Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14912
- Subject:
- XR_001782391.1
- Aligned Length:
- 5682
- Identities:
- 1310
- Gaps:
- 4193
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GACTGTTTTCTCTCAGCTGAGCACCACCGGGCTCTTCAGCAGAGGGAAAGCAGAAGCTGCAGGAAGCCCTTACT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGTCATGCTTCCTTTGTTCCATAATTAAATAGGCACGACCCCATTCAAAGACTCCATTACATCTTACAGGTCTA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AATGCTGTCATTGGTATCCCACTGTGGGGAGCCGAGGAAAGCTTGAATGAATGTGTAAAAAATGAAGTTCTGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGGGCATGGTGGCGCATGCCTTTAATCCTAGCACTTGGGAGGAAGAGGCAGAGGCAGGTGGATTTCTGAGTTCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAGAAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAAAGAAACAAACAACAACAACAACAACAACAAAAAAAAAGAATGAAGTTCTGGGGGCTGGAGAGATGGCTCAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGAAACCATATGGTGACTCACAACCA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TCCATAATGAGATTTGACCCCCTCTTATGTATCTGAAGACAGCTACAGTACTCATGTACATAAACTAAATAAAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTAAAAAAAAAATGAAGTTCTAAGTGAATGTGTGTAGTTGACATGGGTGCATCCATGTCAAGGGCTGAAGGCCT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGGACCCATGGGAGTGGCCGTGCCTTCCCTGTATGGGTCAGGCTTGGAACTGGTAAACGCTAAACCCTTCTTGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GGTCCAAGGAAGAGTGTTTTCAAATAATTGATGAGGACATACAAAAGCTAGCAATTGAAGCTTCTCCTCCCAGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGACTGCAACTGGAGACTGCTCCACCTACACCTGCTGTGCACAACAGTGTGCTGAGATTTTAAGCTGTTGCATA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GTAGATACACTCCACCAGAGCTGGCATAACCTACTTGGTGCCAGTTTTTCTGGACATTGTATCTGCATATCTGT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CTTTTCTTTTTTCCCTAGGCACCACAGTCAGGTTTTAAAGACCGATGGCTACAGTAAGCAACACATACCCACTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TATTCAGATTTGAAAATATATAGTTACTTATTTAAGGTGGGTCTCTCTATGTAGTCTTCACTGGCCCGAAACTT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GATATGTAGACCAAGCTGACCTCCAACTCAGATTCATGTGCCTCTGCCTCTGGAGTGTTGGGATCCAAGGTGTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CGCCACCTCATTTGGTCAAAGATTGTACATATTTTAAGTGTCTGCCTGACATTTTAGGAGTCTGTAGTTGGCAA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CATCAGGCAAACACCTTAACTACTGGATCCCTTATCCCGTGGCCTGATTCTTTGTCTTGGTTCTGTTAGCATCT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CATCCTCCTCTCACTTTTACTTCACTGTGGTTTCCTTTTATTCAAGAATATACTGCATTTGCTCATCCTAAACC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TCTTACGTAATGCACTACCAACATCTGTACCCCAACCCCAAACTAACATCTTGGAAATAAAAGAAAGATCCGAