Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14615
- Subject:
- XR_001781790.1
- Aligned Length:
- 3298
- Identities:
- 1872
- Gaps:
- 1222
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCGCGCGGCAGGCCAGCTCCAGGGCCGCCATCTTGGCGGAAAGTTTAGGGGGAGAGCGACTGGGGGCGCGGAAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GAGGCGAGGTTCCGGGGGTGGGGCGGCCCGGAGGCGAGCGGACGAGCAGGGGCCGCGGGCCGCGGCGAGCGGGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GAGCGGCGGCGGCCGAGGCGGAGAGAGCGGCGCGGGGGTGCGGCCGCCGAAGGGGGAGCTCCTCCCCCGTCCCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCACCCCCTCAGCTGAGCTCGGGGCGGGGCGGGGTACGTGGAGCGGGGCCGGGCGGGGAAGCTGCTCCGAGTCC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGCCGGAGCGCACCCGGGGCGCCCGCGTACGCCGCTCGCGGGAACTTTGCGGCGGAGCCGCAGGTGTGGAGGCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCGGAGGGGGGTGCATGAGCGGCGCGGAGAGCGGCGGCTGTCCGGTCCGGCCCCTGCTGGAGTCGCCGCCGGGA 444
Query 1 ---------------------------------------------------ATGCCGGTCCGGAAGCAAGATAC 23
|||||||||||||||||||||||
Sbjct 445 GGAGACGAACGAGGAACCAGGTGTGTGCCGCCTTCCTGATTCTGGAGAAAAATGCCGGTCCGGAAGCAAGATAC 518
Query 24 CCAGAGAGCATTGCACCTTTTGGAGGAATATCGTTCAAAACTAAGCCAAACTGAAGACAGACAGCTCAGAAGTT 97
|||||||||||||||.||.|||||.||||||||.||.||||||||||||||||||||||||||.||||||||||
Sbjct 519 CCAGAGAGCATTGCATCTGTTGGAAGAATATCGATCGAAACTAAGCCAAACTGAAGACAGACAACTCAGAAGTT 592
Query 98 CCATAGAACGGGTTATTAACATATTTCAGAGCAACCTCTTTCAGGCTTTAATAGATATTCAAGAATTTTATGAA 171
|||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CCATAGAGCGGGTTATTAACATATTTCAGAGCAACCTCTTTCAGGCTTTAATAGATATTCAAGAATTTTATGAA 666
Query 172 GTGACCTTACTGGATAATCCAAAATGTATAGATCGTTCAAAGCCGTCTGAACCAATTCAACCTGTGAATACTTG 245
|||||||||||.|||||||||||||||.|.||||.||||||||.||.|||||||.||||.|||||||.||||||
Sbjct 667 GTGACCTTACTTGATAATCCAAAATGTGTGGATCATTCAAAGCAGTGTGAACCAGTTCAGCCTGTGACTACTTG 740
Query 246 GGAGATTTCCAGCCTTCCAAGCTCTACTGTGACTTCAGAGACACTGCCAAGCAGCCTTAGCCCTAGTGTAGAGA 319
|||||||.||||||||||||||.||.|.|||||.|||||.||.|||||..||||||||||||||...|||||||
Sbjct 741 GGAGATTGCCAGCCTTCCAAGCACTGCCGTGACGTCAGAAACCCTGCCCGGCAGCCTTAGCCCTCCAGTAGAGA 814
Query 320 AATACAGGTATCAGGATGAAGATACACCTCCTCAAGAGCATATTTCCCCACAAATCACAAATGAAGTGATAGGT 393
|||||.||||||||||||||||...||.|||||..|||||||||||.||||||.||||||||||.|||.|||||
Sbjct 815 AATACCGGTATCAGGATGAAGAGGTACTTCCTCCTGAGCATATTTCTCCACAAGTCACAAATGAGGTGCTAGGT 888
Query 394 CCAGAATTGGTTCATGTCTCAGAGAAGAACTTATCAGAGATTGAGAATGTCCATGGATTTGTTTCTCATTCTCA 467
||||||.||||.||||||||||||||||||.|.|||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CCAGAACTGGTCCATGTCTCAGAGAAGAACCTGTCAGAGATTGAGAATGTCCATGGATTTGTTTCTCATTCTCA 962
Query 468 TATTTCACCAATAA------------------------------------------------------------ 481
|||.||||||||||
Sbjct 963 TATCTCACCAATAAAGCCCACAGAAGCTGTTCCTCCCTCCTCTCCCATTGTCCCTGTGACCCCTGCCCTGCCAG 1036
Query 482 ---------------------------------------AGGCAAATCCTCCCCCAGTACTGGTCAACACAGAT 516
|||||||||||||.|||||.||||||||||||||.
