Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14833
- Subject:
- NR_161458.1
- Aligned Length:
- 5625
- Identities:
- 1350
- Gaps:
- 4272
Alignment
Query 1 ----------------------------------------------------------------ATGAGGCGAC 10
||||||||||
Sbjct 1 GCACTGAGCCTAAGCAGCCGGTGATGGCGGCAGCGGCTGTGGTGGCTGCGGCGGGTCCGGGCCCATGAGGCGAC 74
Query 11 GAAGGAGGCGGGACGGCTTTTACCCAGCCCCGGACTTCCGAGACAGGGAAGCTGAGGACATGGCAGGAGTGTTT 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GAAGGAGGCGGGACGGCTTTTACCCAGCCCCGGACTTCCGAGACAGGGAAGCTGAGGACATGGCAGGAGTGTTT 148
Query 85 GACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGGGGTCAGTTAAATGAAAG 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCTGGAGGAGGGGGGTCAGTTAAATGAAAG 222
Query 159 CATGGACCATGGGGGAGTTGGACCATATGAACTTGGCATGGAACATTGTGAGAAATTTGAAATCTCAGAAACTA 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CATGGACCATGGGGGAGTTGGACCATATGAACTTGGCATGGAACATTGTGAGAAATTTGAAATCTCAGAAACTA 296
Query 233 GTGTGAACAGAGGGCCAGAAAAAATCAGACCAGAATGTTTTGAGCTACTTCGGGTACTTGGTAAAGGGGGCTAT 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GTGTGAACAGAGGGCCAGAAAAAATCAGACCAGAATGTTTTGAGCTACTTCGGGTACTTGGTAAAGGGGGCTAT 370
Query 307 GGAAAGGTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAAAATATTTGCCATGAAGGTGCTTAAAAA 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGAAAGGTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAAAATATTTGCCATGAAGGTGCTTAAAAA 444
Query 381 GGCAATGATAGTAAGAAATGCTAAAGATACAGCTCATACAAAAGCAGAACGGAATATTCTGGAGGAAGTAAAGC 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GGCAATGATAGTAAGAAATGCTAAAGATACAGCTCATACAAAAGCAGAACGGAATATTCTGGAGGAAGTAAAGC 518
Query 455 ATCCCTTCATCGTGGATTTAATTTATGCCTTTCAGACTGGTGGAAAACTCTACCTCATCCTTGAGTATCTCAGT 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ATCCCTTCATCGTGGATTTAATTTATGCCTTTCAGACTGGTGGAAAACTCTACCTCATCCTTGAGTATCTCAGT 592
Query 529 GGAGGAGAACTATTTATGCAGTTAGAAAGAGAGGGAATATTTATGGAAGACACTGCCTGCTTTTACTTGGCAGA 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GGAGGAGAACTATTTATGCAGTTAGAAAGAGAGGGAATATTTATGGAAGACACTGCCTGCTTTTACTTGGCAGA 666
Query 603 AATCTCCATGGCTTTGGGGCATTTACATCAAAAGGGGATCATCTACAGAGACCTGAAGCCGGAGAATATCATGC 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AATCTCCATGGCTTTGGGGCATTTACATCAAAAGGGGATCATCTACAGAGACCTGAAGCCGGAGAATATCATGC 740
Query 677 TTAATCACCAAGGTCATGTGAAACTAACAGACTTTGGACTATGCAAAGAATCTATTCATGATGGAACAGTCACA 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TTAATCACCAAGGTCATGTGAAACTAACAGACTTTGGACTATGCAAAGAATCTATTCATGATGGAACAGTCACA 814
Query 751 CACACATTTTGTGGAACAATAGAATACATGGCCCCTGAAATCTTGATGAGAAGTGGCCACAATCGTGCTGTGGA 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CACACATTTTGTGGAACAATAGAATACATGGCCCCTGAAATCTTGATGAGAAGTGGCCACAATCGTGCTGTGGA 888
Query 825 TTGGTGGAGTTTGGGAGCATTAATGTATGACATGCTGACTGGAGCACCCCCATTCACTGGGGAGAATAGAAAGA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TTGGTGGAGTTTGGGAGCATTAATGTATGACATGCTGACTGGAGCACCCCCATTCACTGGGGAGAATAGAAAGA 962
Query 899 AAACAATTGACAAAATCCTCAAATGTAAACTCAATTTGCCTCCCTACCTCACACAAGAAGCCAGAGATCTGCTT 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AAACAATTGACAAAATCCTCAAATGTAAACTCAATTTGCCTCCCTACCTCACACAAGAAGCCAGAGATCTGCTT 1036
