Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14737
- Subject:
- XR_427095.3
- Aligned Length:
- 4245
- Identities:
- 1231
- Gaps:
- 3014
Alignment
Query 1 -------------------------------------------------------------------------A 1
|
Sbjct 1 CCCTCACGTACCACTCGGCAGAGGCGCGGGGAAACCTGGCGTACTGGCTGTGGCTTCTCTAGCGGGACTCGGCA 74
Query 2 TGAGGCTGGCGCGGCTGCTTCGCGGAGCCGCCTTGGCCGGCCCGGGCCCGGGGCTGCGCGCCGCCGGCTTCAGC 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 TGAGGCTGGCGCGGCTGCTTCGCGGAGCCGCCTTGGCCGGCCCGGGCCCGGGGCTGCGCGCCGCCGGCTTCAGC 148
Query 76 CGCAGCTTCAGCTCGGACTCGGGCTCCAGCCCGGCGTCCGAGCGCGGCGTTCCGGGCCAGGTGGACTTCTACGC 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CGCAGCTTCAGCTCGGACTCGGGCTCCAGCCCGGCGTCCGAGCGCGGCGTTCCGGGCCAGGTGGACTTCTACGC 222
Query 150 GCGCTTCTCGCCGTCCCCGCTCTCCATGAAGCAGTTCCTGGACTTCGGATCAGTGAATGCTTGTGAAAAGACCT 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GCGCTTCTCGCCGTCCCCGCTCTCCATGAAGCAGTTCCTGGACTTCGGATCAGTGAATGCTTGTGAAAAGACCT 296
Query 224 CATTTATGTTTCTGCGGCAAGAGTTGCCTGTCAGACTGGCAAATATAATGAAAGAAATAAGTCTCCTTCCAGAT 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CATTTATGTTTCTGCGGCAAGAGTTGCCTGTCAGACTGGCAAATATAATGAAAGAAATAAGTCTCCTTCCAGAT 370
Query 298 AATCTTCTCAGGACACCATCCGTTCAATTGGTACAAAGCTGGTATATCCAGAGTCTTCAGGAGCTTCTTGATTT 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AATCTTCTCAGGACACCATCCGTTCAATTGGTACAAAGCTGGTATATCCAGAGTCTTCAGGAGCTTCTTGATTT 444
Query 372 TAAGGACAAAAGTGCTGAGGATGCTAAAGCTATTTATGACTTTACAGATACTGTGATACGGATCAGAAACCGAC 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TAAGGACAAAAGTGCTGAGGATGCTAAAGCTATTTATGACTTTACAGATACTGTGATACGGATCAGAAACCGAC 518
Query 446 ACAATGATGTCATTCCCACAATGGCCCAGGGTGTGATTGAATACAAGGAGAGCTTTGGGGTGGATCCTGTCACC 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ACAATGATGTCATTCCCACAATGGCCCAGGGTGTGATTGAATACAAGGAGAGCTTTGGGGTGGATCCTGTCACC 592
Query 520 AGCCAGAATGTTCAGTACTTTTTGGATCGATTCTACATGAGTCGCATTTCAATTAGAATGTTACTCAATCAGCA 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AGCCAGAATGTTCAGTACTTTTTGGATCGATTCTACATGAGTCGCATTTCAATTAGAATGTTACTCAATCAGCA 666
Query 594 CTCTTTATTGTTTGGTGGAAAAGGCAAAGGAAGTCCATCTCATCGAAAACACATTGGAAGCATAAATCCAAACT 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CTCTTTATTGTTTGGTGGAAAAGGCAAAGGAAGTCCATCTCATCGAAAACACATTGGAAGCATAAATCCAAACT 740
Query 668 GCAATGTACTTGAAGTTATTAAAGATGGCTATGAAAATGCTAGGCGTCTGTGTGATTTGTATTATATTAACTCT 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GCAATGTACTTGAAGTTATTAAAGATGGCTATGAAAATGCTAGGCGTCTGTGTGATTTGTATTATATTAACTCT 814
Query 742 CCCGAACTAGAACTTGAAGAACTAAATGCAAAATCACCAGGACAGCCAATACAAGTGGTTTATGTACCATCCCA 815
|||||||||||||||||||||||||||
Sbjct 815 CCCGAACTAGAACTTGAAGAACTAAAT----------------------------------------------- 841
Query 816 TCTCTATCACATGGTGTTTGAACTTTTCAAGAATGCAATGAGAGCCACTATGGAACACCATGCCAACAGAGGTG 889
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 ------------------------------GAATGCAATGAGAGCCACTATGGAACACCATGCCAACAGAGGTG 885
Query 890 TTTACCCCCCTATTCAAGTTCATGTCACGCTGGGTAATGAGGATTTGACTGTGAAGATGAGTGACCGAGGAGGT 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 TTTACCCCCCTATTCAAGTTCATGTCACGCTGGGTAATGAGGATTTGACTGTGAAGATGAGTGACCGAGGAGGT 959
Query 964 GGCGTTCCTTTGAGGAAAATTGACAGACTTTTCAACTACATGTATTCAACTGCACCAAGACCTCGTGTTGAGAC 1037
