Construct: ORF ccsbBroadEn_14833

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005343.2_s300c1, BRDN0000458418
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RPS6KB1 (6198)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6198 RPS6KB1 ribosomal protein S6 kinase B1 NM_001272043.2 100% 100%
2 human 6198 RPS6KB1 ribosomal protein S6 kinase B1 NM_003161.4 85.7% 85.1% (many diffs)
3 human 6198 RPS6KB1 ribosomal protein S6 kinase B1 XM_011525102.3 84.5% 84.2% (many diffs)
4 human 6198 RPS6KB1 ribosomal protein S6 kinase B1 NM_001272042.1 81.3% 80.7% (many diffs)
5 human 6198 RPS6KB1 ribosomal protein S6 kinase B1 NM_001272060.1 81.3% 80.7% (many diffs)
6 human 6198 RPS6KB1 ribosomal protein S6 kinase B1 NM_001369669.1 78.8% 78.2% (many diffs)
7 human 6198 RPS6KB1 ribosomal protein S6 kinase B1 NM_001272044.1 75.6% 75% (many diffs)
8 human 6198 RPS6KB1 ribosomal protein S6 kinase B1 NM_001369670.1 71.6% 71% (many diffs)
9 human 6198 RPS6KB1 ribosomal protein S6 kinase B1 NM_001369671.1 70.4% 69.9% (many diffs)
10 human 6198 RPS6KB1 ribosomal protein S6 kinase B1 NM_001369672.1 68.7% 68.1% (many diffs)
11 human 6198 RPS6KB1 ribosomal protein S6 kinase B1 NM_001369674.1 46.3% 42.3% (many diffs)
12 human 6198 RPS6KB1 ribosomal protein S6 kinase B1 NM_001369675.1 46.3% 42.3% (many diffs)
13 human 6198 RPS6KB1 ribosomal protein S6 kinase B1 NM_001369676.1 44.9% 42.5% (many diffs)
14 human 6198 RPS6KB1 ribosomal protein S6 kinase B1 NM_001369677.1 44.9% 42.5% (many diffs)
15 human 6198 RPS6KB1 ribosomal protein S6 kinase B1 NM_001369678.1 44.9% 42.5% (many diffs)
16 human 6198 RPS6KB1 ribosomal protein S6 kinase B1 NM_001369679.1 44.9% 42.5% (many diffs)
17 human 100287072 LOC100287072 ribosomal protein S6 kinase... NR_073509.1 34.8% (many diffs)
18 human 6198 RPS6KB1 ribosomal protein S6 kinase B1 NM_001369673.1 33.2% 31% (many diffs)
19 human 6198 RPS6KB1 ribosomal protein S6 kinase B1 NR_161461.1 24.8% (many diffs)
20 human 6198 RPS6KB1 ribosomal protein S6 kinase B1 NR_161456.1 24.8% (many diffs)
21 human 6198 RPS6KB1 ribosomal protein S6 kinase B1 NR_161459.1 24.4% (many diffs)
22 human 6198 RPS6KB1 ribosomal protein S6 kinase B1 NR_161458.1 24% (many diffs)
23 human 6198 RPS6KB1 ribosomal protein S6 kinase B1 NR_161460.1 23.5% (many diffs)
24 human 6198 RPS6KB1 ribosomal protein S6 kinase B1 NR_161457.1 23% (many diffs)
25 human 6198 RPS6KB1 ribosomal protein S6 kinase B1 NR_161462.1 22.8% (many diffs)
26 human 6198 RPS6KB1 ribosomal protein S6 kinase B1 NR_161455.1 22.1% (many diffs)
27 human 6198 RPS6KB1 ribosomal protein S6 kinase B1 XR_002958051.1 17.5% (many diffs)
28 mouse 72508 Rps6kb1 ribosomal protein S6 kinase... XM_011249275.2 94.4% 98.6% (many diffs)
