Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_14570
• Subject: XR_001784083.1
• Aligned Length: 2523
• Identities: 1908
• Gaps: 332

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTGCGAGGCACTGAAATGACCTGGATGGTCTTTCATCCTAGAACAGTACCGTTACGTGGATGATGATGGTTGCG  74

Query    1  --------------------------------ATGGGTGATGAAAAGGACTCTTGGAAAGTGAAAACTTTAGAT  42
                                            |||||||||||||||||||||||||||||||||||.||||||
Sbjct   75  TTTTACGGAAAACACTGAGTGTTTTAACTCAAATGGGTGATGAAAAGGACTCTTGGAAAGTGAAAACGTTAGAT  148

Query   43  GAAATTCTTCAGGAAAAGAAACGAAGGAAGGAACAAGAGGAGAAAGCAGAGATAAAACGCTTAAAAAATTCTGA  116
            ||||||||.||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GAAATTCTCCAGGAAAAGAAACGAAGGAAAGAACAAGAGGAGAAAGCAGAGATAAAACGCTTAAAAAATTCTGA  222

Query  117  TGACCGGGATTCCAAGCGGGATTCCCTTGAGGAGGGGGAGCTGAGAGATCACCGCATGGAGATCACAATAAGGA  190
            ||||||.||||||||..|||||||||||||||||||||||||||||||||||||.||||||||||||||.||||
Sbjct  223  TGACCGCGATTCCAAAAGGGATTCCCTTGAGGAGGGGGAGCTGAGAGATCACCGAATGGAGATCACAATCAGGA  296

Query  191  ACTCCCCGTATAGAAGAGAAGACTCTATGGAAGACAGAGGAGAAGAAGATGATTCTTTGGCCATCAAACCACCC  264
            ||||.||.|||||||||||.||.||||||||||||||||||||.||.|||||||||.|||||||||||||||||
Sbjct  297  ACTCACCATATAGAAGAGAGGATTCTATGGAAGACAGAGGAGAGGAGGATGATTCTCTGGCCATCAAACCACCC  370

Query  265  CAGCAAATGTCTCGGAAAGAAAAAGCTCATCACAGAAAAGATGAAAAGAGAAAAGAGAAACGTAGGCATCGTAG  338
            |||||||||||||||||||||||.|||||||||||||||||.||.||.|||||||||||||||.|.||||||||
Sbjct  371  CAGCAAATGTCTCGGAAAGAAAAGGCTCATCACAGAAAAGACGAGAAAAGAAAAGAGAAACGTCGACATCGTAG  444

Query  339  CCATTCAGCAGAAGGGGGGAAGCATGCTAGAGTGAAAGAAAAAGAAAGAGAGCACGAACGTCGGAAACGGCATC  412
            ||||||||||||.||.|||||.|||||.|||||||||||.||||||||.|||||||||||.||||||||.||.|
Sbjct  445  CCATTCAGCAGAGGGAGGGAAACATGCCAGAGTGAAAGAGAAAGAAAGGGAGCACGAACGCCGGAAACGCCACC  518

Query  413  GAGAAGAACAGGATAAAGCTCGCCGGGAATGGGAAAGACAGAAGAGAAGGGAGATGGCAAGGGAGCATTCCAGG  486
            ||||||||||.|||||||||||..||||.|||||||||||||||||.|||||.|||||.||.||.||||||||.
Sbjct  519  GAGAAGAACAAGATAAAGCTCGAAGGGAGTGGGAAAGACAGAAGAGGAGGGAAATGGCGAGAGAACATTCCAGA  592

Query  487  AGAGAAAGGGACCGCTTGGAGCAGTTAGAAAGGAAGCGGGAGCGGGAGCGCAAGATGCGGGAGCAGCAGAAGGA  560
            |||||.|||||||||.||||||||||||||||||||.|||||||||||||||||.||.||||||||||||||||
Sbjct  593  AGAGAGAGGGACCGCCTGGAGCAGTTAGAAAGGAAGAGGGAGCGGGAGCGCAAGCTGAGGGAGCAGCAGAAGGA  666

