Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_14790
• Subject: XR_939695.2
• Aligned Length: 3069
• Identities: 1669
• Gaps: 1323

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGTGCTGGCCTGCGCCCCCGAGCCGGATCGGCGGCCGCCCGGACTCCGAGCCCGCGCGGATGTGAGATTCCGGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTCCTGGCGCCTCCCGATCGCCGGCTCCGGCGCGGCGCTGCTTCGCCCAGGAGGCGGCGGCCCCGGCTGGCCGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGGGCTTGTGGATTTTTAAAAATTTGGCTCCGAGGAGGACCATTTCCTCTCGACATGCATCCCTCCGGATAGAC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGAACATCCCTCCGTTCACCCCCCCGCCCCGCGCGGTCAGAGGCAGGCGCTGAGTGTGCGAAGAGGATCCGGGT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TGAAATCTGCGCCCCCGGTTCTCGTCCCCGCCCCGTCCCACCGCCCCATCCCCCTCCCGGAGTCGAAATTTCCC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GGGATTATGTTTCGGAAAGGTAGGTAAGCGCCGGGCGCGGCGCCCGCTTTCCCGCAGTCCGGAGCCGGAGAGCC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AGCGAGGCGGCGAGGCAGCCCCCGCGGCTTGCAGCGGAGCCGACAGCTCGTCTTCTCTTCTGGAGGTGCAGCTG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GTGGTCGGGGGGAGAGACTTGCTCCAAACACGGACATCCCCCAGCTCTCCCCCCTCCCTGTTTTCCGTTAGGAA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCCGGCGAGGAAATACATGCACTGGCTGAGAATCGCCCGCGCCAGGGCGCAACGCCACAAGGTGTAGGGAGTGT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GCGGGGTGGGGCGAAAGGGGACCCAAGAGTCCCTGTGGCTCGGAGTGCCGGGCCGTCGGTTCTTCATTCCTGCC  740

Query    1  ----------------------------------------------ATGGTAGTGTTCAATGGCCTTCTTAAGA  28
                                                          ||||||||||||||||||||||||||||
Sbjct  741  CTCGGGGCAGACGGAGTGACCCCGGCCCCCACTCCCCGCCCCGACCATGGTAGTGTTCAATGGCCTTCTTAAGA  814

Query   29  TCAAAATCTGCGAGGCCGTGAGCTTGAAGCCCACAGCCTGGTCGCTGCGCCATGCGGTGGGACCCCGGCCGCAG  102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TCAAAATCTGCGAGGCCGTGAGCTTGAAGCCCACAGCCTGGTCGCTGCGCCATGCGGTGGGACCCCGGCCGCAG  888

Query  103  ACTTTCCTTCTCGACCCCTACATTGCCCTCAATGTGGACGACTCGCGCATCGGCCAAACGGCCACCAAGCAGAA  176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ACTTTCCTTCTCGACCCCTACATTGCCCTCAATGTGGACGACTCGCGCATCGGCCAAACGGCCACCAAGCAGAA  962

Query  177  GACCAACAGCCCGGCCTGGCACGACGAGTTCGTCACCGATGTGTGCAACGGACGCAAGATCGAGCTGGCTGTCT  250
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GACCAACAGCCCGGCCTGGCACGACGAGTTCGTCACCGATGTGTGCAACGGACGCAAGATCGAGCTGGCTGTCT  1036

Query  251  TTCACGATGCCCCCATAGGCTACGACGACTTCGTGGCCAACTGCACCATCCAGTTTGAGGAGCTGCTGCAGAAC  324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TTCACGATGCCCCCATAGGCTACGACGACTTCGTGGCCAACTGCACCATCCAGTTTGAGGAGCTGCTGCAGAAC  1110

Query  325  GGGAGCCGCCACTTCGAGGACTGGATTGATCTGGAGCCAGAAGGAAGAGTGTATGTGATCATCGATCTCTCAGG  398
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GGGAGCCGCCACTTCGAGGACTGGATTGATCTGGAGCCAGAAGGAAGAGTGTATGTGATCATCGATCTCTCAGG  1184

Query  399  GTCGTCGGGTGAAGCCCCTAAAGACAATGAAGAGCGTGTGTTCAGGGAACGCATGCGGCCGAGGAAGCGGCAGG  472
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GTCGTCGGGTGAAGCCCCTAAAGACAATGAAGAGCGTGTGTTCAGGGAACGCATGCGGCCGAGGAAGCGGCAGG  1258

Query  473  GGGCCGTCAGGCGCAGGGTCCATCAGGTCAACGGCCACAAGTTCATGGCCACCTATCTTCGGCAGCCCACCTAC  546
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  GGGCCGTCAGGCGCAGGGTCCATCAGGTCAACGGCCACAAGTTCATGGCCACCTATCTTCGGCAGCCCACCTAC  1332