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTGGAATACACAGTCACCTGACAGAAACCTTTTAAAATTCTCATGCCTTGAAATTACACAGATGGCAACACATT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CAAAACATGTGTCAAGGCAAGTCTCTGCAACCCTCCCTGACTGTCAGGATAGGATTGCAGTGGGTAAGCCACTG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CAATCACCCAGCAGACAGCTGTCAGAAATATCTTTCTGGTATGCAAACTAGAAGCATCATACTCTGCTTTTAAT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GCCATCTCAGCTCTTGCTATTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTGGTCATAACAACCAGCTCTGAGGT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TGTTGTTGTTTTTTAATTTTAGCTCTTGTGATTTGATCCGAACAACCCCCACAAAGCTCATGTGTTAAAATGCT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AGGCGGCCAGCTGGAGGGGCCATTTAATGTCCAAATTGAGTTACTTTCTTCTATGTACCTGTTTCATTTTCAGG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AACGGATGGAATCTTCTCCTCAACATCATTTTTGAGATTAAACCCCGACTAGTGCTTGGATATAGTGATGTATA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ATGCTTATGCTTTTCCAGTCATTATATAAATTTCCCAATAAAATAGAGAATCACCCATTTTATTGCGCCGTCTT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 ATTTTTCGCTCAGTATTAGGCCACATATTCAGCAGCTTTTCTCATTCCACACCTGCCCTCAGATGACACTTAAC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CCAGTCGCAATCTGTATCACTATCACTTTCCCCTCTTTAAAGATGCCAGTTCTGCCGCCGCCGCCCCTTCCGCC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AATCCGTCCGGGTTTCGAATTACCCCGGGAAATAATGATCAGAGACAGCCAGGCTTAAGCATTCGGAGGCCACA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CTTGAATTAATTAGATTCGGTGACTGGGAAGAAGGAACCGGAAGGCGGTGCCTGCACAGGGAGTGCCCGCTGAG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AGAAAGCCAAACCCAGCCCTGCCTTGCCAGGAGCTCGTCAACAACCCTTGCCAGAAAACCTTTGAATCGGAAGC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GCAGAGACCGGAAGTACAGCCCTCCTGGGTTATGAACAGCCAATCAGAAGTGAGATCCTTAGTATACAGGGCGG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AAAAGAAGTGGTCCAGTTCCGGCCGCGGCCGCCGCCGCCGCCGCCGCCATCTGTCACCTCACCTCCGGCACCGG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CAGCGGGTTGCCCGTGCCCCGCCCGTGTCCTCGGCGGAGCCCTTTCTTCCTCTTGTCACCTCTCGACTCTGTTC 2664
Query 1 ----------------------ATGGATCTGGTAGGAGTGGCATCGCCTGAGCCCGGGACGGCAGCGGCCTGGG 52
|||||||||||.||||||.|.|||||||||||.|||.|.|||||.||.||||
Sbjct 2665 TCGTCTCTGCCTTCTTCCCGGAATGGATCTGGTCGGAGTGTCTTCGCCTGAGCCAGGGCCCGCAGCAGCTTGGG 2738
Query 53 GACCCAGCAAGTGTCCATGGGCTATTCCTCAAAATACAATATCTTGTTCTTTGGCTGATGTAATGAGTGAACAG 126
|||||||.|||||.||||||||||..||||||||.|||.||||.|||||..||.|.||.||.||||||||..||
Sbjct 2739 GACCCAGTAAGTGCCCATGGGCTACCCCTCAAAACACAGTATCCTGTTCACTGACCGAGGTGATGAGTGAGGAG 2812
