Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14796
- Subject:
- XM_024448390.1
- Aligned Length:
- 1928
- Identities:
- 1082
- Gaps:
- 700
Alignment
Query 1 ATGCCCAGCAGGACCGGCCCCAAGATGGAAGGGAGCGGCGGCCGCGTCCGCCTCAAGGCGCATTACGGGGGGGA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 CATCTTCATCACCAGCGTGGACGCCGCCACGACCTTCGAGGAGCTCTGTGAGGAAGTGAGA-GA-CATGTGTCG 146
|.|||.|..|.||| |||.|.| ||.|.|.| || ||| |
Sbjct 1 ----------------------------ATGACATCTGCGGA--TCTTTTA--AAATCATACGATCAT-----G 37
Query 147 TCTGC---ACCAGCA---------GCACC--------CGCTCACCCTCAAGTGGGTGGACAGCGAAGGTG-ACC 199
||||| |||.|.| .|||| |.||.|||| |||| .|| .||
Sbjct 38 TCTGCGAAACCGGGATGCCACTTCCCACCTGGCTTCTCCCTGACCC-------------CAGC----TTGTTCC 94
Query 200 CTTGCA----CGGTGTCCTCCCAGATGGAGCTGGAAGAGGCTTTCCGCCTGGCCCGTCAGTGCAGGGATGA--- 266
||||.| |||||..|||| ||.|||| |||||..||||
Sbjct 95 CTTGGAGGGCCGGTGGACTCC----------------------TCAGCCT----------TGCAGCAATGAAAT 136
Query 267 -AGGCCT------CATCATTCATGTTTTCCCGAGCACCCCTGAGCAGC----CTGGCCTGCCATGTCCGGGAGA 329
|||||| || ||| |||||.|||.|.|| |||.|| ||||| .|
Sbjct 137 CAGGCCTTGAGGCCA-------------CCC---CACCCGTGACCTGCGGTGCTGTCC--CCATG-------CA 185
Query 330 AGACAAAT--CTATCTACCGCCGGGGAGCCAGAAGATGGAGGAAGCTGTACC-GTGCCAACGGCCA--CCTCTT 398
||| ||.| ||..||.|.||| .||||.|||| || ||.|||.|..||| |||..|
Sbjct 186 AGA-AACTGCCTCGCTCCAGCC-----CCCAGCAGAT-------------CCTGTCCCAGCCCCCAGCCCTGGT 240
Query 399 CCAAGCCAAGCGCTTTAACAGGAGAGCGTACTGCGGTCAGTGCAGCGAGAGGATATGGGGCCTCGCGAGGCAAG 472
||||||||
Sbjct 241 CCAAGCCA------------------------------------------------------------------ 248
Query 473 GCTACAGGTGCATCAACTGCAAACTGCTGGTCCATAAGCGCTGCCACGGCC-TCGTCCC---GCTGACCTGCAG 542
|.||.|||.|.|.|||.|| |.| .|||||..|| ||.|.|| ||..|||..||
Sbjct 249 ----------CCTCCACTCCCACCTGGTG------ACG---GGCCACCTCCTTCATTCCGGGGCCCACCCACA- 302
Query 543 GAAGCATATGGATTCTGTCATGCCTTCCCAAGAGCCTCCAGTAGAC----GACAAGAACGAGGACGCCGACCTT 612
||||||||| |||| .|.|| |.||||| |.|.|.||||
Sbjct 303 -----------------------CTTCCCAAG----TCCA-CACACAGTGGCCAAGA--GTGAAGGCCG----- 341
Query 613 CCTTCCGAGGAGACAG-ATGGAATTGCTTACATTTCCTCATCCCGGAAGCATGACAGCATTAAAGACGACTCGG 685
.|||||...|.| ||| |.|.||||| ||.| ||.|.||.|.|| |
Sbjct 342 ----GCGAGGCCCCCGCATG-----------ACTCCCTCA-CCTG---------CACCCTTCACGA-------G 383
Query 686 AGGACCTTAAGCCAGTTATCGATGGGATGGATGGAATCAAAATCTCTCAGGGGCTTGGG-----CTGCAGGACT 754
.||.||...||||.||...| |.||....|||||.|..||..||| ||||.|..||
Sbjct 384 CGGCCCCGCAGCCCGTCCCC---------------ACCAGCCCCTCTCTGCTGCCAGGGTGCTCCTGCTGCTCT 442
Query 755 TTGACCTAATC-AGAGTCATCGGGC-GCGGGAG---------CTACGCCAAGG----TTCTCCTGG---TGCGG 810
|||..||...| |||.|.|.| | ||||||| |.||| |||| |||| .||| |.|.|
Sbjct 443 TTGCTCTTTGCAAGACTGAAC---CTGCGGGAGGGTTCGGGCCCACG--AAGGCCGCTTCT-GTGGGGCTTCTG 510
Query 811 TTGAAGAAGAATGACCAAATTTACGCCATGAAAGTGGTGAAGAAAGAGCTG-GTGCATGATGACGAGGATATTG 883
|..|||.|| ||| ||.| .||| ||||| ||
Sbjct 511 TCTAAGGAG---------------GCC--------------------GCCGTCTGC-------CGAGG----TG 538