Query 973 AAAAAGCTGCTGAAAAGAAATGCTGCTTCTCGTCTGGGAGCTGGTCCTGGGGACGCTGGAGAAGTTCAAGCTCA 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AAAAAGCTGCTGAAAAGAAATGCTGCTTCTCGTCTGGGAGCTGGTCCTGGGGACGCTGGAGAAGTTCAAGCTCA 1110
Query 1047 TCCATTCTTTAGACACATTAACTGGGAAGAACTTCTGGCTCGAAAGGTGGAGCCCCCCTTTAAACCTCTGTT-- 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TCCATTCTTTAGACACATTAACTGGGAAGAACTTCTGGCTCGAAAGGTGGAGCCCCCCTTTAAACCTCTGTTGG 1184
Query 1119 -------------------------------------------------------------------------- 1118
Sbjct 1185 TGCATCACCCGGATCTCTGCCTTCATGTTCACATGGTGTTCTACCTGTGTGCATATCTGTGGCCAAATTTCCCC 1258
Query 1119 -------------------------------------------------------------------------- 1118
Sbjct 1259 TTTTTATAAGGATACCAGGCATATTGGATTAGGGTTCCTCTCTACTCCAGTAGGACCTCATCTTCACTAATTAC 1332
Query 1119 -----------------------------------------------GCAATCTGAAGAGGATGTAAGTCAGTT 1145
|||||||||||||||||||||||||||
Sbjct 1333 ATCTGCAATAACCCTTTCCAAATAAGGTCACATTCTGAGGAACTAGAGCAATCTGAAGAGGATGTAAGTCAGTT 1406
Query 1146 TGATTCCAAGTTTACACGTCAGACACCTGTCGACAGCCCAGATGACTCAACTCTCAGTGAAAGTGCCAATCAGG 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TGATTCCAAGTTTACACGTCAGACACCTGTCGACAGCCCAGATGACTCAACTCTCAGTGAAAGTGCCAATCAGG 1480
Query 1220 TCTTTCTGGGTTTTACATATGTGGCTCCATCTGTACTTGAAAGTGTGAAAGAAAAGTTTTCCTTTGAACCAAAA 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TCTTTCTGGGTTTTACATATGTGGCTCCATCTGTACTTGAAAGTGTGAAAGAAAAGTTTTCCTTTGAACCAAAA 1554
Query 1294 ATCCGATCACCTCGAAGATTTATTGGCAGCCCACGAACACCTGTCAG------------TACTGCT-------- 1347
||||||||||||||||||||||||||||||||||||||||||||||| |.||.||
Sbjct 1555 ATCCGATCACCTCGAAGATTTATTGGCAGCCCACGAACACCTGTCAGCCCAGTCAAATTTTCTCCTGGGGATTT 1628
Query 1348 ---------ATGTGC----------------------------------------------------------- 1353
|.||||
Sbjct 1629 CTGGGGAAGAGGTGCTTCGGCCAGCACAGCAAATCCTCAGACACCTGTGGAATACCCAATGGAAACAAGTGGCA 1702
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1703 TAGAGCAGATGGATGTGACAATGAGTGGGGAAGCATCGGCACCACTTCCAATACGACAGCCGAACTCTGGGCCA 1776
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1777 TACAAAAAACAAGCTTTTCCCATGATCTCCAAACGGCCAGAGCACCTGCGTATGAATCTATGACAGAGCAATGC 1850
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1851 TTTTAATGAATTTAAGGCAAAAAAGGTGGAGAGGGAGATGTGTGAGCATCCTGCAAGGTGAAACGACTCAAAAT 1924
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1925 GACAGTTTCAGAGAGTCAATGTCATTACATAGAACACTTCAGACACAGGAAAAATAAACGTGGATTTTAAAAAA 1998
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1999 TCAATCAATGGTGCAAAAAAAAACTTAAAGCAAAATAGTATTGCTGAACTCTTAGGCACATCAATTAATTGATT 2072
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2073 CCTCGCGACATCTTCTCAACCTTATCAAGGATTTTCATGTTGATGACTCGAAACTGACAGTATTAAGGGTAGGA 2146
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2147 TGTTGCTTCTGAATCACTGTTGAGTTCTGATTGTGTTGAAGAAGGGTTATCCTTTCATTAGGCAAAGTACAAAA 2220
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2221 TTGCCTATAATACTTGCAACTAAGGACAAATTAGCATGCAAGCTTGGTCAAACTTTTTCCAGCAAAATGGAAGC 2294
