Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14803
- Subject:
- NM_139049.4
- Aligned Length:
- 1553
- Identities:
- 939
- Gaps:
- 476
Alignment
Query 1 ATGGCTGACCTAATAGATGGGTACTGCCGGCTGGTGAATGGAACCTCGCAGTCATTTATCATCAGACCTCAGAA 74
||.|.|||| ||.|
Sbjct 1 ---------------------------------------------------------ATGAGCAGA----AGCA 13
Query 75 AG-GTGAGGTGC-----TGTTTCT------GAGCATTCCCAATT-GCGCTTCTACCAAATATTTAGCTGTGCTT 135
|| |||| | |.|||.| ||| ||| |.|.|||||| |||.| |.||
Sbjct 14 AGCGTGA----CAACAATTTTTATAGTGTAGAG--------ATTGGAGATTCTAC-----ATTCA-CAGT---- 65
Query 136 GCCCCT--AACAGCCTGTTATCCTCTTTTAGGTAACTGTAAAAATGAAGACCAAATGAATAATTCAGCTCAGTA 207
||| ||| |.|||| |.||.|.||.||| ||
Sbjct 66 ---CCTGAAAC-----GATATC-----------------AGAATTTAAAACC--------------------TA 94
Query 208 TAATCTGAGGA-CTTATTTTTCTAGGGATGGTGATCCGTTTCACACCTTCCACAAGCCAAGAGCTGGGTTTGAA 280
||..||.|||| | ||.|||.||.|| ||.|| ||.||| |.||
Sbjct 95 TAGGCTCAGGAGC-------TCAAGGAATAGT-ATGCG-----CAGCTT---------ATGA------------ 134
Query 281 TTGCCAACTTTCTTGTA--CAAAGTTGGCATTAT-AAGANAGCTNNG-------TTT--GAAT--------TGC 334
||||| ||||||.| .||.||| ||| || |||| ||||..| ||| |||| |||
Sbjct 135 -TGCCA---TTCTTGAAAGAAATGTT-GCA--ATCAAGA-AGCTAAGCCGACCATTTCAGAATCAGACTCATGC 200
Query 335 CAA------CT------------TNCTTNTACAANNTNNNGCAACGAACAGGTCACTATCNNTNANAANAAAAN 390
||| || |.|||.|..||..| ||.| ||| |.||.||.|.
Sbjct 201 CAAGCGGGCCTACAGAGAGCTAGTTCTTATGAAATGT--------------GTTA--ATC----ACAAAAATAT 254
Query 391 CATTG--CTTATCAATATTNNNNNNNCNGNNNANNTCNCTATCAGTATANNNANNNGTATTACANNNTCAT--A 460
.|||| |||.|.|||.||.......|. ...|..||.|||..||.||....|...|| |||||...|||| |
Sbjct 255 AATTGGCCTTTTGAATGTTTTCACACCA-CAGAAATCCCTAGAAGAATTTCAAGATGT-TTACATAGTCATGGA 326
Query 461 GCTGTTTCCTGGCAGCTCTGGCCCGTGTCTCAAAATNTNTGCTATCCAGNTGNTNCAAATCGAGGCGCC--GAA 532
|| ||.|||..|| ||||.|.|| |||..||.|.||.||.||| | ||.
Sbjct 327 GC----TCATGGATGC----------------AAATCTTTG----CCAAGTGATTCAGATGGAG----CTAGAT 372
Query 533 C---AAAAAAGCTCCTACTATTTTGTTAAAAAACCCAAGTCGTTCTATAGCTGTGGATGTGT---ATCTACCAC 600
| |||.||..||||| |.||||.||.|.|..|.||||| |||.|.|||
Sbjct 373 CATGAAAGAATGTCCTA-----------------------CCTTCTCTATCAGATGCTGTGTGGAATCAAGCAC 423
Query 601 CTCTTCATTCT-CGAGA---------CGGCAGAGCT----GCCC------------GCAAA--------GCACG 640
||||||||| |..|| |||.| || |||| |.||| ||||
Sbjct 424 --CTTCATTCTGCTGGAATTATTCATCGGGA---CTTAAAGCCCAGTAATATAGTAGTAAAATCTGATTGCAC- 491
Query 641 TTTTG----CTCTAGCACT--GATCT--------CTTCA--AATCATACAAAAGCTAT--TGACCTCTCTTGTT 696
|||| .|||.| ||| |.||| ||.|| | ||.|....||| ||||..||..|||.