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GGCGTTCCTTTGAGGAAAATTGACAGACTTTTCAACTACATGTATTCAACTGCACCAAGACCTCGTGTTGAGAC 1033
Query 1038 CTCCCGCGCAGTGCCTCTGGCTGGTTTTGGTTATGGATTGCCCATATCACGTCTTTACGCACAATACTTCCAAG 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 CTCCCGCGCAGTGCCTCTGGCTGGTTTTGGTTATGGATTGCCCATATCACGTCTTTACGCACAATACTTCCAAG 1107
Query 1112 GAGACCTGAAGCTGTATTCCCTAGAGGGTTACGGGACAGATGCAGTTATCTACATTAAGGCTCTGTCAACAGAC 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 GAGACCTGAAGCTGTATTCCCTAGAGGGTTACGGGACAGATGCAGTTATCTACATTAAGGCTCTGTCAACAGAC 1181
Query 1186 TCAATAGAAAGACTCCCAGTGTATAACAAAGCTGCCTGGAAGCATTACAACACCAACCACGAGGCTGATGACTG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182 TCAATAGAAAGACTCCCAGTGTATAACAAAGCTGCCTGGAAGCATTACAACACCAACCACGAGGCTGATGACTG 1255
Query 1260 GTGCGTCCCCAGCAGAGAACCCAAAGACATGACGACGTTCCGCAGTGCC------------------------- 1308
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 GTGCGTCCCCAGCAGAGAACCCAAAGACATGACGACGTTCCGCAGTGCCTAGACACACTTGGGACATCGGAAAA 1329
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1330 TCCAAATGTGGCTTTTGTATTAAATTTGGAAGGTATGGTGTTCAGAACTATATTATACCAAGTACTTTATTTAT 1403
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1404 CGTTTTCACAAAACTATTTGAGTAGAATAAATGGAAACTGAATTCCATTTGTGCCCGTTAAACCTCCTAAAGGA 1477
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1478 TGAAATTGCACCTATTTTACACTTATATTTTCACAGTTAATTGAACATATTTTTAAACAACTGTAGTTTTGGGC 1551
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1552 AACTTTTCACTTTGTGGTAGACTTCAGAAGTGTGGAAATCTTCGGGTTTCTATAGGAAACTAGTTTTTTTTTTT 1625
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1626 TAAGAAATACTTTCATTTATGTTTGCTAGAAACATTTTCTAAATGATAGTGATTAGCTGGTTAGCCATCTTCCT 1699
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1700 GTTATTTGGAGGAGTTCTGCCATCTTTTATTCGGTAGTGACAGCTGTAATATGGTCTTCATGTTTATCAGTGAC 1773
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1774 TTGACTACAAGTAAAGCAGAAAACAGTTGGCCTGTAATCACAGAACCAGCCACCCTTCGGCGTCTACATGCATT 1847
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1848 GTCTTAGCTCTGAGGTTAATTTACCATTTTTAAATTTTATTGTAAAGAAGTGTAATGACTAGCTCTCTGTGGAT 1921
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1922 CTATGCCAAAATCATGGGCCATCTTTTCTAAGTGTACTTCTGATTAATGCAAGGGGAAATTTTTATACTGAAAA 1995
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1996 CAAACAAACAAACTAGCAGCTACTAAAATAGAGAAGAAATTGAGGGCAAAGTAATATGTCTCCAAAACTGAACT 2069
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2070 GATTGCTTGTTGAGATTACCTAGAAAGCTTTTGGAAAAAAATAGAGCTTTTCTGCATCCTACTCCAGATACACT 2143
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2144 GAATCGGAATCCCTAGGGCTAGAGCCTAGAAATCTCACTTTTTAAAATGCTTCCAAGGTAAGTCTGATGCCTAC 2217
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2218 CCTAGGTTGGGAACCACTCTTTCAAAGTAAACAGTGATGACACAGCATTTGCTAAAGTAACATCTGTAGGTTTT 2291
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2292 GGTTTCCACCTATTTAAAGTCAGATTTATAGACTCGAGGAGACAGAAACTGAATCCCACACCTGGTGCAATTAG 2365
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2366 AAGCATAATTAGAAGCAGAAGAACAAAATGCCACGTAACCAAAGCATCAGAGCCATCATTGCACGTGTCTTTTT 2439