Sbjct 1037 TCCCTGCTGAGAGTACTGTCGTCCTGCCCTCCGCACCACAGGCAAATCCTCCTCCAGTGCTGGTCAACACAGAC 1110
Query 517 AGCTTGAAAACACCAACTTACGTTAATGGCACAGATGCAGATTATGAATATGAAGAAATCACACTTGAAAGGGG 590
|||||..|.|||||||||||.|||||||||||.||||||||||||||||||||.||||||||||||||||||||
Sbjct 1111 AGCTTAGAGACACCAACTTATGTTAATGGCACTGATGCAGATTATGAATATGAGGAAATCACACTTGAAAGGGG 1184
Query 591 AAATTCAGGGCTTGGTTTCAGCATTGCAG--AGTACGGACAACCCACACATTGGAGATGACTCAAGTATTTTCA 662
||||||.||.||||||||||||||||||| .||||.|||||||||||||||||||||||||||||||||||||
Sbjct 1185 AAATTCGGGTCTTGGTTTCAGCATTGCAGGAGGTACAGACAACCCACACATTGGAGATGACTCAAGTATTTTCA 1258
Query 663 TTACCAAAATTATCACAGG-GGAGCAGCCGCCCAAGATGGGAAGATTGCGGGTCAATGACTGTATATTACAAGT 735
|.||||||||||||||||| |||||.||.|||||.||| ||||||||||||||.||||||||||||.|...|||
Sbjct 1259 TCACCAAAATTATCACAGGCGGAGCGGCTGCCCAGGAT-GGAAGATTGCGGGTAAATGACTGTATACTGAGAGT 1331
Query 736 AAATGAAGTAGATGTTCGTGATGTAACACATAGCAAAGCAGTTGAAGCGTTGAAAGAAGCAGGGTCTATTGTAC 809
||||||||.|||.||||||||||||||.||.|||||||||||.||.||.||.||||||||.||.||||||||.|
Sbjct 1332 AAATGAAGCAGACGTTCGTGATGTAACCCACAGCAAAGCAGTGGAGGCATTAAAAGAAGCTGGATCTATTGTGC 1405
Query 810 GCTTGTATGTAAAAAGAAGGAAACCAGTGTCAGAAAAAATAATGGAAATAAAGCTCATTAAAGGTCCTAAAGGT 883
|.||||||||.|||||..||||.||||..|||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 1406 GATTGTATGTGAAAAGGCGGAAGCCAGCATCAGAAAAAATCATGGAAATAAAGCTCATTAAAGGTCCTAAAGGT 1479
Query 884 CTTGGGTTTAGCATTGCTGGAGGTGTTGGAAATCAGCATATTCCTGGGGATAATAGCATCTATGTAACCAAAAT 957
||||||||.|||||||||||||||||||||||||||||.||||||||.|||||.||||||||||||||||||||
Sbjct 1480 CTTGGGTTCAGCATTGCTGGAGGTGTTGGAAATCAGCACATTCCTGGTGATAACAGCATCTATGTAACCAAAAT 1553
Query 958 AATTGAAGGAGGTGCAGCACATAAGGATGGCAAACTTCAGATTGGAGATAAACTTTTAGCAGTGAATAACGTAT 1031
|||||||||||||||||||||.|||||||||||.|||||||||||||||||.|||.||||||||||.|..||.|
Sbjct 1554 AATTGAAGGAGGTGCAGCACACAAGGATGGCAAGCTTCAGATTGGAGATAAGCTTCTAGCAGTGAACAGTGTGT 1627
Query 1032 GTTTAGAAGAAGTTACTCATGAAGAAGCAGTAACTGCCTTAAAGAACACATCTGATTTTGTTTATTTGAAAGTG 1105
|||||||||||||||||||||||||||||||.||||||||||||||.|||||||||||||||||||||||||||
Sbjct 1628 GTTTAGAAGAAGTTACTCATGAAGAAGCAGTGACTGCCTTAAAGAATACATCTGATTTTGTTTATTTGAAAGTG 1701
Query 1106 GCAAAACCCACAAGTATGTATATGAATGATGGCTATGCACCACCTGATATCACCAACTCTTCTTCTCAGCCTGT 1179
||||||||.||||||||||||||.|||||||||||||||||||||||.|||||.||.|||||||||||..||||
Sbjct 1702 GCAAAACCAACAAGTATGTATATAAATGATGGCTATGCACCACCTGACATCACTAATTCTTCTTCTCAATCTGT 1775