Query  547  TGCTCCCATTGCAGAGACTTCATCTGGGGTGTCATAGGAAAGCAGGGATACCAGTGTCAAGTCTGCACCTGCGT  620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  TGCTCCCATTGCAGAGACTTCATCTGGGGTGTCATAGGAAAGCAGGGATACCAGTGTCAAGTCTGCACCTGCGT  1406

Query  621  GGTCCACAAGCGGTGCCACGAGCTCATAATCACAAAGTGTGCTGGGGTTAAGAAGCAGGAAACCCCCGAACAGG  694
            ||||||||||||||||||||||||||||||||||||||||||||||.|.|||||||||||.||||||||.||||
Sbjct 1407  GGTCCACAAGCGGTGCCACGAGCTCATAATCACAAAGTGTGCTGGGTTAAAGAAGCAGGAGACCCCCGACCAGG  1480

Query  695  TGGGCTCCCAGCGGTTCAACCGTC-ACATGGCCCCA-AAGTTCGGTATCCACAACTACAAGGTCCCTACCTTCT  766
            ||||||||||||||||| |.|||| |||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1481  TGGGCTCCCAGCGGTTC-AGCGTCAACAT-GCCCCACAAGTTCGGTATCCACAACTACAAGGTCCCTACCTTCT  1552

Query  767  GCGATCACTGTGGGTCCCTGCTCTGGGGACTCTTGCGGCAGGGTTTGCAGTGTAAAGTCTGCAAAATGAATGTT  840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553  GCGATCACTGTGGGTCCCTGCTCTGGGGACTCTTGCGGCAGGGTTTGCAGTGTAAAGTCTGCAAAATGAATGTT  1626

Query  841  CACCGTCGATGTGAGACCAACGTGGCTCCCAACTGTGGAGTGGATGCCAGAGGAATCGCCAAAGTACTGGCCGA  914
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1627  CACCGTCGATGTGAGACCAACGTGGCTCCCAACTGTGGAGTGGATGCCAGAGGAATCGCCAAAGTACTGGCCGA  1700

Query  915  CCTGGGCGTTACCCCAGACAAAATCACCAACAGCGGCCAGAGAAGGAAAAAGCTCATTGCTGGTGCCGAGTCCC  988
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1701  CCTGGGCGTTACCCCAGACAAAATCACCAACAGCGGCCAGAGAAGGAAAAAGCTCATTGCTGGTGCCGAGTCCC  1774

Query  989  CGCAGCCTGCTTCTGGAAGCTCACCATCTGAGGAAGATCGATCCAAGTCAGCACCCACCTCCCCTTGTGACCAG  1062
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1775  CGCAGCCTGCTTCTGGAAGCTCACCATCTGAGGAAGATCGATCCAAGTCAGCACCCACCTCCCCTTGTGACCAG  1848

Query 1063  GAAATAAAAGAACTTGAGAACAACATTCGGAAAGCCTTGTCATTTGACAACCGAGGAGAGGAGCACCGGGCAGC  1136
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1849  GAAATAAAAGAACTTGAGAACAACATTCGGAAAGCCTTGTCATTTGACAACCGAGGAGAGGAGCACCGGGCAGC  1922

Query 1137  ATCGTCTCCTGATGGCCAGCTGATGAGCCCCGGTGAGAATGGCGAAGTCCGGCAAGGCCAGGCCAAGCGCCTGG  1210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1923  ATCGTCTCCTGATGGCCAGCTGATGAGCCCCGGTGAGAATGGCGAAGTCCGGCAAGGCCAGGCCAAGCGCCTGG  1996

Query 1211  GCCTGGATGAGTTCAACTTCATCAAGGTGTTGGGCAAAGGCAGCTTTGGCAAGGTCATGTTGGCAGAACTCAAG  1284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1997  GCCTGGATGAGTTCAACTTCATCAAGGTGTTGGGCAAAGGCAGCTTTGGCAAGGTCATGTTGGCAGAACTCAAG  2070

Query 1285  GGCAAAGATGAAGTATATGCTGTGAAGGTCTTAAAGAAGGACGTCATCCTTCAGGATGATGACGTGGACTGCAC  1358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2071  GGCAAAGATGAAGTATATGCTGTGAAGGTCTTAAAGAAGGACGTCATCCTTCAGGATGATGACGTGGACTGCAC  2144

