Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14919
- Subject:
- XM_017315440.1
- Aligned Length:
- 3127
- Identities:
- 1757
- Gaps:
- 1133
Alignment
Query 1 ATGGCCGCCGCGGAGACCCAGTCGCTACGGGAGCAGCCAGAGATGGAAGATGC---TAATTCTGAAAAGAGTAT 71
|||||||||.|||||.|||.|||.||.||||||||..|.||||||||.||||| ||||||||||||||||.|
Sbjct 1 ATGGCCGCCACGGAGCCCCCGTCCCTGCGGGAGCAAGCTGAGATGGATGATGCTGATAATTCTGAAAAGAGTGT 74
Query 72 AAATGAAGAAAATGGAGAAGTATCAGAAGACCAGTCTCAAAATAAGCACAGTCGTCACAAAAAAAAGAAGCATA 145
||||||||||||||||||.||||||||||||||.|||||||||||.||||||||||||||||||||||||||||
Sbjct 75 AAATGAAGAAAATGGAGAGGTATCAGAAGACCAATCTCAAAATAAACACAGTCGTCACAAAAAAAAGAAGCATA 148
Query 146 AACACAGAAGTAAACATAAGAAACATAAACATTCCTCAGAAGAAGACAAGGATAAAAAACATAAACATAAGCAT 219
||||||||||||||||||||||||||||||||||||||||||||||.|.||||||||||||.||||||||||||
Sbjct 149 AACACAGAAGTAAACATAAGAAACATAAACATTCCTCAGAAGAAGATAGGGATAAAAAACACAAACATAAGCAT 222
Query 220 AAACATAAGAAACACAAAAGAAAAGAGGTTATTGATGCTTCTGATAAAGAGGGTATGTCTCCAGCAAAAAGAAC 293
||.||||||||.||||||.|.|||||.|||||.||.|||||.||.|||||.||..||||.||.|||||||||||
Sbjct 223 AAGCATAAGAAGCACAAACGGAAAGAAGTTATCGAGGCTTCCGACAAAGAAGGCCTGTCCCCTGCAAAAAGAAC 296
Query 294 TAAACTTGATGATTTAGCTTTGCTAGAAGACTTGGAAAAACAGAGAGCCTTGATTAAGGCCGAACTTGATAATG 367
|||.||||||||||||||||||||.||||||||||||||.|||||||||||||||||.||.||.||||||||||
Sbjct 297 TAAGCTTGATGATTTAGCTTTGCTGGAAGACTTGGAAAAGCAGAGAGCCTTGATTAAAGCTGAGCTTGATAATG 370
Query 368 AGTTAATGGAAGGAAAGGTCCAGTCTGGTATGGGGCTCATTTTGCAAGGTTATGAGTCTGGCTCTGAAGAAGAG 441
||||||||||.||.||||||||||||||.||||||||||||||||||||.||||||||||||||.||||||||.
Sbjct 371 AGTTAATGGAGGGGAAGGTCCAGTCTGGAATGGGGCTCATTTTGCAAGGCTATGAGTCTGGCTCCGAAGAAGAA 444
Query 442 GGGGAAATTCATGAAAAGGCAAGAAATGGAAATAGGTCTAGTACTAGATCTTCAAGTACAAAGGGGAAACTTGA 515
||.||.|||||.|||||||||||||||||.||.|||||.|||||.||.|||||.|||||...|||.||||||||
Sbjct 445 GGAGAGATTCACGAAAAGGCAAGAAATGGGAACAGGTCCAGTACCAGGTCTTCCAGTACTCGGGGAAAACTTGA 518
Query 516 ACTTGTGGACAATAAAATTACTACAAAGAAACGAAGTAAAAGCAGATCCAAAGAACGGACTAGACATAGGTCTG 589
|.||..||||||.||||.||.|.||||||||||||||||.||||||||||||||||||||.||.||.||.||.|
Sbjct 519 AATTACGGACAACAAAAATAGTGCAAAGAAACGAAGTAAGAGCAGATCCAAAGAACGGACCAGGCACAGATCGG 592
Query 590 ATAAAAAGAAAAGTAAGGGGGGTATTGAAATCGTTAAAGAGAAAACAACTAGGAGCAAGTCAAAGGAGAGGAAA 663
|.||||.||||||.|||||||.|...|||||..|.|.|||||||.|||..|||||||||||.||||||||||.|
Sbjct 593 ACAAAAGGAAAAGCAAGGGGGCTGGGGAAATGCTGAGAGAGAAAGCAAACAGGAGCAAGTCCAAGGAGAGGAGA 666