Query 127 CTGGCCAAAGAATTGCAGTTAGAAGAAGAAGCTGCCGTTTTTCCTGAAGTTGCTGTTGCTGAAGGACCATTTAT 200
|||||.|||||..|||||||.|||||||||||.||.|.|||.||||||||||.||||||||||||||||||.||
Sbjct 2813 CTGGCTAAAGAGCTGCAGTTGGAAGAAGAAGCGGCTGCTTTCCCTGAAGTTGTTGTTGCTGAAGGACCATTCAT 2886
Query 201 TACTGGAGAAAACATTGATACTTCCAGTGACCTTATGCTGGCTCAGATGCTACAGATGGAATATGACAGAGAAT 274
|.||||||||||||||||.||||||||||||||.||||||||||||||||||||||||||||.|||||||||||
Sbjct 2887 TTCTGGAGAAAACATTGACACTTCCAGTGACCTAATGCTGGCTCAGATGCTACAGATGGAATTTGACAGAGAAT 2960
Query 275 ATGATGCACAGCTTAGGCGTGAAGAAAAAAAATTCAATGGAGATAGCAAAGTTTCCATTTCCTTTGAAAATTAT 348
||||||||||||||||||||||.|||||.||.||||||||.||||||||||||||||||||.||||||||.|||
Sbjct 2961 ATGATGCACAGCTTAGGCGTGAGGAAAAGAAGTTCAATGGTGATAGCAAAGTTTCCATTTCGTTTGAAAACTAT 3034
Query 349 CGAAAAGTGCATCCTTATGAAGACAGCGATAGCTCTGAAGATGAGGTTGACTGGCAGGATACTCGTGATGATCC 422
||.|||||.|||||||.|||||||||.||.|||||||||||.|||||||||||||||||.|||||.||.|||||
Sbjct 3035 CGCAAAGTTCATCCTTTTGAAGACAGTGACAGCTCTGAAGACGAGGTTGACTGGCAGGACACTCGAGACGATCC 3108
Query 423 CTACAGACCAGCAAAACCGGTTCCCACTCCTAAAAAGGGCTTTATTGGAAAAGGAAAAGATATCACCACCAAAC 496
|||||||||||||||.||..||||.|||||.||||||||.||||||||||||||||||||.|||||||||||.|
Sbjct 3109 CTACAGACCAGCAAAGCCAATTCCTACTCCCAAAAAGGGTTTTATTGGAAAAGGAAAAGACATCACCACCAAGC 3182
Query 497 ATGATGAAGTAGTATGTGGGAGAAAGAACACAGCAAGAATGGAAAATTTTGCACCTGAGTTTCAGGTAGGAGAT 570
|||||||||||||||||||.||.|||||||||||||||||||||||||||||.||||..|||||||||||.|||
Sbjct 3183 ATGATGAAGTAGTATGTGGAAGGAAGAACACAGCAAGAATGGAAAATTTTGCCCCTGGCTTTCAGGTAGGGGAT 3256
Query 571 GGAATTGGAATGGATTTAAAACTATCAAACCATGTTTTCAATGCTTTAAAACAACATGCCTACTCAGAAGAACG 644
|||||||||||||||||.||||||||.|||||.|||||.|||||.|||||||||||.||||||||||||||.||
Sbjct 3257 GGAATTGGAATGGATTTGAAACTATCCAACCACGTTTTTAATGCCTTAAAACAACACGCCTACTCAGAAGAGCG 3330
Query 645 TCGAAGTGCCCGCCTACATGAGAAAAAGGAGCATTCTACAGCAGAAAAAGCAGTTGATCCTAAGACACGTTTAC 718
|||.||||||||.|||||.|||||.|||||.||||||||.||.||||||||||||||||||||||||||.||||
Sbjct 3331 TCGGAGTGCCCGTCTACACGAGAAGAAGGAACATTCTACCGCTGAAAAAGCAGTTGATCCTAAGACACGCTTAC 3404
Query 719 TTATGTATAAAATGGTCAACTCTGGAATGTT-GAGACANTCACNGGNTGTTATTAGTNCAGNAAAGNNNTCTTG 791
||||||||||||||||||||||||||||||| ||||||.||||.||.|| |||||||.|||.||||...|| ||
Sbjct 3405 TTATGTATAAAATGGTCAACTCTGGAATGTTGGAGACAATCACTGGCTG-TATTAGTACAGGAAAGGAATC-TG 3476
Query 792 TTGTTCTTTCATGCATATGGAGGGAGCATGGAGGATGAAAAGGANGATTGTAAAGGTTATACTTACAGAA---- 861
||| |||||||||||||||||||||| |||||.|..|.|| ||.||
Sbjct 3477 TTG-TCTTTCATGCATATGGAGGGAG-----------------------GTAAATGAAAAAC---CACAACCAC 3523
Query 862 ---TGTGCCATCAAGGTATTTAAAACAAC-----CCT------TAAATGATTTA---AGAATC-----GTG--- 910