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2440 TTCTTTTTTCTTTTTTTTTTTTCAAGACAGGGTCTCGCTCTTTTGCCCAGGATGGAGTACAGTGGCATGGTCAA 2513
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2514 GGCTCACTGCAGCTTCAATCTTCTGGGCTCAAGTAATCCTTCCACCTCAGCCTCCCATATAGCTGGAACTACAG 2587
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2588 TTGTGCACTACCACACCCAGCTAATTTTTTGATTTCTTGTGGAGATGAGGTCTCAGTATGTTCCCAGGCTAGTG 2661
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2662 TTGAACTCCTGAGCTCAAGAAATCCTCCTGCCTGAGTCTCTGAAAGTGCTGGGATTACAGGCGTGAGCCACCAC 2735
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2736 ACATGGCCTATTGCACAAGTCTTGACAAACAACATATATTTTCTAAAACTATCCAGATTTCATTATCAGGGAAA 2809
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2810 AGTTTGCTTAGGTTTATTACAGCAGTCCTTGGCATTTGTATGGTAATTTGTACTTTACAAATACTTTGATATAT 2883
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2884 TATAACTCTATTGGTCTTTGAAACAAAGCGATACAGTGTAGGTGGTATCATTCTCTTTCTCACTCAGTGTGGCC 2957
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2958 CAGAGTTGCTCAGAATTGGAGCAGAGCCTGAGACGTATCTGCAGATCCTGTCATCAGCTGGCAAGTCCAGGAGA 3031
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3032 CTGTGTCATTTAGAGACTGTGTTGTTAGTTATCCCTCAACATCTTCTAAGGTGGCAGGAAATAATATTGGAAAT 3105
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3106 AACATTTTAAAGTAAAAATTTTAAAGTTTAAAGAAGAGTTTTGCCACTTAAACAGGGGAGCTTTGTCTGGAAAA 3179
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3180 TACACTGAGTTGAAACACTTCATCCTTGGAAGGATTATATAAGATGAACAGTTGTGATAAATGTGTAGATTAGA 3253
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3254 GGGATGTGAATGGGCAGTTAGTCCAGTGCCCTCATTTAAGAGGCCAAGATCCTGATTCAGAGGAGGCATCCTTT 3327
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3328 GCCCAGAGCTGCTTAGCTAATCTGACCAAATGTTGGGAAAAATGTCTCACCTAACCCACTATTCCTTAATTATG 3401
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3402 GATTTTGTGAAAAACAATAGAACATGTTAATGAGTAATTTATATTAGTTCGATGTATTACAATTTTTTAGCTTT 3475
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3476 AAATTACAGTTTTCTTATAATGTTGAAATGTTTTAGAATCCTTTGAATCTAAGTATTTGTTTCCTAAATGAAAC 3549
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3550 ATTTGTACAACATTTGATGTTTTTACTTATGAAATATTCTCCTCCCCCAAGAAAATTTAAACTTTTTCTCTCTA 3623
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3624 TTTAAAAGCTAAGAAATGTTTTAAAGGAAAAATGAAATTATCTTCCTTTAGCTTATTTTTAAGGTAAAACAGCT 3697
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3698 TTTTACTCTGTTATTGTGGTAATGGACAGAATATTACATACAAAAATATTCTGGGAGAGCTTTTTCCTAGTTGG 3771
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3772 TTTTAAATCATTGTGCCACCTGAAAGGTTTTTAGATTTTATAGGAGCTAATTTGTCCACCAGCATTAATGTAAC 3845
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3846 ACAGTGTAGTTATGAAAATATATTGAAGGACAGGAAGTGGACACGAAGTGATTTTTGTAACCTGAGCAGTTAAT 3919
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3920 GAATGTGCCAACATTTTCTAGGAAGGGACAGCAAGAATATTCTGCTCTGTAGTTAAAATACTGGCTGGCTTTTG 3993
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3994 ATGTCTTCATGCTTAATTGTGATCACTTTCTTGCACTGTGATGTTTTTACGTGAATATGTTGAAGTAGAAGTCT 4067
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 4068 ACCATATTATTTTATAAAATGTTTTCTGTATGGCAATAAACTGAAAACATGGATCAACCCTTCTTTTGAAAATA 4141
Query 1309 --------------------------- 1308
Sbjct 4142 AACTGAGTCAATTTAGCCTTTTAAAAA 4168