Query  561  GCAGCGGGAGCAGAAGGAGCGCGAGCGGCGGGCGGAGGAGCGGCGCAAGGAGCGGGAGGCCCGCAGGGAAGTGT  634
            |||||||||||||||||||||.||.|||.||||.||||||||.|||||.|||.|.||.||.||.||||||||.|
Sbjct  667  GCAGCGGGAGCAGAAGGAGCGGGAACGGAGGGCAGAGGAGCGCCGCAAAGAGAGAGAAGCGCGTAGGGAAGTCT  740

Query  635  CTGCACATCACCGAACGATGAGAGAGGACTACAGCGACAAAGTGAAAGCCAGCCACTGGAGTCGCAGCCCGCCT  708
            |||||||||||||.||.|||||.|||||.|||||.||.||.|.|||.|...||||||||||.||||||||.|..
Sbjct  741  CTGCACATCACCGTACCATGAGGGAGGAGTACAGTGATAAGGGGAAGGTTGGCCACTGGAGCCGCAGCCCTCTG  814

Query  709  CGGCCGCCGCGGGAGCGGTTCGAGTTGGGAGACGGCCGGGAAGCCAGTAAAAG-AGAGAAAATGGAAGAAAGGG  781
            .||||.||..|.|||||.||.|||.||||||||..|| ||||||||||||||| ||||||..|||||||.||.|
Sbjct  815  AGGCCACCAAGAGAGCGCTTTGAGATGGGAGACAACC-GGAAGCCAGTAAAAGAAGAGAAGGTGGAAGAGAGAG  887

Query  782  ACCTGCTGTCCGACTTACAGGACATCAGCGACAGCGAGAGGAAGACCAGCTCGGCCGAGTCCTCGTCAGCAGAA  855
            ||.||.||||.|||.|.||.||||||||.||||||||||||||.||||||||.||.|||||.||.|||||||||
Sbjct  888  ACTTGTTGTCAGACCTCCAAGACATCAGTGACAGCGAGAGGAAAACCAGCTCAGCTGAGTCTTCATCAGCAGAA  961

Query  856  TCAGGCTCAGGTTCTGAGGAAGAAGAGGAGGAGGAGGAAGAG---GAGGAGGAGGAAGGGAGCACCAGTGAAGA  926
            |||||||||||||||||.||.||.||||||||.||.||||||   ||.||.||.||||||||||||||||||||
Sbjct  962  TCAGGCTCAGGTTCTGAAGAGGAGGAGGAGGAAGAAGAAGAGGAAGAAGAAGAAGAAGGGAGCACCAGTGAAGA  1035

Query  927  ATCAGAG---GAGGAGGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGACCGGCAGCAACTCTGAGGAGGCATCAG  997
            |||||||   ||.|||||.||.||||||||.|||||.||.||||||||.||.|||||||||||||||||.||.|
Sbjct 1036  ATCAGAGGAAGAAGAGGAAGAAGAAGAGGAGGAGGAAGAAGAGGAGACTGGGAGCAACTCTGAGGAGGCCTCTG  1109

Query  998  AGCAGTCTGCCGAAGAAGTAAGTGAGGAAGAAATGAGTGAAGATGAAGAACGAGAAAATGAAAACCACCTCTTG  1071
            |.|||||.||.||||||||.|||||.||.||||||||||||||||||||..|||||||.||.||||||.|||||
Sbjct 1110  AACAGTCCGCAGAAGAAGTCAGTGATGAGGAAATGAGTGAAGATGAAGACAGAGAAAACGAGAACCACATCTTG  1183

Query 1072  GTTGTTCCAGAGTCACGGTTCGACCGAGATTCCGGGGAGAGTGAAGAAGCAGAGGAAGAAGTGGGTGAGGGAAC  1145
            |||||||||||||||||.||.|||||||||||.|||||.||||||||||..|||||||||||.|||||.||.||
Sbjct 1184  GTTGTTCCAGAGTCACGATTTGACCGAGATTCTGGGGACAGTGAAGAAGGGGAGGAAGAAGTTGGTGAAGGGAC  1257

