Construct: ORF ccsbBroadEn_14616
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018887.1_s300c1, BRDN0000458183
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- DLG3 (1741)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1741 | DLG3 | discs large MAGUK scaffold ... | NM_020730.3 | 97.6% | 43.9% | (many diffs) |
| 2 | human | 1741 | DLG3 | discs large MAGUK scaffold ... | XM_017029322.2 | 94.9% | 45.1% | (many diffs) |
| 3 | human | 1741 | DLG3 | discs large MAGUK scaffold ... | XM_017029323.2 | 93.7% | 45.5% | (many diffs) |
| 4 | human | 1741 | DLG3 | discs large MAGUK scaffold ... | XM_017029324.2 | 91% | 46.8% | (many diffs) |
| 5 | human | 1741 | DLG3 | discs large MAGUK scaffold ... | XM_017029325.2 | 72.4% | 18.3% | (many diffs) |
| 6 | human | 1741 | DLG3 | discs large MAGUK scaffold ... | NM_001166278.1 | 69.4% | 15.4% | (many diffs) |
| 7 | human | 1741 | DLG3 | discs large MAGUK scaffold ... | XM_005262248.4 | 69.4% | 15.4% | (many diffs) |
| 8 | human | 1741 | DLG3 | discs large MAGUK scaffold ... | XM_017029326.2 | 69.4% | 15.4% | (many diffs) |
| 9 | human | 1741 | DLG3 | discs large MAGUK scaffold ... | XM_017029327.1 | 62.8% | 16.4% | (many diffs) |
| 10 | human | 1741 | DLG3 | discs large MAGUK scaffold ... | XM_006724625.2 | 57.3% | 22.2% | (many diffs) |
| 11 | human | 1741 | DLG3 | discs large MAGUK scaffold ... | XM_011530883.1 | 55.7% | 22.6% | (many diffs) |
| 12 | human | 1741 | DLG3 | discs large MAGUK scaffold ... | XM_006724626.2 | 54.9% | 22.7% | (many diffs) |
| 13 | human | 1741 | DLG3 | discs large MAGUK scaffold ... | NM_021120.4 | 53.3% | 23.1% | (many diffs) |
| 14 | mouse | 53310 | Dlg3 | discs, large homolog 3 (Dro... | NM_001177779.1 | 91.5% | 43.3% | (many diffs) |
| 15 | mouse | 53310 | Dlg3 | discs, large homolog 3 (Dro... | NM_001177780.1 | 65.7% | 15.4% | (many diffs) |
| 16 | mouse | 53310 | Dlg3 | discs, large homolog 3 (Dro... | XM_006528127.3 | 65.7% | 15.4% | (many diffs) |
| 17 | mouse | 53310 | Dlg3 | discs, large homolog 3 (Dro... | XM_006528124.3 | 54.6% | 22.2% | (many diffs) |
| 18 | mouse | 53310 | Dlg3 | discs, large homolog 3 (Dro... | XM_006528123.3 | 53.5% | 21.7% | (many diffs) |
| 19 | mouse | 53310 | Dlg3 | discs, large homolog 3 (Dro... | NM_016747.4 | 51.3% | 22.2% | (many diffs) |
| 20 | mouse | 53310 | Dlg3 | discs, large homolog 3 (Dro... | NM_001290402.1 | 50.8% | 23.1% | (many diffs) |
