Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_14849
Subject:
NM_003157.6
Aligned Length:
2528
Identities:
2216
Gaps:
299

Alignment

Query    1  ATGCCCCTGGCCGCCTACTGCTACCTGCGGGTCGTGGGCAAGGGGAGCTATGGAGAGGTGACGCTTGTGAAGCA  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGCCCCTGGCCGCCTACTGCTACCTGCGGGTCGTGGGCAAGGGGAGCTATGGAGAGGTGACGCTTGTGAAGCA  74

Query   75  CCGGCGGGACGGCAAGCAGTATGTCATCAAAAAACTGAACCTCCGAAATGCCTCTAGCCGAGAGCGGCGAGCTG  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CCGGCGGGACGGCAAGCAGTATGTCATCAAAAAACTGAACCTCCGAAATGCCTCTAGCCGAGAGCGGCGAGCTG  148

Query  149  CTGAACAGGAAGCCCAGCTCTTGTCTCAGTTGAAGCATCCCAACATTGTCACCTACAAGGAGTCATGGGAAGGA  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CTGAACAGGAAGCCCAGCTCTTGTCTCAGTTGAAGCATCCCAACATTGTCACCTACAAGGAGTCATGGGAAGGA  222

Query  223  GGAGATGGTCTGCTCTACATTGTCATGGGCTTCTGTGAAGGAGGTGATTTGTACCGAAAGCTCAAGGAGCAGAA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GGAGATGGTCTGCTCTACATTGTCATGGGCTTCTGTGAAGGAGGTGATTTGTACCGAAAGCTCAAGGAGCAGAA  296

Query  297  AGGGCAGCTTCTGCCGGAGAATCAGGTGGTAGAGTGGTTTGTACAGATCGCCATGGCTTTGCAGTATTTACATG  370
            |||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  AGGGCAGCTTCTGCCTGAGAATCAGGTGGTAGAGTGGTTTGTACAGATCGCCATGGCTTTGCAGTATTTACATG  370

Query  371  AAAAACACATCCTTCATCGAGATCTGAAAACTCAAAATGTCTTCCTAACAAGAACAAACATCATCAAAGTAGGG  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AAAAACACATCCTTCATCGAGATCTGAAAACTCAAAATGTCTTCCTAACAAGAACAAACATCATCAAAGTAGGG  444

Query  445  GACCTAGGAATTGCCCGAGTGTTGGAGAACCACTGTGACATGGCTAGCACCCTCATTGGCACACCCTACTACAT  518
            |||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GACCTAGGAATTGCCCGAGTGTTAGAGAACCACTGTGACATGGCTAGCACCCTCATTGGCACACCCTACTACAT  518

Query  519  GAGCCCTGAATTGTTCTCAAACAAACCCTACAACTATAAGTCTGATGTTTGGGCTCTAGGATGCTGTGTCTATG  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GAGCCCTGAATTGTTCTCAAACAAACCCTACAACTATAAGTCTGATGTTTGGGCTCTAGGATGCTGTGTCTATG  592

Query  593  AAATGGCCACCTTGAAGCATGCTTTCAATGCAAAAGATATGAATTCTTTAGTTTATCGGATTATTGAAGGAAAG  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AAATGGCCACCTTGAAGCATGCTTTCAATGCAAAAGATATGAATTCTTTAGTTTATCGGATTATTGAAGGAAAG  666

Query  667  CTGCCAGCAATGCCAAGAGATTACAGCCCAGAGCTGGCAGGACCTGATAAGAACAATGCTGAGCAAAAGGCCTG  740
            ||||||.|||||||||||||||||||||||||||||||| ||.|||||||||||||||||||||||||||||||
Sbjct  667  CTGCCACCAATGCCAAGAGATTACAGCCCAGAGCTGGCA-GAACTGATAAGAACAATGCTGAGCAAAAGGCCTG  739

Query  741  AAGAAAGGCCGTCTGTGAGGAGCATCCTGAGGCAGCCTTATATAAAGCGGCAAATCTCCTTCTTTTTGGAGGCC  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  740  AAGAAAGGCCGTCTGTGAGGAGCATCCTGAGGCAGCCTTATATAAAGCGGCAAATCTCCTTCTTTTTGGAGGCC  813

