Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14737
- Subject:
- XR_001738774.2
- Aligned Length:
- 3337
- Identities:
- 1308
- Gaps:
- 2029
Alignment
Query 1 -------------------------------------------------------------------------A 1
|
Sbjct 1 CCCTCACGTACCACTCGGCAGAGGCGCGGGGAAACCTGGCGTACTGGCTGTGGCTTCTCTAGCGGGACTCGGCA 74
Query 2 TGAGGCTGGCGCGGCTGCTTCGCGGAGCCGCCTTGGCCGGCCCGGGCCCGGGGCTGCGCGCCGCCGGCTTCAGC 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 TGAGGCTGGCGCGGCTGCTTCGCGGAGCCGCCTTGGCCGGCCCGGGCCCGGGGCTGCGCGCCGCCGGCTTCAGC 148
Query 76 CGCAGCTTCAGCTCGGACTCGGGCTCCAGCCCGGCGTCCGAGCGCGGCGTTCCGGGCCAGGTGGACTTCTACGC 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CGCAGCTTCAGCTCGGACTCGGGCTCCAGCCCGGCGTCCGAGCGCGGCGTTCCGGGCCAGGTGGACTTCTACGC 222
Query 150 GCGCTTCTCGCCGTCCCCGCTCTCCATGAAGCAGTTCCTGGACTTCGGATCAGTGAATGCTTGTGAAAAGACCT 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GCGCTTCTCGCCGTCCCCGCTCTCCATGAAGCAGTTCCTGGACTTCGGATCAGTGAATGCTTGTGAAAAGACCT 296
Query 224 CATTTATGTTTCTGCGGCAAGAGTTGCCTGTCAGACTGGCAAATATAATGAAAGAAATAAGTCTCCTTCCAGAT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CATTTATGTTTCTGCGGCAAGAGTTGCCTGTCAGACTGGCAAATATAATGAAAGAAATAAGTCTCCTTCCAGAT 370
Query 298 AATCTTCTCAGGACACCATCCGTTCAATTGGTACAAAGCTGGTATATCCAGAGTCTTCAGGAGCTTCTTGATTT 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AATCTTCTCAGGACACCATCCGTTCAATTGGTACAAAGCTGGTATATCCAGAGTCTTCAGGAGCTTCTTGATTT 444
Query 372 TAAGGACAAAAGTGCTGAGGATGCTAAAGCTATTTATGACTTTACAGATACTGTGATACGGATCAGAAACCGAC 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TAAGGACAAAAGTGCTGAGGATGCTAAAGCTATTTATGACTTTACAGATACTGTGATACGGATCAGAAACCGAC 518
Query 446 ACAATGATGTCATTCCCACAATGGCCCAGGGTGTGATTGAATACAAGGAGAGCTTTGGGGTGGATCCTGTCACC 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ACAATGATGTCATTCCCACAATGGCCCAGGGTGTGATTGAATACAAGGAGAGCTTTGGGGTGGATCCTGTCACC 592
Query 520 AGCCAGAATGTTCAGTACTTTTTGGATCGATTCTACATGAGTCGCATTTCAATTAGAATGTTACTCAATCAGCA 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AGCCAGAATGTTCAGTACTTTTTGGATCGATTCTACATGAGTCGCATTTCAATTAGAATGTTACTCAATCAGCA 666
Query 594 CTCTTTATTGTTTGGTGGAAAAGGCAAAGGAAGTCCATCTCATCGAAAACACATTGGAAGCATAAATCCAAACT 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CTCTTTATTGTTTGGTGGAAAAGGCAAAGGAAGTCCATCTCATCGAAAACACATTGGAAGCATAAATCCAAACT 740
Query 668 GCAATGTACTTGAAGTTATTAAAGATGGCTATGAAAATGCTAGGCGTCTGTGTGATTTGTATTATATTAACTCT 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GCAATGTACTTGAAGTTATTAAAGATGGCTATGAAAATGCTAGGCGTCTGTGTGATTTGTATTATATTAACTCT 814
Query 742 CCCGAACTAGAACTTGAAGAACTAAATGCAAAATCACCAGGACAGCCAATACAAGTGGTTTATGTACCATCCCA 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CCCGAACTAGAACTTGAAGAACTAAATGCAAAATCACCAGGACAGCCAATACAAGTGGTTTATGTACCATCCCA 888
Query 816 TCTCTATCACATGGTGTTTGAACTTTTCAAGAATGCAATGAGAGCCACTATGGAACACCATGCCAACAGAGGTG 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TCTCTATCACATGGTGTTTGAACTTTTCAAGAATGCAATGAGAGCCACTATGGAACACCATGCCAACAGAGGTG 962
Query 890 TTTACCCCCCTATTCAAGTTCATGTCACGCTGGGTAATGAGGATTTGACTGTGAAGATGAGTGACCGAGGAGGT 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TTTACCCCCCTATTCAAGTTCATGTCACGCTGGGTAATGAGGATTTGACTGTGAAGATGAGTGACCGAGGAGGT 1036
Query 964 GGCGTTCCTTTGAGGAAAATTGACAGACTTTTCAACTACATGTATTCAACTGCACCAAGACCTCGTGTTGAGAC 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GGCGTTCCTTTGAGGAAAATTGACAGACTTTTCAACTACATGTATTCAACTGCACCAAGACCTCGTGTTGAGAC 1110
Query 1038 CTCCCGCGCAGTGCCTCTGGCTGGTTTTGGTTATGGATTGCCCATATCACGTCTTTACGCACAATACTTCCAAG 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CTCCCGCGCAGTGCCTCTGGCTGGTTTTGGTTATGGATTGCCCATATCACGTCTTTACGCACAATACTTCCAAG 1184
Query 1112 GAGACCTGAAGCTGTATTCCCTAGAGGGTTACGGGACAGATGCAGTTATCTACATTAAGGCTCTGTCAACAGAC 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GAGACCTGAAGCTGTATTCCCTAGAGGGTTACGGGACAGATGCAGTTATCTACATTAAGGCTCTGTCAACAGAC 1258
Query 1186 TCAATAGAAAGACTCCCAGTGTATAACAAAGCTGCCTGGAAGCATTACAACACCAACCACGAGGCTGATGACTG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCAATAGAAAGACTCCCAGTGTATAACAAAGCTGCCTGGAAGCATTACAACACCAACCACGAGGCTGATGACTG 1332