Sbjct 492 -TTTGAAGATTCTTG-ACTTCGGTCTGGCCAGGACTGCAGGA-----ACGAGTTTTATGATGACGCCTTATGTA 558
Query 697 G--------TACTA-AG-----------------TTGGTAT--TATACACAGA----GTG--ATTATCATTTGT 736
| ||||| || ||||.|| ..||||..|| ||| .||||..|.|||
Sbjct 559 GTGACTCGCTACTACAGAGCACCCGAGGTCATCCTTGGCATGGGCTACAAGGAAAACGTGGATTTATGGTCTGT 632
Query 737 ----TGCTTCGTAGTGACCGTAGAGA-----------AAAATACACT---------------------ATTAGT 774
|||.| || || |.|||.| |||||.|.|| ||.|||
Sbjct 633 GGGGTGCAT--TA-TG---GGAGAAATGGTTTGCCACAAAATCCTCTTTCCAGGAAGGGACTATATTGATCAGT 700
Query 775 GTCCCCTGA----------TGATC-GCCCG----ACCAGAGAGTCATGAATCTATGGCAG-AACTCCTCCCAAC 832
| || |||.| ||..| |||| .|||.|||||..|| |.|| ||||.|..|||||
Sbjct 701 G------GAATAAAGTTATTGAACAGCTTGGAACACCA---TGTCCTGAATTCAT-GAAGAAACTGCAACCAAC 764
Query 833 AGTAAGGACTTACGTTGAAAACAGACCTAAATATGCTGGATATAGCTTTGAGAAACTCTTCCCTGATGTCCTTT 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 AGTAAGGACTTACGTTGAAAACAGACCTAAATATGCTGGATATAGCTTTGAGAAACTCTTCCCTGATGTCCTTT 838
Query 907 TCCCAGCTGACTCAGAACACAACAAACTTAAAGCCAGTCAGGCAAGGGATTTGTTATCCAAAATGCTGGTAATA 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TCCCAGCTGACTCAGAACACAACAAACTTAAAGCCAGTCAGGCAAGGGATTTGTTATCCAAAATGCTGGTAATA 912
Query 981 GATGCATCTAAAAGGATCTCTGTAGATGAAGCTCTCCAACACCCGTACATCAATGTCTGGTATGATCCTTCTGA 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 GATGCATCTAAAAGGATCTCTGTAGATGAAGCTCTCCAACACCCGTACATCAATGTCTGGTATGATCCTTCTGA 986
Query 1055 AGCAGAAGCTCCACCACCAAAGATCCCTGACAAGCAGTTAGATGAAAGGGAACACACAATAGAAGAGTGGAAAG 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 AGCAGAAGCTCCACCACCAAAGATCCCTGACAAGCAGTTAGATGAAAGGGAACACACAATAGAAGAGTGGAAAG 1060
Query 1129 AATTGATATATAAGGAAGTTATGGACTTGGAGGAGAGAACCAAGAATGGAGTTATACGGGGGCAGCCCTCTCCT 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 AATTGATATATAAGGAAGTTATGGACTTGGAGGAGAGAACCAAGAATGGAGTTATACGGGGGCAGCCCTCTCCT 1134
Query 1203 TTAGGTGCAGCAGTGATCAATGGCTCTCAGCATCCATCATCATCGTCGTCTGTCAATGATGTGTCTTCAATGTC 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 TTAGGTGCAGCAGTGATCAATGGCTCTCAGCATCCATCATCATCGTCGTCTGTCAATGATGTGTCTTCAATGTC 1208
Query 1277 AACAGATCCGACTTTGGCCTCTGATACAGACAGCAGTCTAGAAGCAGCAGCTGGGCCTCTGGGCTGCTGTAGA 1349
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 AACAGATCCGACTTTGGCCTCTGATACAGACAGCAGTCTAGAAGCAGCAGCTGGGCCTCTGGGCTGCTGTAGA 1281