| 21 | mouse | 53310 | Dlg3 | discs, large homolog 3 (Dro... | NM_001177778.2 | 49.7% | 22.6% | (many diffs) |
| 22 | mouse | 53310 | Dlg3 | discs, large homolog 3 (Dro... | XR_001782754.1 | 24.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 91
- ORF end:
- 784
- ORF length:
- 693
- Sequence:
-
1 TTTTTTTGAC TGATAGTGAC CTGTTCGTTG CAACAAATTG ATGAGCAATG CTTTTTTATA 61 ATGCCAACTT TGTACAAAAA AGTTGGCACC ATGGAGAGGG CCCGCAAGTT CTCGGGCTCC 121 GGCTTGGCCA TGGGCTTGGG CTCCGCCTCC GCTTCGGCCT GGAGGAGGGC TTCGCAGAGG 181 TGGGCCTGGC CGCTCCGCTC CCTGCGGCCC GGAGGGGATG CCAGAGAGCC TCGCAAGATC 241 ATCCTGCACA AAGGCTCCAC AGGCCTGGGC TTCAACATCG TAGGAGGAGA GGATGGAGAA 301 GGCATTTTTG TCTCCTTCAT CCTGGCAGGA GGCCCAGCTG ACCTGAGTGG GGAGCTGCGC 361 AGGGGAGACC GGATCTTATC GGTGAATGGA GTGAATCTGA GGAATGCAAC TCATGAGCAG 421 GCTGCAGCTG CTCTGAAACG GGCCGGCCAG TCAGTCACCA TTGTGGCCCA ATACAGACCT 481 GAAGAATACA GTCGCTTTGA ATCGAAGATA CATGACTTAC GAGAACAAAT GATGAACAGC 541 AGCATGAGCT CTGGGTCTGG GTCCCTCCGA ACAAGTGAGA AGAGGTCCTT GTATGTCACG 601 GCCCTGTTTG ATTATGATCG GACTCTGGAC AGCTGCCTGC CAAGCCAGGG GCTCAGCTTC 661 TCTTATGGTG ACATTCTGCA TGTCATTAAT GCCTCTGATG ATGAGTGGTG GCAGGCAATG 721 CTGGTGACCC CACACAGAGA AAGTGAGCAT ATCGGTGTGA TCCCCAGTAA GAGCAGGGTG 781 GAATAGAAAT AACCAGCTTC GATACAAACT GTGAACTTTC ATGCCAGGAC GGGGATGGAG 841 TGAGTCCAAT GCAGTTCTGA TCAGAATCCC AGACGTAGNA AGAGTTTCGG CCTCTCTCGA 901 AAGTTTCCAT TTTACAAGAG CAAAGAAAAC ATGGCCCAGG AGAGCAGCAT ACAGGAACAG 961 GGGAGTGACA TCCAACACCC AGTGACAGCG AAAGCAGTTC CAAAGGACAA GAGGATGCTA 1021 TTTTGTCATA TGAGCCAGTG ACACGGCAAG AAATTCACTA TGCAAGGCCT GTGATCATCC 1081 TGGGCCCAAT GAAGGACCGA GTCAATGATG ACCTGATCTC CGAATTTCCA CATAAATTTG 1141 GATCCTGTGT GCCACATACT ACCCGGCCTC GACGTGATAA TGAGGTGGAT GGACAAGACT 1201 ACCACTTTGT GGTGTCCCGA GAACAAATGG AGAAAGATAT TCAGGACAAC AAGTTCATCG 1261 AGGCGGGCCA ATTTAATGAT AACCTCTATG GGACCAGCAT CCAGTCAGTG CGGGCAGTTG 1321 CAGAGAGGGG CAAGCACTGC ATCTTAGATG TTTCCGGCAA TGCTATCAAG AGACTGCAGC 1381 AAGCACAACT TTACCCCATT GCCATTTTCA TCAAGCCCAA GTCCATTGAA GCCCTTATGG 1441 AAATGAACCG AAGGCAGACA TATGAACAAG CAAATAAGAT CTATGACAAA GCCATGAAAC 1501 TGGAGCAGGA ATTTGGAGAG TACTTTACAG CCATTGTACA GGGTGACTCA CTGGAAGAGA 1561 TTTATAACAA AATCAAACAA ATCATTGAGG ACCAGTCTGG GCACTACATT TGGGTCCCAT 1621 CCCCTGAAAA ACTCTTGCCA ACTTTCTTGT ACAAAGTTGG CATTATAAGA AAGCATTGCT 1681 TATCAATTTG TTGCAACGAA CAGGTCACTA TCAGTCAAAA TAAAATCATT ATTGCCATCC 1741 AAGCTGATAT CCCCCCCC