Query  815  ACAAAGATAAAAACCTCCAAAAATAACATTAAAAATGGTGACTCTCAATCCAAGCCTTTTGCTACAGTGGTTTC  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  814  ACAAAGATAAAAACCTCCAAAAATAACATTAAAAATGGTGACTCTCAATCCAAGCCTTTTGCTACAGTGGTTTC  887

Query  889  TGGAGAGGCAGAATCAAATCATGAAGTAATCCACCCCCAACCACTCTCTTCTGAGGGCTCCCAGACATATATAA  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  888  TGGAGAGGCAGAATCAAATCATGAAGTAATCCACCCCCAACCACTCTCTTCTGAGGGCTCCCAGACATATATAA  961

Query  963  TGGGTGAAGGCAAATGTTTGTCCCAGGAGAAACCCAGGGCCTCTGGTCTCTTGAAGTCACCTGCCAGTCTGAAA  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  962  TGGGTGAAGGCAAATGTTTGTCCCAGGAGAAACCCAGGGCCTCTGGTCTCTTGAAGTCACCTGCCAGTCTGAAA  1035

Query 1037  GCCCATACCTGCAAACAGGACTTGAGCAATACCACAGAACTAGCCACAATCAGTAGCGTAAATATTGACATCTT  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036  GCCCATACCTGCAAACAGGACTTGAGCAATACCACAGAACTAGCCACAATCAGTAGCGTAAATATTGACATCTT  1109

Query 1111  ACCTGCAAAAGGGAGGGATTCAGTGAGTGATGGCTTTGTTCAGGAGAATCAGCCAAGATATTTGGATGCCTCTA  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110  ACCTGCAAAAGGGAGGGATTCAGTGAGTGATGGCTTTGTTCAGGAGAATCAGCCAAGATATTTGGATGCCTCTA  1183

Query 1185  ATGAGTTAGGAGGTATATGCAGTATTTCTCAAGTGGAAGAGGAGATGCTGCAGGACAACACTAAATCCAGTGCC  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184  ATGAGTTAGGAGGTATATGCAGTATTTCTCAAGTGGAAGAGGAGATGCTGCAGGACAACACTAAATCCAGTGCC  1257

Query 1259  CAGCCTGAAAACCTGATTCCCATGTGGTCCTCTGACATTGTCACTGGGGAAAAGAATGAACCAGTGAAGCCTCT  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258  CAGCCTGAAAACCTGATTCCCATGTGGTCCTCTGACATTGTCACTGGGGAAAAGAATGAACCAGTGAAGCCTCT  1331

Query 1333  GCAGCCCCTAATCAAAGAACAAAAGCCAAAGGA-----------------------------------------  1365
            |||||||||||||||||||||||||||||||||                                         
Sbjct 1332  GCAGCCCCTAATCAAAGAACAAAAGCCAAAGGACCAGAGTCTTGCCCTGTCGCCCAAGCTGGAGTGCAGTGGCA  1405

Query 1366  --------------------------------------------------------------------------  1365
                                                                                      
Sbjct 1406  CAATCTTGGCTCACAGCAACCTCCGCCTCCTGGGTTCAAGTGATTCTCCAGCCTCAGCCTCCCGAGTAGCTGGG  1479

Query 1366  -----------------------CCAGGATCAAGTTGCTGGTGAATGTATTATAGAAAAACAGGGCAGAATCCA  1416
                                   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480  ATTACAGGCGTGTGCCACCACGCCCAGGATCAAGTTGCTGGTGAATGTATTATAGAAAAACAGGGCAGAATCCA  1553

Query 1417  CCCAGATTTACAGCCACACAACTCTGGGTCTGAACCTTCCCTGTCTCGACAGCGACGGCAAAAGAGGAGAGAAC  1490
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554  CCCAGATTTACAGCCACACAACTCTGGGTCTGAACCTTCCCTGTCTCGACAGCGACGGCAAAAGAGGAGAGAAC  1627

Query 1491  AGACTGAGCACAGAGGGGAAAAGAGACAGGTCCGCAGAGATCTCTTTGCTTTCCAAGAGTCGCCTCCTCGATTT  1564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1628  AGACTGAGCACAGAGGGGAAAAGAGACAGGTCCGCAGAGATCTCTTTGCTTTCCAAGAGTCGCCTCCTCGATTT  1701