Query 1359  AATGACAGAGAAGAGGATTTTGGCTCTGGCACGGAAACACCCGTACCTTACCCAACTCTACTGCTGCTTCCAGA  1432
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2145  AATGACAGAGAAGAGGATTTTGGCTCTGGCACGGAAACACCCGTACCTTACCCAACTCTACTGCTGCTTCCAGA  2218

Query 1433  CCAAGGACCGCCTCTTTTTCGTCATGGAATATGTAAATGGTGGAGACCTCATGTTTCAGATTCAGCGCTCCCGA  1506
            |||||                  |.|.||||.|.|    ||.||                              
Sbjct 2219  CCAAG------------------AGGCAATAGGAA----GTTGA------------------------------  2240

Query 1507  AAATTCGACGAGCCTCGTTCACGTTTCTATGCTGCAGAGGTCACATCGGCCCCTCATGTTCTTCCACCAGCATG  1580
                      ||||||   |||.|||            |..|.|||.||..|.|..||||.||     |.||||
Sbjct 2241  ----------AGCCTC---CACTTTT------------GACCTCATTGGAGCATTTTGTTTTT-----ACCATG  2284

Query 1581  GAGTCATCTACAGGGATTTGAAACTGGACAACATCTTTCTGGATGC--AGAAGG-TCACTGCAAGCTGGCTGAC  1651
            ..||    |.||||||                        |.||||  .||||| ||                 
Sbjct 2285  ACGT----TCCAGGGA------------------------GAATGCCAGGAAGGATC-----------------  2313

Query 1652  TTCGGGATGTGCAAGGAAGGGATTCTGAATGGTGTGACGACCACCACGTTCTGTGGGACTCCTGACTACATAGC  1725
                  |||.||||  ||.|.|||||                      .||.||..|.|||||       ||| 
Sbjct 2314  ------ATGGGCAA--AAAGAATTCT----------------------CTCAGTCCGCCTCCT-------TAG-  2349

Query 1726  TCCTGAGATCCTGCAGGAGTTGGAGTATGGCCCCTCCGTGGACTGGTGGGCCCTGGGGGTGCTGATGTACGAGA  1799
               ||.|     ||||||||..||          ||.||                      ||.|.|.||.|||
Sbjct 2350  ---TGTG-----GCAGGAGTATGA----------TCTGT----------------------CTCAAGGACAAGA  2383

Query 1800  ----TGATGGCTGGACAGCCTCCCTTTGAGGCC-----------GACAATGAGGACGACCTATTTGAGTCC--A  1856
                ||.||.||||      ||||.|   ||||           .|.|||||.| ||        .|||||  |
Sbjct 2384  AGTGTGGTGACTGG------TCCCAT---GGCCTATTTAGCTGGAAGAATGAAG-CG--------TAGTCCCTA  2439

Query 1857  TCC----TCCATGACGACGTGCTGTACCCAG-TCTGGCTCA--GCAAGGAGGCTGTCAGCATCTTGAA------  1917
            |||    ||||.|||.|.|      .||.|| |..||||||  .|.|||.||.|.||..||    |||      
Sbjct 2440  TCCTCTTTCCAAGACCAAG------GCCAAGATGGGGCTCAAGACCAGGGGGTTATCTACA----GAACTGCTG  2503

Query 1918  ----AGCTTTCATGACGAAGAATCCCCACAAGCGCCTGGGCTGTGTGGCATCGCAGAATGGCGAGGACGCCATC  1987
                |.|||.||            ||.||     ||||||                        ||||      
Sbjct 2504  GCCCACCTTCCA------------CCTAC-----CCTGGG------------------------GGAC------  2530

Query 1988  AAGCAGCACCCATTCTTCAA-------------------------------AGAGATTGACTGGGTGCTC-CTG  2029
                  |.|||  ||||.||                               .|||||.||.|.|| |||| .||
Sbjct 2531  ------CTCCC--TCTTGAAGGTTGGGATTCTTTTTTTTCTTTTTTTTTTTTGAGATGGAGTCGG-GCTCTGTG  2595

Query 2030  GAGCAGAAGAAGATCAAGCCACCCTTCAAACCACGCATTAAAACCAAAAGAGACGTCAATAATTTTGACCAAGA  2103
            |..||||.                                                                  
Sbjct 2596  GCCCAGAC------------------------------------------------------------------  2603

Query 2104  CTTTACCCGGGAAGAGCCGGTACTCACCCTTGTGGACGAAGCAATTGTAAAGCAGATCAACCAGGAGGAATTCA  2177
                                                                                      
Sbjct 2604  --------------------------------------------------------------------------  2603

Query 2178  AAGGTTTCTCCTACTTTGGTGAAGACCTGATGCCC  2212
                                               
Sbjct 2604  -----------------------------------  2603