.|||| ||.||| .|.|||.||.| ||| |.|..|||||| |||||| |||
Sbjct 3524 AACAGTGC---CACGGT-GTGAAAGCACCTTTCTCCTCAGGACTGACGGATTTACGTAGAATCTAACAGTGCTG 3593
Query 911 ----ACAAATATATTAAAGATGATTTCAGG--TTTAAAGATCGCTTCAGTAAACTAAATCCACGTAAGATCATC 978
.|||.| ||| ||||.|.|||.||.|.||| ||||
Sbjct 3594 CAGAGCAAGT-----------------AGGCATTTAGACATCACTACTGTA---TAAA---------------- 3631
Query 979 CGCATGTGGGCAGAAAAAGAA-ATG---------------CACAATCTCG----CAAGAATGCAGAGAGCTGGA 1032
||.||..||..|||||.||| ||| ||.|||.| | ||||||||||||..||||||
Sbjct 3632 -GCCTGGAGGATGAAAAGGAAGATGGTAAAGCTATACCAACAGAATGT-GCCATCAAGAATGCAGAAGGCTGGA 3703
Query 1033 ATTCCTTGTCCAACAGTTGTACTACTGAAGAAACACATTTTAGTTATGTCTTTTATTGGCCATGATCAAGTTCC 1106
|||||||||||||||||||||||.||.|||||.||||||||||||||||||||.||||||||||||||||||||
Sbjct 3704 ATTCCTTGTCCAACAGTTGTACTGCTTAAGAAGCACATTTTAGTTATGTCTTTCATTGGCCATGATCAAGTTCC 3777
Query 1107 AGCCCCTAAATTAAAAGAAGTAAAGCTCAATAGTGAAGAAATGAAAGAAGCCTACTATCAAACTCTTCATTTGA 1180
|||||||||||||||||||||||||||.|.||.|||||||||||||||.|||||||||||.|||||||||||||
Sbjct 3778 AGCCCCTAAATTAAAAGAAGTAAAGCTTAGTAATGAAGAAATGAAAGATGCCTACTATCAGACTCTTCATTTGA 3851
Query 1181 TGCGGCAGTTATATCATGAATGTACGCTTGTCCATGCTGACCTCAGTGAGTATAACATGCTGTGGCATGCTGGA 1254
|||.|||.||||||.|.||||||||.|||||.||||||||||||||.||||||||||||.|||||||||||||.
Sbjct 3852 TGCAGCAATTATATAACGAATGTACCCTTGTGCATGCTGACCTCAGCGAGTATAACATGTTGTGGCATGCTGGG 3925
Query 1255 AAGGTCTGGTTGATCGATGTCAGTCAGTCAGTAGAACCTACCCACCCTCACGGCCTGGAGTTCTTGTTCCGGGA 1328
||||||||||||||.||.|||||||||||.|||||.||.|||||.|||||.||||||||||||||.|||||.||
Sbjct 3926 AAGGTCTGGTTGATTGACGTCAGTCAGTCGGTAGAGCCAACCCATCCTCATGGCCTGGAGTTCTTATTCCGTGA 3999
Query 1329 CTGCAGGAATGTCTCGCAGTTTTTCCAGAAAGGAGGAGTCAAGGAAGCCCTTAGTGAACGAGAACTCTTCAATG 1402
|||.||||||||.||.|||||.|||||||||||||||||.|.|||||||||.|.||||||.||.||.|||||||
Sbjct 4000 CTGTAGGAATGTTTCACAGTTCTTCCAGAAAGGAGGAGTAACGGAAGCCCTCAATGAACGGGAGCTGTTCAATG 4073
Query 1403 CTGTTTCAGGCTTAAACATCACAGCAGATAATGAAGCTGATTTTTTAGCTGAGATAGAAGCTTTGGAGAAAATG 1476
|||||||.|||.|.||||||.|.|||||.||||||||||||||.||||||||||||||||||||||||||.|||
Sbjct 4074 CTGTTTCTGGCCTGAACATCTCGGCAGACAATGAAGCTGATTTCTTAGCTGAGATAGAAGCTTTGGAGAAGATG 4147
Query 1477 AATGAAGATCACGTTCAGAAGAATGGAAGGAAAGCTGCTTCATTTTTGAAAGATGATGGAGACCCACC------ 1544
||||||||||||.||||||||||.||.||||||||.||.||.|||.||||||||||||||..||||||
Sbjct 4148 AATGAAGATCACATTCAGAAGAACGGGAGGAAAGCAGCCTCGTTTCTGAAAGATGATGGAAGCCCACCTGTGCT 4221
Query 1545 --------ACTACTATA----TGATGAA---------------------------------------------- 1560
||||.||.| |||.|.|