29 mouse 72508 Rps6kb1 ribosomal protein S6 kinase... XM_011249276.2 89.6% 91.1% (many diffs)
30 mouse 72508 Rps6kb1 ribosomal protein S6 kinase... NM_001114334.1 81.3% 84.7% (many diffs)
31 mouse 72508 Rps6kb1 ribosomal protein S6 kinase... XM_006534314.3 71.8% 75% (many diffs)
32 mouse 72508 Rps6kb1 ribosomal protein S6 kinase... XM_006534315.3 66.2% 69.5% (many diffs)
33 mouse 72508 Rps6kb1 ribosomal protein S6 kinase... XM_017314791.1 55.3% 39.8% (many diffs)
34 mouse 72508 Rps6kb1 ribosomal protein S6 kinase... XM_017314792.1 47% 40.2% (many diffs)
35 mouse 72508 Rps6kb1 ribosomal protein S6 kinase... XM_006534317.2 44.9% 46.4% (many diffs)
36 mouse 72508 Rps6kb1 ribosomal protein S6 kinase... XM_011249277.2 44.9% 46.4% (many diffs)
37 mouse 72508 Rps6kb1 ribosomal protein S6 kinase... XM_017314793.1 42.5% 42.7% (many diffs)
38 mouse 72508 Rps6kb1 ribosomal protein S6 kinase... XR_879743.2 28.9% (many diffs)
39 mouse 72508 Rps6kb1 ribosomal protein S6 kinase... XR_001780060.1 23.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1419
ORF length:
1353
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61ttggcatgag gcgacgaagg aggcgggacg gcttttaccc agccccggac ttccgagaca
121gggaagctga ggacatggca ggagtgtttg acatagacct ggaccagcca gaggacgcgg
181gctctgagga tgagctggag gaggggggtc agttaaatga aagcatggac catgggggag
241ttggaccata tgaacttggc atggaacatt gtgagaaatt tgaaatctca gaaactagtg
301tgaacagagg gccagaaaaa atcagaccag aatgttttga gctacttcgg gtacttggta
361aagggggcta tggaaaggtt tttcaagtac gaaaagtaac aggagcaaat actgggaaaa
421tatttgccat gaaggtgctt aaaaaggcaa tgatagtaag aaatgctaaa gatacagctc
481atacaaaagc agaacggaat attctggagg aagtaaagca tcccttcatc gtggatttaa
541tttatgcctt tcagactggt ggaaaactct acctcatcct tgagtatctc agtggaggag
601aactatttat gcagttagaa agagagggaa tatttatgga agacactgcc tgcttttact
661tggcagaaat ctccatggct ttggggcatt tacatcaaaa ggggatcatc tacagagacc
721tgaagccgga gaatatcatg cttaatcacc aaggtcatgt gaaactaaca gactttggac
781tatgcaaaga atctattcat gatggaacag tcacacacac attttgtgga acaatagaat
841acatggcccc tgaaatcttg atgagaagtg gccacaatcg tgctgtggat tggtggagtt
901tgggagcatt aatgtatgac atgctgactg gagcaccccc attcactggg gagaatagaa
961agaaaacaat tgacaaaatc ctcaaatgta aactcaattt gcctccctac ctcacacaag
1021aagccagaga tctgcttaaa aagctgctga aaagaaatgc tgcttctcgt ctgggagctg
1081gtcctgggga cgctggagaa gttcaagctc atccattctt tagacacatt aactgggaag
1141aacttctggc tcgaaaggtg gagcccccct ttaaacctct gttgcaatct gaagaggatg
1201taagtcagtt tgattccaag tttacacgtc agacacctgt cgacagccca gatgactcaa
1261ctctcagtga aagtgccaat caggtctttc tgggttttac atatgtggct ccatctgtac
1321ttgaaagtgt gaaagaaaag ttttcctttg aaccaaaaat ccgatcacct cgaagattta
1381ttggcagccc acgaacacct gtcagtactg ctatgtgcta cccaactttc ttgtacaaag
1441ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)