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2295 AAAGACAAAAGAAACTTACCAATTGATGTTTTACGTGCAAACAACCTGAATCTTTTTTTTATATAAATATATAT 2368
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2369 TTTTCAAATAGATTTTTGATTCAGCTCATTATGAAAAACATCCCAAACTTTAAAATGCGAAATTATTGGTTGGT 2442
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2443 GTGAAGAAAGCCAGACAACTTCTGTTTCTTCTCTTGGTGAAATAATAAAATGCAAATGAATCATTGTTAACCAC 2516
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2517 AGCTGTGGCTCGTTTGAGGGATTGGGGTGGACCTGGGGTTTATTTTCAGTAACCCAGCTGCAATACCTGTCTGT 2590
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2591 AATATGAGAAAAAAAAAATGAATCTATTTAATCATTTCTACTTGCAGTACTGCTATGTGCTAAGCTTAACTGGA 2664
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2665 AGCCTTGGAATGGGCATAAGTTGTATGTCCTACATTTCATCATTGTCCCGGGCCTGCATTGCACTGGAAAAAAA 2738
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2739 AATCGCCACCTGTTCTTACACCAGTATTTGGTTCAAGACACCAAATGTCTTCAGCCCATGGCTGAAGAACAACA 2812
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2813 GAAGAGAGTCAGGATAAAAAATACATACTGTGGTCGGCAAGGTGAGGGAGATAGGGATATCCAGGGGAAGAGGG 2886
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2887 TGTTGCTGTGGCCCACTCTCTGTCTAATCTCTTTACAGCAAATTGGTAAGATTTTCAGTTTTACTTCTTTCTAC 2960
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2961 TGTTTCTGCTGTCTACCTTCCTTATATTTTTTTCCTCAACAGTTTTAAAAAGAAAAAAAGGTCTATTTTTTTTT 3034
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3035 CTCCTATACTTGGGCTACATTTTTTGATTGTAAAAATATTTGATGGCCTTTTGATGAATGTCTTCCACAGTAAA 3108
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3109 GAAAACTTAGTGGCTTAATTTAGGAAACATGTTAACAGGACACTATGTTTTTGAAATTGTAACAAAATCTACAT 3182
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3183 AAATGATTTACAGGTTAAAAGAATAAAAATAAAGGTAACTTTACCTTTCTTAAATATTTCCTGCCTTAAAGAGA 3256
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3257 GCATTTCCATGACTTTAGCTGGTGAAAGGGTTTAATATCTGCAGAGCTTTATAAAAATATATTTCAGTGCATAC 3330
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3331 TGGTATAATAGATGATCATGCAGTTGCAGTTGAGTTGTATCACCTTTTTTGTTTGTCTTTTATAATGTCTTCAG 3404
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3405 TCTGAGTGTGCAAAGTCAATTTGTAATATTTTGCAACCCTAGGATTTTTTTAAATAGATGCTGCTTGCTATGTT 3478
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3479 TTCAAACCTTTTTGAGCCATAGGATCCAAGCCATAAAATTCTTTATGCATGTTGAATTCAGTCAGAAAAGAGCA 3552
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3553 AGGCTTTGCTTTTTGAAATTGCAACTCAAATGAGATGGGATGAAATCCTATGACAGTAAGCAAAAACAGAACCA 3626
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3627 TGAAAAATGATTGGACATACACCTTTTCAATTGTGGCAATAATTGAAAGAATCGATAAAAGTTCATCTTTGGAC 3700
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3701 AGAAAGCCTTTAAAAAAAAAATCACTCCCTCTTCCCCCTCCTCCCTTATTGCAGCAGCCTACTGAGAACTTTGA 3774
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3775 CTGTTGCTGGTAAATTAGAAGCTACAATAATAATTAAGGGCAGAAATTATACTTAAAAAGTGCAGATCCTTGTT 3848
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3849 CTTTGACAATTTGTGATGTCTGAAAAAACAGAACCCGAAAAGCTATGGTGATATGTACAGGCATTATTTCAGAC 3922
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3923 TGTAAATGGCTTGTGATACTCTTGATACTTGTTTTCAAATATGTTTACTAACTGTAGTGTTGACTGCCTGACCA 3996