Query 664 AAATCTAAAAGCCCATCCAAAAGAAGTAAGTCTCAAGATCAAGCAAGGAAATCAAAATCCCCTACCCTTAGAAG 737
|||||.||||||||||||||||||||.|||||||||||.|||||.||.||.|||||.||||||.|.||.|||.|
Sbjct 667 AAATCCAAAAGCCCATCCAAAAGAAGCAAGTCTCAAGACCAAGCTAGAAAGTCAAAGTCCCCTCCACTCAGACG 740
Query 738 GCGATCTCAAGAGAAAATTGGTAAGGCCAGATCTCCTACTGATGATAAGGGTTAAAATTGAAGATAAAAGTAAA 811
|||.||.|||||||||.|.||.|||||||||||||||.||||.||.|| |.|.||.|.||||||.|||.|.|||
Sbjct 741 GCGGTCCCAAGAGAAAGTGGGGAAGGCCAGATCTCCTGCTGAGGAGAA-GATGAAGAGTGAAGAGAAAGGCAAA 813
Query 812 TCAAAAGATAGGAAAAAATCCCCAATTATAAATGAAAGTAGAAGTCGCGATCGAGGTAAAAAATCCAGATCCCC 885
..|||.||||||||||||||.||||||.|||||||| ||.|||||.|||.||..|||||||||||..|||||
Sbjct 814 ATAAAGGATAGGAAAAAATCACCAATTGTAAATGAA---AGGAGTCGAGATAGATCTAAAAAATCCAAGTCCCC 884
Query 886 AGTTGATTTAAGAGGTAAATCCAAAGACAGAAGGTCACGGTCCAAAGAGAGAAAATCAAAACGGTCTGAAACTG 959
||||||.|||||||.||||||||||||||||||||||.|||||||||||.|.||.||||||||.|||||||.||
Sbjct 885 AGTTGACTTAAGAGATAAATCCAAAGACAGAAGGTCAAGGTCCAAAGAGCGGAAGTCAAAACGATCTGAAATTG 958
Query 960 ATAAAGAAAAGAAGCCAATTAAATCTCCCTCTAAAGATGCTTCATCTGGGAAAGAAAATAGGTCACCCAGCAGA 1033
|.|||||||||||||||||||||||.||.||.||.||||||||.||||||||.|||||||||||||||||.|||
Sbjct 959 ACAAAGAAAAGAAGCCAATTAAATCACCTTCAAAGGATGCTTCTTCTGGGAAGGAAAATAGGTCACCCAGTAGA 1032
Query 1034 AGACCTGGTCGTAGTCCTAAAAGAAGAAGTTTGTCTCCAAAACCACGTGATAAATCAAGAAGAAGCAGGTCTCC 1107
||||||||.||||||||||||||||||||||||||||||||||..||.||.||.|||||||||||.||||||||
Sbjct 1033 AGACCTGGCCGTAGTCCTAAAAGAAGAAGTTTGTCTCCAAAACTGCGAGACAAGTCAAGAAGAAGTAGGTCTCC 1106
Query 1108 ACTTTTGAATGATAGAAGATCTAAGCAGAGCAAATCCCCCTCGCGGACACTGTCTCCTGGGAGAAGAGCCAAGA 1181
.|||.|.|||||.|||||||||||||||||||||||.||.||.||.||.||||||||.||.|||||.|||||||
Sbjct 1107 GCTTCTCAATGACAGAAGATCTAAGCAGAGCAAATCGCCTTCTCGAACTCTGTCTCCAGGCAGAAGGGCCAAGA 1180
Query 1182 GCCGATCCTTAGAAAGAAAACGACGAGAACCAGAGAGGAGACGACTTTCTTCTCCAAGAACACGACCTCGAGAT 1255
||||||||||||||||||||||..|||||||||||||||||||||||||||||||.||||||.|||||||||||
Sbjct 1181 GCCGATCCTTAGAAAGAAAACGGAGAGAACCAGAGAGGAGACGACTTTCTTCTCCGAGAACAAGACCTCGAGAT 1254
Query 1256 GATATCCTCAGTAGACGTGAAAGATCAAAAGATGCCAGCCCCATCAATAGATGGTCTCCAACCCGAAGAAGAAG 1329
||||||||..|||||.|||||.|.||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 1255 GATATCCTTGGTAGATGTGAACGGTCAAAAGATGCCAGCCCCATCAATAGGTGGTCTCCAACCCGAAGAAGAAG 1328
Query 1330 TAGATCTCCCATTAGAAGGAGGTCTCGTTCCCCACTCAGACGTAGCAGGTCTCCAAGAAGAAGAAGCAGATCTA 1403
|||.|||||.||||||||||||||.|||||||||.|.|||||.|||||||||||.||||||||||||||.|||.