Query 884 ACTGGGTACAGACAGAGAAGCACGTGTTTGAGCAGGCATCCAGCAAC-CCCTTCCTGGTCGGATTACACTCCTG 956
|||| || ||.|||.||..| |.||.|||| ||
Sbjct 539 ACTG----CA-------------------------GCCTCCGGCGCCTCTCTCCCTG---------CA------ 568
Query 957 CTTCCAGACGACAAGTCGGTTGTTCCTGGTCATTGAGTACGTCAACGGCGGGGACCTGATGTTCCACATGCAGA 1030
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 -----------------GGTTGTTCCTGGTCATTGAGTACGTCAACGGCGGGGACCTGATGTTCCACATGCAGA 625
Query 1031 GGCAGAGGAAGCTCCCTGAGGAGCACGCCAGGTTCTACGCGGCCGAGATCTGCATCGCCCTCAACTTCCTGCAC 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 626 GGCAGAGGAAGCTCCCTGAGGAGCACGCCAGGTTCTACGCGGCCGAGATCTGCATCGCCCTCAACTTCCTGCAC 699
Query 1105 GAGAGGGGGATCATCTACAGGGACCTGAAGCTGGACAACGTCCTCCTGGATGCGGACGGGCACATCAAGCTCAC 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 GAGAGGGGGATCATCTACAGGGACCTGAAGCTGGACAACGTCCTCCTGGATGCGGACGGGCACATCAAGCTCAC 773
Query 1179 AGACTACGGCATGTGCAAGGAAGGCCTGGGCCCTGGTGACACAACGAGCACTTTCTGCGGAACCCCGAATTACA 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 AGACTACGGCATGTGCAAGGAAGGCCTGGGCCCTGGTGACACAACGAGCACTTTCTGCGGAACCCCGAATTACA 847
Query 1253 TCGCCCCCGAAATCCTGCGGGGAGAGGAGTACGGGTTCAGCGTGGACTGGTGGGCGCTGGGAGTCCTCATGTTT 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 TCGCCCCCGAAATCCTGCGGGGAGAGGAGTACGGGTTCAGCGTGGACTGGTGGGCGCTGGGAGTCCTCATGTTT 921
Query 1327 GAGATGATGGCCGGGCGCTCCCCGTTCGACATCATCACCGACAACCCGGACATGAACACAGAGGACTACCTTTT 1400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 GAGATGATGGCCGGGCGCTCCCCGTTCGACATCATCACCGACAACCCGGACATGAACACAGAGGACTACCTTTT 995
Query 1401 CCAAGTGATCCTGGAGAAGCCCATCCGGATCCCCCGGTTCCTGTCCGTCAAAGCCTCCCATGTTTTAAAAGGAT 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 CCAAGTGATCCTGGAGAAGCCCATCCGGATCCCCCGGTTCCTGTCCGTCAAAGCCTCCCATGTTTTAAAAGGAT 1069
Query 1475 TTTTAAATAAGGACCCCAAAGAGAGGCTCGGCTGCCGGCCACAGACTGGATTTTCTGACATCAAGTCCCACGCG 1548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 TTTTAAATAAGGACCCCAAAGAGAGGCTCGGCTGCCGGCCACAGACTGGATTTTCTGACATCAAGTCCCACGCG 1143
Query 1549 TTCTTCCGCAGCATAGACTGGGACTTGCTGGAGAAGAAGCAGGCGCTCCCTCCATTCCAGCCA---CAGAT-CA 1618
|||||||||||||||||||||||||||.||.| |||.|| ||||| ||
Sbjct 1144 TTCTTCCGCAGCATAGACTGGGACTTGATGCA-------------------------CAGACAACTCAGATGCA 1192
Query 1619 CAGACGACTACGGTCTGGACAACTTTGACACACAGTTCACCAG-CGA---GCCCGTGCAGCTGAC-------CC 1681
||||| |.|.||||.||.|.||||| |||| ||| |..||..|||..||| |.
Sbjct 1193 CAGAC-------GCCCGGACGACGTGGACAC--------CCAGACGATGTGGACGCACAGACGACATGGACGCA 1251
Query 1682 CAGACGATGAGGATGC--------CATAAAGA---GGATCGA-----CCAGTCAGAGTTCGAAGGCTTTGAGT- 1738
|||||||||.|||||| |.||.|.| |||| || ||| |||| |||.|
Sbjct 1252 CAGACGATGTGGATGCACGGACGACGTAGACACACGGAT-GACTCATCCA--CAGA------------TGACTC 1310
Query 1739 ATAT-CA-----ACCCATTATTGCTGTC----------CACCGAGGAGTCGG---------TG----------- 1776
|.|| || ||||| |.| |||.||.||..||| ||
Sbjct 1311 AGATGCACGGACACCCA--------GACGACGCGGACGCACAGACGACGCGGACGCACAGATGACGTGGACGCA 1376
Query 1777 ---- 1776
Sbjct 1377 CAGA 1380