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3997 AATTCCAGTGAAACTTATACACCAAAATATTCTTCCTAGGTCCTATTTGCTAGTAACATGAGCACTGTGATTGG 4070
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4071 CTGGCTATAACCACCCCAGTTAAACCATTTTCATAATTAGTAGTGCCAGCAATAGTGGCAAACACTGCAACTTT 4144
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4145 TCTGCATAAAAAGCATTAATTGCACAGCTACCATCCACACAAATACATAGTTTTTCTGACTTCACATTTATTAA 4218
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4219 GTGAAATTTATTTCCCATGCTGTGGAAAGTTTATTGAGAACTTGTTTCATAAATGGATATCCCTACTATGACTG 4292
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4293 TGAAAACATGTCAAGTGTCACATTAGTGTCACAGACAGAAAGCACACACCTATGCAATATGGCTTATCTATATT 4366
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4367 TATTTGTAAAAATCCAAGCATAGTTTAAAATATGATGTCGATATTACTAGTCTTGAGTTTCTAAGAGGGTTCTT 4440
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4441 TATGTTATACCAGGTAAGTGTATAAAAGAGATTAAGTGCTTTTTTTTCATCACTTGATTATTTTCTTTAAAATC 4514
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4515 AGCTATTACAGGATATTTTTTTATTTTATACATGCTGTTTTTTAATTAAAATATAATCACTGAAGTTTACTAAT 4588
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4589 TTGATTTTATAAGGTTTGTAGCATTACAGAATAACTAAACTGGGATTTATAAACCAGCTGTGATTAACAATGTA 4662
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4663 AAGTATTAATTATTGAACTTTGAACCAGATTTTTAGGAAAATTATGTTCTTTTTCCCCCTTTATGGTCTTAACT 4736
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4737 AATTTGAATCCTTCAAGAAGGATTTTTCCATACTATTTTTTAAGATAGAAGATAATTTGTGGGCAGGGGTGGAG 4810
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4811 GATGCATGTATGATACTCCATAAATTCAACATTCTTTACTATAGGTAATGAATGATTATAAACAAGATGCATCT 4884
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4885 TAGATAGTATTAATATACTGAGCCTTGGATTATATATTTAATATAGGACCTATTTTGAATATTCAGTTAATCAT 4958
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4959 ATGGTTCCTAGCTTACAAGGGCTAGATCTAAGATTATTCCCATGAGAAATGTTGAATTTATGAAGAATAGATTT 5032
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5033 TAAGGCTTTGAAAATGGTTAATTTCTCAAAAACATCAATGTCCAAACATCTACCTTTTTTCATAGGAGTAGACA 5106
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5107 CTAGCAAGCTGGACAAACTATCACAAAAGTATTTGTCACACATAACCTGTGGTCTGTTGCTGATTAATACAGTA 5180
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5181 CTTTTTCTTGTGTGATTCTTAACATTATAGCACAAGTATTATCTCAGTGGATTATCCGGAATAACATCTGAAAG 5254
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5255 ATGGGTTCATCTATGTTTGTGTTTGCTCTTTAAACTATTGTTTCTCCTATCCCAAGTTCGCTTTGCATCTATCA 5328
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5329 GTAAATAAAATTCTTCAGCTGCCTTATTAGGAGTGCTATGAGGGTAACACCTGTTCTGCTTTTCATCTTGTATT 5402
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5403 TAGTTGACTGTATTATTTGATTTCGGATTGAATGAATGTAAATAGAAATTAAATGCAAATTTGAATGAACATAA 5476
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5477 ATAGAAGTGATTTATTTTTTTATTATCTTAAAGATAGGAAGGAATTAGTATACGTATCAGGTGTATAAATGGTT 5550
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5551 TAAATTTATTTTAACATGTCAGATGTGTTCAAGTTGTCATATAAATAAACTATGTATGTAAGGAATGGGTTAAA 5624
Query 1354 - 1353
Sbjct 5625 A 5625