Sbjct 4222 GTCTGCCGACTAGTACAGCGGTGACGGACGGCAGCTGCCATAGCCAGCGAGTGGAGGTGACCTGACATACCAAA 4295
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4296 GCAGGAGTGGACAGTGCTGCTTCTGGGCTTCTCACTTGTGACCCACGTGCCAGATGTGTGCAATTTTTAACTCG 4369
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4370 GCATTGAAAGAATAAAATGTCACTACCTCTCATCTTACAAAAAGGATAATATAATTCTTTAACAGGTATAGATG 4443
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4444 TGTAGCCACAGGAGTCTGGATTTTATACAACTCATGATCTGAAGTGTCTAGATGAGGATTTTCACATAGGCAGT 4517
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4518 GTTTCCAAATGTGGGAGGTGGGGACTGAGGTGTTTGCAGGGGAGGCTCGATGGCTGCGCTCTGCTCCATTCCGC 4591
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4592 TCGCCTCCTGCTTTCCCTTGCGTCTTTGGGTGGATGTTGCTGTTTTAAATTAGCCCTTCCTAGCTGTTTGACCG 4665
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4666 TGAGCGTGGAGACCCCAGTGGGTACTAGAAATGGGCACTTGGCCTCAGTGGATGGTGGAAATGGACATAAGCAT 4739
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4740 TTTATTGGTACACCGTAGATGTGTGGAATTCTACATTTCCGTCTCATAGCCAGGAGAGGTGACAGGTTTCTGAA 4813
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4814 AGATAAATATAAAAGGATTTCTTAACTACATTTTAAAACTTAACTTTCAGGTTTTCTTCATTAGGTTAAATGGT 4887
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4888 TGGTTATTTACATTTATAATGAGAATACAAAGTATCTGGAAGGGCAGAAGGTAAGAATGGGATCTGCTACATTT 4961
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4962 TAAGAAGGCAGTGAAACATTTCCGTTTACGTTTCCCCAAATTGTTCACATATTGATTGCTAATCATTTGGAGAG 5035
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 5036 AACTAGAACAAAGTAAGTGGAGCTGTTCAGTAAGTGGAAGACACAGCCTGAACAGCTCAAGTACTGAATTGACC 5109
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 5110 GGCTAACTCGGCTGTGGGCCTCTGCCAGCGTCACACTGGCTGGACTCGGCCTGAGAAGGTGAGCCTTGTTCTGA 5183
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 5184 AGACCAGTGCTTGCTTGCTCTCACCTCATTACCCCAGTTCCGGGAGTTACATTGGATCCACTAACCAGCTTCAC 5257
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 5258 TTTCTGTCTGGTTATAAAGAGTAAATGTAATTTATAGTTGAAAAATTTTAACATTATTTTAAATTGCCAAATAT 5331
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 5332 GTTCTTTCTCGACTATTTATTTTTGTTTCTGTTCTACTGCTTTAATTGCATTTCAGAGGAGTGAATTTAGGTGG 5405
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 5406 CTCATCCCACTTATGTTTGCTGCTCCACACAAAGATTTAAATGATGAGAAATTATTGGCTGGACACAAATTGCA 5479
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 5480 GAAAAGTCATTAGAAACAATCATTTAAAACTTTGTTTGCTTTCTTCACATATTCTTTCTCAAACCATTGCTTGG 5553
Query 1561 ---------------------------------------------------------- 1560
Sbjct 5554 AGTGTGCTATGAACTTGCCTTTCAAGAAATTAAAAATGAAGAGATCATTTTAGAATTG 5611
