCCCCGGGAGGAGGATCAGCGCTGAGGACGGCCTCAAGCATGAGTATTTCCG  2138
            |||||||||||||||||.||||.|||.||.||||||||||.|||.||.||.|||||||||||.||.||||||||
Sbjct 1414  ATGAACAAGTTCCTGACATACTACCCTGGCAGGAGGATCAACGCAGAAGATGGCCTCAAGCACGAATATTTCCG  1487

Query 2139  CGAGACCCCCCTCCCCATCGACCCCTCCATGTTCCCCACGTGGCCCGCCAAGAGCGAGCAGCAGCGTGTGAAGC  2212
            .|||||.|||||||||||||||||.||||||||||||||||||||.||||||||.|||||||||.|.|||||||
Sbjct 1488  AGAGACTCCCCTCCCCATCGACCCATCCATGTTCCCCACGTGGCCTGCCAAGAGTGAGCAGCAGAGAGTGAAGC  1561

Query 2213  GGGGCACCAGCCCGAGGCCCCCTGAGGGAGGCCTGGGCTACAGCCAGCTGGGTGACGACGACCTGAAGGAGACG  2286
            |.|||||.||.||..||||.||||||||.||||||||||||||||||||||||||.||.|||||||||||||||
Sbjct 1562  GAGGCACGAGTCCACGGCCTCCTGAGGGCGGCCTGGGCTACAGCCAGCTGGGTGATGATGACCTGAAGGAGACG  1635

Query 2287  GGCTTCCACCTTACCACCACGAACCAGGGGGCCTCTGCCGCGGGCCCCGGCTTCAGCCTCAAGTTC  2352
            |||||||||||.||||||||.||||||||.|||||.||.||.|||||.||||||||||||||||||
Sbjct 1636  GGCTTCCACCTCACCACCACCAACCAGGGAGCCTCAGCTGCAGGCCCTGGCTTCAGCCTCAAGTTC  1701

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