Query 1146  GCCGCAGAGCAGCGCCCTGACAGAGGGCGACTATGTGCCCGACTCCCCTGCCCTGTCGCCCATCGAGCTCAAGC  1219
            .||.||||||||.||||..||.||.||.||||||||.||.|||||.||.||.|||||.||.||.|||||.||.|
Sbjct 1258  TCCACAGAGCAGTGCCCCCACCGAAGGAGACTATGTTCCTGACTCTCCAGCACTGTCACCTATTGAGCTAAAAC  1331

Query 1220  AGGAGCTGCCCAAGTACCTGCCGGCCCTGCAGGGCTGCCGGAGCGTCGAGGAGTTCCAGTGCCTGAACAGGATC  1293
            |.||.||||||||.||||||||.|||||||||||.|||.||||.||.||||||||.|||||.|||||||||||.
Sbjct 1332  AAGAACTGCCCAAATACCTGCCAGCCCTGCAGGGATGCAGGAGTGTAGAGGAGTTTCAGTGTCTGAACAGGATT  1405

Query 1294  GAGGAGGGCACCTATGGAGTGGTCTACAGAGCAAAAGACAAGAAAACAGATGAAATTGTGGCTCTAAAGCGGCT  1367
            ||.||.|||||||||||.|||||||||||||||||.|||||||||||||||||||||||||||||.||||||.|
Sbjct 1406  GAAGAAGGCACCTATGGGGTGGTCTACAGAGCAAAGGACAAGAAAACAGATGAAATTGTGGCTCTGAAGCGGTT  1479

Query 1368  GAAGATGGAGAAGGAGAAGGAGGGCTTCCCGATCACGTCGCTGAGGGAGATCAACACCATCCTCAAGGCCCAGC  1441
            .||||||||||||||||||||.||||||||.|||||||||||||||||.|||||||||||||||||||||||||
Sbjct 1480  AAAGATGGAGAAGGAGAAGGAAGGCTTCCCAATCACGTCGCTGAGGGAAATCAACACCATCCTCAAGGCCCAGC  1553

Query 1442  ATCCCAACATCGTCACCGTTAGAGAGATTGTGGTGGGCAGCAACATGGACAAGATCTACATCGTGATGAACTAT  1515
            |.|||||||||||||||||.||.||.|||||.|||||.||.||||||||||||||||||||.|||||||||||.
Sbjct 1554  ACCCCAACATCGTCACCGTCAGGGAAATTGTTGTGGGAAGTAACATGGACAAGATCTACATTGTGATGAACTAC  1627

Query 1516  GTGGAGCACGACCTCAAGAGCCTGATGGAGACCAGAAAACAGCCCCTTCCTGCCA-------------------  1570
            |||||.||.||||||||||||||.||||||||||..||.||| ||||||||||||                   
Sbjct 1628  GTGGAACATGACCTCAAGAGCCTAATGGAGACCATGAAGCAG-CCCTTCCTGCCAGAGATATTAGGAATTCGTA  1700

Query 1571  --------------------------------------AGGGGAGGTGAAGACCCCTGAGAATCCAGGTTGGTG  1606
                                                  |||||||||||||| ||||||..||.|| |.||.||
Sbjct 1701  GAGCAAACAGAGCATCTGTGTGATCTCGTCACTTTCGCAGGGGAGGTGAAGA-CCCTGATGATTCA-GCTGCTG  1772

Query 1607  CGTGGGGGTGAAACACCTCCACGACAAACTGATCCCTGCACCGTGACCTCAAGACGTC-CACCTGGCTGCTGAG  1679
            .|| |||||.||.||||||||.|||||...||| |||.|||||||||||.|||||.|| .|||| .||||||||
Sbjct 1773  AGT-GGGGTAAAGCACCTCCATGACAATTGGAT-CCTACACCGTGACCTGAAGACCTCTAACCT-CCTGCTGAG  1843