Query 1260 GTGCGTCCCCAGCAGAGAACCCAAAGACATGACGACGTTCCGCAGTGCC------------------------- 1308
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GTGCGTCCCCAGCAGAGAACCCAAAGACATGACGACGTTCCGCAGTGCCTAGACACACTTGGGACATCGGAAAA 1406
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1407 TCCAAATGTGGCTTTTGTATTAAATTTGGAAGGCTAACCTCTCAAGCTCTTGAAGGTTATAAGAGGGATTGATA 1480
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1481 GTCCATGATTCAGGTCTTGAGATAAAAGGCACGAACGTCCCTCCCAAGGTGAGTTATTTGAGTCTGTCATCCAA 1554
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1555 TTGGATGAACTTTGTTAATAGTTATACTTCTTACATTGCCTCAGGAGCTACAAAATGCTAACGTGTTGACTTTG 1628
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1629 ATCCATAGAGATGTTTTGATTTTTTATGATGTAGATGTTCCTGCAAAATGACTTATCTTTATAGGAAGGATGAT 1702
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1703 AAAAAATCTAATTCCCTGCCGTGTTTTGGGTGTCTTTTTTTTTTTTTAAAAGCACAACTTAATAGCTTGTCTTT 1776
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1777 GCAACTGTTATTCTGAGTATCTTTTCTTTATCATATATTGTAGGATAAGTTTATTTTGCAGTTACTTGTTTTGC 1850
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1851 GTCATCCTAGTCTTTGTTAAATCTAAAGACCTTGAACAAATTTGGTTTTCTTTCTCATCAACCACTAAGACCCG 1924
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1925 TAAGATTTTGTCACCTTTATATATCACTACTATAAATAATTATGTTATAACTATGAATAATTGATATCTGATAA 1998
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1999 TTATATGAATAAATAATATATATATCATTCAAAGATAAATTTTTTATTCTTTAGGAATTTTCAAGCTAAAATAA 2072
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2073 CCAAAATAGATTGGAATGTATCTGTAAGTTAATGCTTTTTTTTTAAGCTCTTAATATATTTAGGCCTCAGTTGC 2146
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2147 TCCCTCAGAGGATTATAATACTTCTTCCCTCTATTGGTTTTTTTTTTTTTGGTTGTTGTAAAAATAACTTGAAC 2220
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2221 TATAGGTTGTGAAGTTTCTTTGTAAATTACTGTCTAAATGATTGTATTTGATATAATGACTATTCTTGATATAG 2294
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2295 CACACACTGATAATGTAATAAACCAATAAATCTGAGCACACGTGAGTCATAAGGGGTAATTACATCTCTTTTTA 2368
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2369 TCTGTGTGTCTATGGTGAAACATGAATGCAGAAGAGAAAGAGAAGAGGCAATGTTTCTGTCTTAGAGTAATAGT 2442
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2443 TTATCATTGCCCTTAGGATATCCCTAGCAAGTTACAATGAAAGTGAAGACAGGTAACACAGTAAAAAGTGAAAT 2516
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2517 ACATTTCAGAGAAGGGAAAACAAGATAAAAATTTGGAGAAAGATGAATTCTCAATAAATATTTATTTCATGAGT 2590
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2591 GAACAAATTAATTGGATAGGAGAGAGAAAGTCAGCTGCCGTTTTTCTCTTACTATTTATATGGGAAACCTCCAG 2664
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2665 AAAGATAAGCACCATGAGTTGGTAGAAGTGGGAATCTTGGTAAGGAGAGCGTACTTGACTTTGAAAGAGACAAG 2738
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2739 AAGTATTCTTGCAATGTTTGTAGGTCTGCAGAGAGGAAGACAAATGTAGATCCTTCCCAGAACTATTGATTTTA 2812
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2813 TATTCTTTATCTCTGAATCAGTTGAGCCTCTCATTTTAGTCATTCTCCTCCCTTTTCAAGCTGTTTAAAGTTTG 2886
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2887 AAATTAGCATCATACATCAGAACAAACTCTCTTGCTAAGTCATAGCTCTCCTTTATGTGTTCAGTGATTGTATT 2960
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2961 TTTATCCATGAATCACCAGTTCTCTAGATGACATACCTTCCTTCCTCCACTCCTTGCTAAGTAAATTTGTTTAT 3034
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3035 TTCACCATTTGTTCTCTTCACAGTCTAAATGTTAAGCACATTCCCATAATTATTGAGGATTTGTGATTTTTAAA 3108
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3109 TAATGACCCCAAAAGGCTGCTGAGACCTCCCTATCCAAGCACACCTCGTTTAATTGTGCTTTGCTTTATTACCC 3182
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3183 TTCACAGATACTGCATTTTTTACAAGTTGAAGATTTGTGGCAACTCTTCATTGAGCAAGTCCATCAGTATCATT 3256
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3257 TTTCTTTCTTTTTTTTTTTAAAAAACAAGATGCTTTTCTTTGTATTTTTACAATATCATTCAATAAAAAGCAGT 3330
Query 1309 ------- 1308
Sbjct 3331 AGAAACA 3337
