Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14616
- Subject:
- NM_021120.4
- Aligned Length:
- 2566
- Identities:
- 1370
- Gaps:
- 1137
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGCACAAGCACCAGCACTGCTGTAAGTGCCCTGAGTGCTATGAGGTGACCCGCCTGGCCGCCCTGCGGCGCCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGAGCCTCCGGGCTACGGCGACTGGCAAGTCCCCGACCCTTACGGGCCAGGTGGGGGCAACGGCGCCAGCGCGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTTATGGGGGCTACAGCTCGCAGACCTTGCCCTCGCAGGCGGGGGCCACCCCCACCCCTCGCACCAAGGCCAAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTCATCCCCACCGGCCGGGATGTGGGGCCGGTGCCTCCTAAGCCAGTCCCGGGCAAGAGCACCCCCAAACTCAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CGGCAGCGGCCCCAGCTGGTGGCCAGAGTGCACCTGTACCAACCGGGACTGGTATGAGCAGGTGAATGGCAGTG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATGGCATGTTCAAATATGAGGAAATCGTACTTGAGAGGGGCAACTCTGGCCTGGGCTTCAGTATCGCAGGTGGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATCGACAATCCCCATGTCCCTGATGACCCTGGCATCTTTATTACCAAGATTATCCCTGGTGGAGCAGCTGCCAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGATGGGAGGCTGGGGGTGAATGACTGTGTGCTGCGGGTGAATGAGGTGGACGTGTCGGAGGTGGTACACAGCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGGCGGTGGAGGCGCTGAAGGAGGCAGGCCCTGTGGTGCGATTGGTGGTGCGGAGGCGACAGCCTCCACCCGAG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ACCATCATGGAGGTCAACCTGCTCAAAGGGCCCAAAGGCCTGGGTTTCAGCATTGCTGGGGGTATTGGCAACCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GCACATCCCAGGAGACAACAGCATCTACATCACCAAGATCATTGAGGGGGGTGCTGCTCAGAAGGATGGACGCC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TACAGATTGGGGACCGGCTGCTGGCGGTGAACAACACCAATCTGCAGGATGTGAGGCACGAGGAAGCTGTGGCC 888
Query 1 ---------------------ATGGAG-------AGG-------GCCCG-------------------CAAGTT 20
||||.| ||| |||.| ||.||.
Sbjct 889 TCACTGAAGAACACATCTGATATGGTGTATTTGAAGGTGGCCAAGCCAGGCAGCCTCCACCTCAACGACATGTA 962
Query 21 CTCGGGCTCC----GGCTTGGCCATGG----------GCTTGGGCT-----CCGCCTCCGC------TTCGGCC 69
| ||||| |.||..|||| | ||.|.|||| ||.|.|..|| |.|.|||
Sbjct 963 C----GCTCCCCCTGACTACGCCA--GCACTTTTACTGCCTTGGCTGACAACCACATAAGCCATAATTCCAGCC 1030
Query 70 TGGAGGA-----GGGCTTCGCAGAGGTGGG--------CCTG---------------------GCCGCTCCGCT 109
|||...| |||||..|.||||...|| |||| .|||||.|.||
Sbjct 1031 TGGGTTATCTCGGGGCTGTGGAGAGCAAGGTCAGCTACCCTGCTCCTCCTCAGGTTCCCCCCACCCGCTACTCT 1104
Query 110 C-------------CCTGC-GGCCCGGAGG-GGA---TGCCAGAGAGCCTCGCAAGATCATCCTGCACAAAGGC 165
| |.||| || |.|||| ||| ..|||||||||||||||||||||||||||||||||||
Sbjct 1105 CCTATTCCCAGGCACATGCTGG--CTGAGGAGGACTTCACCAGAGAGCCTCGCAAGATCATCCTGCACAAAGGC 1176
Query 166 TCCACAGGCCTGGGCTTCAACATCGTAGGAGGAGAGGATGGAGAAGGCATTTTTGTCTCCTTCATCCTGGCAGG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 TCCACAGGCCTGGGCTTCAACATCGTAGGAGGAGAGGATGGAGAAGGCATTTTTGTCTCCTTCATCCTGGCAGG 1250
Query 240 AGGCCCAGCTGACCTGAGTGGGGAGCTGCGCAGGGGAGACCGGATCTTATCGGTGAATGGAGTGAATCTGAGGA 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251 AGGCCCAGCTGACCTGAGTGGGGAGCTGCGCAGGGGAGACCGGATCTTATCGGTGAATGGAGTGAATCTGAGGA 1324
Query 314 ATGCAACTCATGAGCAGGCTGCAGCTGCTCTGAAACGGGCCGGCCAGTCAGTCACCATTGTGGCCCAATACAGA 387
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct 1325 ATGCAACTCATGAGCAGGCTGCAGCTGCTCTGAAACGGGCCGGCCAGTCAGTCACCATTGTGGCCCAGTACAGA 1398
Query 388 CCTGAAGAATACAGTCGCTTTGAATCGAAGATACATGACTTACGAGAACAAATGATGAACAGCAGCATGAGCTC 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1399 CCTGAAGAATACAGTCGCTTTGAATCGAAGATACATGACTTACGAGAACAAATGATGAACAGCAGCATGAGCTC 1472
Query 462 TGGGTCTGGGTCCCTCCGAACAAGTGAGAAGAGGTCCTTGTATGTCACGGCCCTGTTTGATTATGATCGGACTC 535
|||||||||||||||||||||||||||.|||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 1473 TGGGTCTGGGTCCCTCCGAACAAGTGAAAAGAGGTCCTTGTATGTCAGGGCCCTGTTTGATTATGATCGGACTC 1546
Query 536 TGGACAGCTGCCTGCCAAGCCAGGGGCTCAGCTTCTCTTATGGTGACATTCTGCATGTCATTAATGCCTCTGAT 609
.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1547 GGGACAGCTGCCTGCCAAGCCAGGGGCTCAGCTTCTCTTATGGTGACATTCTGCATGTCATTAATGCCTCTGAT 1620
Query 610 GATGAGTGGTGGCAGGCAATGCTGGTGACCCCACACAGAGAAAGTGAGCATATCGGTGTGATCCCCAGTAAGAG 683
|||||||||||||||||||.||||||||||||||||.|||||||||||||.||||||||||||||||||||||.