Query 1680  CCACGCCGGCATCCTCAAGGTGGGTGACTTCGGGCTGGCGCGGGAGTACGGATCCCCTCTGAAGGCCTACACCC  1753
            |||.||.|||||.|||||||||||.|||||.||||||||.||||||||.||.||.||.||.|||||||||||.|
Sbjct 1844  CCATGCTGGCATTCTCAAGGTGGGCGACTTTGGGCTGGCTCGGGAGTATGGTTCACCCCTAAAGGCCTACACTC  1917

Query 1754  CGGTCGTGGTGACCCTGTGGTACCGCGCCCCAGAGCTGCTGCTTGGTGCCAAGGAATACTCCACGGCCGTGGAC  1827
            |.||.||.||.|||||||||||.||.||||||||.||.|||||||||||.||||||||||||||.||.||||||
Sbjct 1918  CAGTTGTTGTAACCCTGTGGTATCGTGCCCCAGAACTACTGCTTGGTGCTAAGGAATACTCCACAGCTGTGGAC  1991

Query 1828  ATGTGGTCAGTGGGTTGCATCTTCGGGGAGCTGCTGACTCAGAAGCCTCTGTTCCCCGGGAAGTCAGAAATCGA  1901
            ||||||||.||.||.|||||.||.||.||.||||||||.|||||.|||||||||||.|||||||||||.||.||
Sbjct 1992  ATGTGGTCGGTAGGCTGCATATTTGGAGAACTGCTGACACAGAAACCTCTGTTCCCTGGGAAGTCAGATATTGA  2065

Query 1902  TCAGATCAACAAGGTGTTCAAGGATCTGGGGACCCCTAGTGAGAAAATCTGGCCCGGCTACAGCGAGCTCCCAG  1975
            ||||||.||||||.|.||||||||.|||||.||.||||||||||||||||||||.|||||.|..||.|||||||
Sbjct 2066  TCAGATTAACAAGATTTTCAAGGACCTGGGTACTCCTAGTGAGAAAATCTGGCCTGGCTATAATGACCTCCCAG  2139

Query 1976  CAGTCAAGAAGATGACCTTCAGCGAGCACCCCTACAACAACCTCCGCAAGCGCTTCGGGGCTCTGCTCTCAGAC  2049
            |.||||||||||||||||||||||||.|.|||||.|||||||||||||||.|.||.||||||.||.|.|||||.
Sbjct 2140  CCGTCAAGAAGATGACCTTCAGCGAGTATCCCTATAACAACCTCCGCAAGAGATTTGGGGCTTTGTTATCAGAT  2213

Query 2050  CAGGGCTTCGACCTCATGAACAAGTTCCTGACCTACTTCCCCGGGAGGAGGATCAGCGCTGAGGACGGCCTCAA  2123
            ||.|||||.||.||||||||||||||||||||.||||.|||.||.||||||||||.|||.||.||.||||||||
Sbjct 2214  CAAGGCTTTGATCTCATGAACAAGTTCCTGACATACTACCCTGGCAGGAGGATCAACGCAGAAGATGGCCTCAA  2287

Query 2124  GCATGAGTATTTCCGCGAGACCCCCCTCCCCATCGACCCCTCCATGTTCCCCACGTGGCCCGCCAAGAGCGAGC  2197
            |||.||.||||||||.|||||.|||||||||||||||||.||||||||||||||||||||.||||||||.||||
Sbjct 2288  GCACGAATATTTCCGAGAGACTCCCCTCCCCATCGACCCATCCATGTTCCCCACGTGGCCTGCCAAGAGTGAGC  2361

Query 2198  AGCAGCGTGTGAAGCGGGGCACCAGCCCGAGGCCCCCTGAGGGAGGCCTGGGCTACAGCCAGCTGGGTGACGAC  2271
            |                                                                         
Sbjct 2362  A-------------------------------------------------------------------------  2362

Query 2272  GACCTGAAGGAGACGGGCTTCCACCTTACCACCACGAACCAGGGGGCCTCTGCCGCGGGCCCCGGCTTCAGCCT  2345
                                                                                      
Sbjct 2363  --------------------------------------------------------------------------  2362

Query 2346  CAAGTTC  2352
                   
Sbjct 2363  -------  2362