Query 1180 TGATAACCATGTTAGCCCATCTTCCTTCTTGGGCCAGACACCAGCATCTCCAGCCAGATACTC-CCCAGTTTCT 1252
|||.||||||||.|||||.||.||||.||||||||||||.|||.|.||.||||||||.||||| |||| |||||
Sbjct 1776 TGACAACCATGTCAGCCCGTCCTCCTGCTTGGGCCAGACGCCAACGTCACCAGCCAGGTACTCACCCA-TTTCT 1848
Query 1253 AAAGCAGTACTTGGAGATGATGAAATTACAAGGGAACCTAGAAAAGTTGTTCTTCATCGTGGCTCAACGGGCCT 1326
|||||.||.||.||||||||.||.||.||.||||||||||||||||||||||||||||||||||||||.||.||
Sbjct 1849 AAAGCTGTGCTCGGAGATGACGAGATCACTAGGGAACCTAGAAAAGTTGTTCTTCATCGTGGCTCAACAGGACT 1922
Query 1327 TGGTTTCAACATTGTAGGAGGAGAAGATGGAGAAGGAATATTTATTTCCTTTATCTTAGCCGGAGGACCTGCTG 1400
||||||.||||||||.|||||.||||||||||||||.||.|||||.|||||.|||.|.||.||.||||||||||
Sbjct 1923 TGGTTTTAACATTGTGGGAGGTGAAGATGGAGAAGGGATTTTTATCTCCTTCATCCTTGCTGGCGGACCTGCTG 1996
Query 1401 ATCTAAGTGGAGAGCTCAGAAAAGGAGATCGTATTATATCGGTAAACAGTGTTGACCTCAGAGCTGCTAGTCAT 1474
|||||||||||||||||||||||||||||||.||.||||||||.|||||||||||||||||||||||.|||||.
Sbjct 1997 ATCTAAGTGGAGAGCTCAGAAAAGGAGATCGCATCATATCGGTGAACAGTGTTGACCTCAGAGCTGCAAGTCAC 2070
Query 1475 GAGCAGGCAGCAGCTGCATTGAAAAATGCTGGCCAGGCTGTCACAATTGTTGCACAATATCGACCTGAAGAATA 1548
||.||.||||||||||||.|.||.||.||.|||||.||.|||||.||.|||||.|||||||||||.|||||.||
Sbjct 2071 GAACAAGCAGCAGCTGCACTAAAGAACGCAGGCCAAGCCGTCACCATCGTTGCGCAATATCGACCCGAAGAGTA 2144
Query 1549 CAGTCGTTTTGAAGCTAAAATACATGATTTACGGGAGCAGATGATGAATAGTAGTATTAGTTCAGGGTCAGGTT 1622
|||||||||||||||||||||.|||||.|||||||||||||||||||||||.|||.|.||||||||||||||.|
Sbjct 2145 CAGTCGTTTTGAAGCTAAAATCCATGACTTACGGGAGCAGATGATGAATAGCAGTGTCAGTTCAGGGTCAGGGT 2218
Query 1623 CTCTTCGAACTAGCCAGAAGCGATCCCTCTATGTCAGAGCCCTTTTTGATTATGACAAGACTAAAGACAGTGGG 1696
||||||||||.|||||||||||.||||||||||||||||||||.||||||||||||||||||||.|||||.|||
Sbjct 2219 CTCTTCGAACCAGCCAGAAGCGCTCCCTCTATGTCAGAGCCCTCTTTGATTATGACAAGACTAAGGACAGCGGG 2292
Query 1697 CTTCCCAGTCAGGGACTGAACTTCAAATTTGGAGATATCCTCCATGTTATTAATGCTTCTGATGATGAATGGTG 1770
|||||||||||.||||||||||||...||||||||.|||||||||||.||.|||||||||||.||.||.|||||
Sbjct 2293 CTTCCCAGTCAAGGACTGAACTTCCGCTTTGGAGACATCCTCCATGTCATCAATGCTTCTGACGACGAGTGGTG 2366
Query 1771 GCAAGCCAGGCAGGTTACACCAGATGGTGAGAGCGATGAGGTCGGAGTGATTCCCAGTAAACGCAGAGTTGAGA 1844
|||||||||||||||.||.|||||.||.|||||.||.||.||||||||||||||.||||||||.||||||||||
Sbjct 2367 GCAAGCCAGGCAGGTCACCCCAGACGGGGAGAGTGACGAAGTCGGAGTGATTCCTAGTAAACGAAGAGTTGAGA 2440