Sbjct 1329 TAGGTCTCCAATTAGAAGGAGGTCCCGTTCCCCATTGAGACGCAGCAGGTCTCCTAGAAGAAGAAGCAGGTCTC 1402
Query 1404 CTCGGAGAAGGGACAGAGGTCGGAGGAGCAGATCACGCTTGCGAAGGCGGTCTCGATCACGCGGTGGTCGTAGA 1477
||||||||||.||.||..|.||.||||||||.|||||||||.|.||..|||||||||||||.|||||||.|||.
Sbjct 1403 CTCGGAGAAGAGATAGGAGCCGAAGGAGCAGGTCACGCTTGAGGAGAAGGTCTCGATCACGGGGTGGTCATAGG 1476
Query 1478 CGAAGGAGCAGAAGCAAAGTAAAGGAAGATAAATTTAAAGGAAGTCTTTCTGAAGGAATGAAAGTTGAGCAGGA 1551
.||||||||||||||||||||||||||||||||||||||||||||||.||.||||||||||||||||||||.||
Sbjct 1477 AGAAGGAGCAGAAGCAAAGTAAAGGAAGATAAATTTAAAGGAAGTCTCTCAGAAGGAATGAAAGTTGAGCAAGA 1550
Query 1552 ATCTTCGTCTGATGATAACCTTGAAGACTTTGATGTAGAGGAAGAAGATGAAGAAGCCCTAATAGAACAGAGAA 1625
.|||||.||||||||||||||||||||.||||||||.|||||.|||||||||||.||.||||||||||||||||
Sbjct 1551 GTCTTCATCTGATGATAACCTTGAAGATTTTGATGTGGAGGAGGAAGATGAAGAGGCTCTAATAGAACAGAGAA 1624
Query 1626 GAATCCAAAGGCAGGCAATTGTTCAGAAATATAAATACCTTGCTGAAGATAGCAACATGTCTGTGCCATCTGAA 1699
||||.||.|||||.||||||||.||||||||||||||.|||||||||||||||||.||.||||||||||||||.