Query 1565  TTGCCTTCTCATCCCATTGTTGGGAAAGTGGATGTCACATCAACACAAAAAGAGGCTGAAAACCAACGTAGAGT  1638
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1702  TTGCCTTCTCATCCCATTGTTGGGAAAGTGGATGTCACATCAACACAAAAAGAGGCTGAAAACCAACGTAGAGT  1775

Query 1639  GGTCACTGGGTCTGTGAGCAGTTCAAGGAGCAGTGAGATGTCATCATCAAAGGATCGACCATTATCAGCCAGAG  1712
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1776  GGTCACTGGGTCTGTGAGCAGTTCAAGGAGCAGTGAGATGTCATCATCAAAGGATCGACCATTATCAGCCAGAG  1849

Query 1713  AGAGGAGGCGACTAAAGCAGTCACAGGAAGAAATGTCCTCT---------------------------------  1753
            |||||||||||||||||||||||||||||||||||||||||                                 
Sbjct 1850  AGAGGAGGCGACTAAAGCAGTCACAGGAAGAAATGTCCTCTTCAGGCCCTTCAGTGAGGAAAGCGTCTCTGAGT  1923

Query 1754  --------------------------------------------------------------------------  1753
                                                                                      
Sbjct 1924  GTAGCAGGGCCAGGAAAACCCCAGGAAGAAGACCAGCCCTTGCCTGCCCGACGGCTCTCCTCTGACTGCAGCGT  1997

Query 1754  ---TCAGGAAAGGAAACAGATTCATTGTCTGTCTGAGGATGAGTTAAGTTCTTCTACAAGTTCAACTGATAAGT  1824
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1998  CACTCAGGAAAGGAAACAGATTCATTGTCTGTCTGAGGATGAGTTAAGTTCTTCTACAAGTTCAACTGATAAGT  2071

Query 1825  CAGATGGGGATTACGGGGAAGGGAAAGGTCAGACAAATGAAATTAATGCCTTGGTACAATTGATGACTCAGACC  1898
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2072  CAGATGGGGATTACGGGGAAGGGAAAGGTCAGACAAATGAAATTAATGCCTTGGTACAATTGATGACTCAGACC  2145

Query 1899  CTGAAACTGGATTCTAAAGAGAGCTGTGAAGATGTCCCGGTAGCAAACCCAGTGTCAGAATTCAAACTTCATCG  1972
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2146  CTGAAACTGGATTCTAAAGAGAGCTGTGAAGATGTCCCGGTAGCAAACCCAGTGTCAGAATTCAAACTTCATCG  2219

Query 1973  GAAATATCGGGACACACTGATACTTCATGGGAAGGTTGCAGAAGAGGCAGAGGAAATCCATTTTAAAGAGCTAC  2046
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2220  GAAATATCGGGACACACTGATACTTCATGGGAAGGTTGCAGAAGAGGCAGAGGAAATCCATTTTAAAGAGCTAC  2293

Query 2047  CTTCAGCTATTATGCCAGGTTCTGAAAAGATCAGGAGACTAGTTGAAGTCTTGAGAACTGATGTAATTCGTGGC  2120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2294  CTTCAGCTATTATGCCAGGTTCTGAAAAGATCAGGAGACTAGTTGAAGTCTTGAGAACTGATGTAATTCGTGGC  2367

Query 2121  CTGGGAGTTCAGCTTTTAGAGCAGGTGTATGATCTTTTGGAGGAGGAGGATGAATTTGATAGAGAGGTGAGTGT  2194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||..||.|
Sbjct 2368  CTGGGAGTTCAGCTTTTAGAGCAGGTGTATGATCTTTTGGAGGAGGAGGATGAATTTGATAGAGAGGTACGTTT  2441

Query 2195  -------CTCA----TTAACTGTAT-CAAGATGCTTA---TGTTATAG------------AATTTTT-------  2234
                   |.||    |.||..|||| |||    ||||   |||.|.||            |||||||       
Sbjct 2442  GCGGGAGCACATGGGTGAAAAGTATACAA----CTTACAGTGTGAAAGCTCGCCAGTTGAAATTTTTTGAAGAA  2511

Query 2235  ------------  2234
                        
Sbjct 2512  AACATGAATTTT  2523

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