Query 1845 AGAAAGAACGAGCCCGATTAAAAACAGTGAAATTCAATTCTAAAACGA---GAGATAAAGGGCAGTCATTCAAT 1915
||||.||||||||||||||||||||.||.|||||||||||||||||.| |||||||||||||||||||||||
Sbjct 2441 AGAAGGAACGAGCCCGATTAAAAACGGTCAAATTCAATTCTAAAACAAGAGGAGATAAAGGGCAGTCATTCAAT 2514
Query 1916 GACAAGCGTAAAAAGAACCTCTTTTCCCGAAAATTCCCCTTCTACAAGAACAAGGACCAGAGTGAGCAGGAAAC 1989
|||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||.||||||||
Sbjct 2515 GACAAGCGTAAAAAGAACCTCTTTTCCCGAAAATTTCCCTTCTACAAGAACAAGGACCAGAGTGAACAGGAAAC 2588
Query 1990 AAGTGATGCTCACAAGTATGTATATGAATGATGGCTATGCACCACCTGATATCACCAAC-TGTGGTCAA----- 2057
.|||||||||.|| .|| ||| .||||| |.|| ||.|.||||
Sbjct 2589 GAGTGATGCTGAC-----------CGA--GAT-----------CCCTGA------CGACATGGGATCAAAAGGC 2632
Query 2058 --GAAGAATACGT--CTTATCTTATGAACC------AGTGAATCAACAAGAAGTTAATTATACTCGACCAGTGA 2121
|||| .|||| || |||.||| || ||||| |||.||||| |.|||.
Sbjct 2633 CTGAAG--CACGTAACT--TCTAATG--CCAGCGATAGTGA------AAGTAGTTA------------CCGTGG 2682
Query 2122 TCATATTGGGACCTATGAAAGACAGGATAAATGATGACTTGATCTCAGAATTTCCTGACAAATTTGGATCCTGT 2195
|| |||| ||.||
Sbjct 2683 TC----------------AAGA-AGAAT---------------------------------------------- 2693
Query 2196 GTTCCTCATACAACTAGACCAAAACGAGATTATGAGGTAGATGGAAGAGATTATCATTTTGTGACTTCAAGAGA 2269
Sbjct 2694 -------------------------------------------------------------------------- 2693
Query 2270 GCAGATGGAAAAAGATATCCAGGAACATAAATTCATTGAAGCTGGCCAGTATAACAATCATCTATATGGAACAA 2343
Sbjct 2694 -------------------------------------------------------------------------- 2693
Query 2344 GTGTTCAGTCTGTACGAGAAGTAGCAGAAAAGGGCAAACACTGTATCCTTGATGTGTCTGGAAATGCCATAAAG 2417
Sbjct 2694 -------------------------------------------------------------------------- 2693
Query 2418 AGATTACAGATTGCACAGCTTTACCCTATCTCCATTTTTATTAAACCCAAATCCATGGAAAATATCATGGAAAT 2491
Sbjct 2694 -------------------------------------------------------------------------- 2693
Query 2492 GAATAAGCGTCTAACAGAAGAACAAGCCAGAAAAACATTTGAGAGAGCCATGAAACTGGAACAGGAGTTTACTG 2565
Sbjct 2694 -------------------------------------------------------------------------- 2693
Query 2566 AACATTTCACAGCTATTGTACAGGGGGATACGCTGGAAGACATTTACAACCAAGTGAAACAGATCATAGAAGAA 2639
Sbjct 2694 -------------------------------------------------------------------------- 2693
Query 2640 CAATCTGGTTCTTACATCTGGGTTCCGGCAAAAGAAAAGCTA 2681
Sbjct 2694 ------------------------------------------ 2693