Sbjct 1621 GATGAGTGGTGGCAGGCAAGGCTGGTGACCCCACACGGAGAAAGTGAGCAGATCGGTGTGATCCCCAGTAAGAA 1694
Query 684 CAGGGTGGAATAGAAATAACCAGCTTCGAT--ACAAACTGTGAACTTTCATGCCAGGACGGGGATGGAGTGAGT 755
.|||||||||.|||||.||..||| ||||| | ||||||||||.||.||||||||||||||||| ||.|||||
Sbjct 1695 GAGGGTGGAAAAGAAAGAAAGAGC-TCGATTGA-AAACTGTGAAGTTCCATGCCAGGACGGGGAT-GATTGAGT 1765
Query 756 CCAATGCAGTTCTGATCAGAATCCCAGACGTAGNAAGAGTTTCGGCCTCTCTCGAAAGTTTCCATT-TTACAAG 828
|.|| ||| .||.|.||.| |.||| ||||..|.||| ||| ..|
Sbjct 1766 CTAA--CAG--------GGACTTCCCG---------GGGTT--------------AAGTGACGATTATTA-TGG 1805
Query 829 AGCAAAGAAAACATGGCCCAGGAGAGCAGCATACAGGAACAGGGGAGTGACATCCAACACCCAGTGACAGCGAA 902
||||||| |||.||
Sbjct 1806 AGCAAAG--AACCTG----------------------------------------------------------- 1818
Query 903 AGCAGTTCCAAAGGACAAGAGGATGCTATTTTGTCATATGAGCCAGTGACACGGCAAGAAATTCACTATGCAAG 976
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1819 ---------AAAGGACAAGAGGATGCTATTTTGTCATATGAGCCAGTGACACGGCAAGAAATTCACTATGCAAG 1883
Query 977 GCCTGTGATCATCCTGGGCCCAATGAAGGACCGAGTCAATGATGACCTGATCTCCGAATTTCCACATAAATTTG 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1884 GCCTGTGATCATCCTGGGCCCAATGAAGGACCGAGTCAATGATGACCTGATCTCCGAATTTCCACATAAATTTG 1957
Query 1051 GATCCTGTGTGCCACATACTACCCGGCCTCGACGTGATAATGAGGTGGATGGACAAGACTACCACTTTGTGGTG 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1958 GATCCTGTGTGCCACATACTACCCGGCCTCGACGTGATAATGAGGTGGATGGACAAGACTACCACTTTGTGGTG 2031
Query 1125 TCCCGAGAACAAATGGAGAAAGATATTCAGGACAACAAGTTCATCGAGGCGGGCCAATTTAATGATAACCTCTA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2032 TCCCGAGAACAAATGGAGAAAGATATTCAGGACAACAAGTTCATCGAGGCGGGCCAATTTAATGATAACCTCTA 2105
Query 1199 TGGGACCAGCATCCAGTCAGTGCGGGCAGTTGCAGAGAGGGGCAAGCACTGCATCTTAGATGTTTCCGGCAATG 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2106 TGGGACCAGCATCCAGTCAGTGCGGGCAGTTGCAGAGAGGGGCAAGCACTGCATCTTAGATGTTTCCGGCAATG 2179
Query 1273 CTATCAAGAGACTGCAGCAAGCACAACTTTACCCCATTGCCATTTTCATCAAGCCCAAGTCCATTGAAGCCCTT 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2180 CTATCAAGAGACTGCAGCAAGCACAACTTTACCCCATTGCCATTTTCATCAAGCCCAAGTCCATTGAAGCCCTT 2253
Query 1347 ATGGAAATGAACCGAAGGCAGACATATGAACAAGCAAATAAGATCTATGACAAAGCCATGAAACTGGAGCAGGA 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2254 ATGGAAATGAACCGAAGGCAGACATATGAACAAGCAAATAAGATCTATGACAAAGCCATGAAACTGGAGCAGGA 2327
Query 1421 ATTTGGAGAGTACTTTACAGCCATTGTACAGGGTGACTCACTGGAAGAGATTTATAACAAAATCAAACAAATCA 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2328 ATTTGGAGAGTACTTTACAGCCATTGTACAGGGTGACTCACTGGAAGAGATTTATAACAAAATCAAACAAATCA 2401
Query 1495 TTGAGGACCAGTCTGGGCACTACATTTGGGTCCCATCCCCTGAAAAACTC 1544
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2402 TTGAGGACCAGTCTGGGCACTACATTTGGGTCCCATCCCCTGAAAAACTC 2451