Sbjct 1625 GAATACAGAGGCAAGCAATTGTGCAGAAATATAAATATCTTGCTGAAGATAGCAATATATCTGTGCCATCTGAG 1698
Query 1700 CCAAGCAGCCCCCAGAGCAGTACGAGAACACGATCACCATCTCCAGATGACATTCTGGAGCGAGTAGCTGCTGA 1773
||||||||||||||||||||.||.|||.|||||||.||.||.|||||.|||||..||||||||||.||||||||
Sbjct 1699 CCAAGCAGCCCCCAGAGCAGCACAAGATCACGATCTCCTTCGCCAGACGACATCTTGGAGCGAGTTGCTGCTGA 1772
Query 1774 TGTTAAAGAGTATGAACGGGAAAATGTTGATACATTTGAGGCCTCAGTGAAAGCCAAGCATAATCTAATGACAG 1847
|||.|||||.|||||.|||||.||||||||.||.||||||||||||||.|||||||||||||||||||||||||
Sbjct 1773 TGTAAAAGAATATGAGCGGGAGAATGTTGACACCTTTGAGGCCTCAGTAAAAGCCAAGCATAATCTAATGACAG 1846
Query 1848 TTGAACAGAATAATGGTTCATCTCAGAAGAAGTTGTTGGCACCTGATATGTTTACAGAATCTGATGATATGTTT 1921
||||||||||||||||.|||||||||||||||.|.|||||||||||.||||||||||||||||||||.||||||
Sbjct 1847 TTGAACAGAATAATGGCTCATCTCAGAAGAAGATTTTGGCACCTGACATGTTTACAGAATCTGATGACATGTTT 1920
Query 1922 GCTGCGTATTTTGAT----------------------------------------------------------- 1936
|||||.|||||||||
Sbjct 1921 GCTGCTTATTTTGATGCTCAACCTAGTACAGCCAGTGAATGTTACTACATTTCATGCCTGTGTGGTAAGGGTAC 1994
Query 1937 -----------------------------------------------AGTGCTCGTCTTCGGGCCGCTGGCATT 1963
|||||||||||.||.||.|||||||||
Sbjct 1995 AAATGTCTCCATGGACAGGGAGGCAGAGAAGGAAATGATGCAAATCGAGTGCTCGTCTCCGAGCTGCTGGCATT 2068
Query 1964 GGAAAAGATTTCAAAGAGAATCCCAACCTCAGAGATAACTGGACCGATGCAGAAGGCTATTATCGTGTGAACAT 2037
||.||||||||||||||.|||||||||||||||||
Sbjct 2069 GGGAAAGATTTCAAAGAAAATCCCAACCTCAGAGA--------------------------------------- 2103
Query 2038 AGGTGAAGTCCTAGATAAACGTTACAATGTGTATGGCTACACTGGGCAAGGTGTATTCAGTAATGTTGTACGAG 2111
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 2112 CCAGAGATAATGCAAGAGCCAACCAAGAAGTGGCTGTAAAGATCATCAGAAACAATGAGCTCATGCAAAAGACT 2185
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 2186 GGTTTAAAAGAATTAGAGTTCTTGAAAAAACTTAATGATGCTGATCCTGATGACAAAATTCATTGTCTGAGATC 2259
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 2260 TTCAGGCACTCTATCACCAGCAGCATCTTGTCTGGTATTCGAGCCTCTCAGCATGAACTTACGAGAGGTGTAAA 2333
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 2334 AAAATATGTNAAAGATGTTGGTCTTCATATTAAGNCTGTAAGATCCTATAGTCAGCAGTTGTTCCTGGCATTGA 2407
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 2408 AACTCCTTAAAAGATGCAATATCNTACATGCAGATATCAAGCCAGACAATATCCTGGTTAATGAATCCAAAACT 2481
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 2482 ATTTTAAAGCTTTGCGATTTTGGGTCGGCTTCACATGTTGCGGATAATGACATAACACCTTATCTTGTCAGTAG 2555
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 2556 ATTTTATCGTGCTCCTGAAATCATTATAGGTAAAAGCTATGACTATGGTATAGATATGTGGTCTGTAGGTTGCA 2629
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 2630 CCTTATACGAACTCTATACTGGAAAAATTTTATTCCCTGGCAAAACCAATAACCATATGCTGAAGCTTGCAATG 2703
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 2704 GATCTCAAAGGAAAGATGCCAAATAAGATGATTCGAAAAGGTGTGTTCAAAGATCAGCATTTTGATCAAAATCT 2777
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 2778 CAACTTCATGTACATAGAAGTTGATAAAGTAACAGAGAGGGAGAAAGTTACTGTTATGAGCACCATTAATCCAA 2851
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 2852 CTAAGGACCTGTTGGCTGACTTGATTGGGTGCCAGAGACTTCCTGAAGACCAACGTAAGAAAGTACACCAGCTA 2925
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 2926 AAGGACTTGTTGGACCAGATTCTGATGTTGGACCCAGCTAAACGAATTAGCATCAACCAGGCCCTACAGCACGC 2999
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 3000 CTTCATCCAGGAAAAAATT 3018
Sbjct 2104 ------------------- 2103
