Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14983
- Subject:
- NM_001360167.1
- Aligned Length:
- 1822
- Identities:
- 1192
- Gaps:
- 431
Alignment
Query 1 ATGACCCTCACCCTCTCAGTCCTGATTTGCCTCGGGCTGAGTGTGGGCCCCAGGACCTGCGTGCAGGCAGGCAC 74
|||||.|.|.|||||.|||.||||.|.|||||.|||||||||.||||||||||||||.|||||||||||||..|
Sbjct 1 ATGACGCCCGCCCTCACAGCCCTGCTCTGCCTTGGGCTGAGTCTGGGCCCCAGGACCCGCGTGCAGGCAGGGCC 74
Query 75 CCTCCCCAAACCCACCCTCTGGGCTGAGCCAGCCTCTGTGAT-AGCTCGGGGGAAGCCCGTGACCCTCTGGTGT 147
|.||||||||||||||||||||||||||||||.||||||||| |||| ||||||..|||||||||.||||||||
Sbjct 75 CTTCCCCAAACCCACCCTCTGGGCTGAGCCAGGCTCTGTGATCAGCT-GGGGGAGCCCCGTGACCATCTGGTGT 147
Query 148 CAGGGGCCCCTGGAGACTGAGGAGTACCGTCTGGATAAGGAGGGACTCCCATGGGCCC--GGAAGAGACAGAAC 219
||||||..|||||||.|..|||||||||..||||||||.||||||..|||| |.|||| || |.|||.|.|||
Sbjct 148 CAGGGGAGCCTGGAGGCCCAGGAGTACCAACTGGATAAAGAGGGAAGCCCA-GAGCCCTTGG-ACAGAAATAAC 219
Query 220 CCACTGGAGCCTGGAGC-----CAAGGCCAAGTTCCACATTCCATCCACGGTGTATGACA-------GTGCAGG 281
||||||||.|| | ||||||||..|||..|||.|||||| |||||| .||||||
Sbjct 220 CCACTGGAACC-----CAAGAACAAGGCCAGATTCTCCATCCCATCC-------ATGACACAGCACCATGCAGG 281
Query 282 GCGATACCGCTGCTACTATGAGACCCCTGCAGGCTGGTCAGAGCCCAGTGACCCCCTGGAGCTGGTGGCGACAG 355
|.|||||||||||.|||||.|.|.|.||||||||||||||||||||||.||||||||||||||||||..|||||
Sbjct 282 GAGATACCGCTGCCACTATTACAGCTCTGCAGGCTGGTCAGAGCCCAGCGACCCCCTGGAGCTGGTGATGACAG 355
Query 356 GATTCTATGCA--GAACCCACTCTTTTAGCCCTGCCGAGTCCTGTGGTGGCCTCAGGAGGAAATGTGACCCTCC 427
||||||| || .|||||||.||.|.|||||||||.||.|||||||||||||||||.||.|||.|||||||||
Sbjct 356 GATTCTA--CAACAAACCCACCCTCTCAGCCCTGCCCAGCCCTGTGGTGGCCTCAGGGGGGAATATGACCCTCC 427
Query 428 AGTGTGATACACTGGACGGACTTCTCAC--GTTTGTTCTTGTTG-AGGA---AGAACAGAAGCTCCCCAGGACC 495
..||||...|||.|.|.||| |.|||| .||||||| ||.|| |||| ||||||..||||||||.|||||
Sbjct 428 GATGTGGCTCACAGAAGGGA--TATCACCATTTTGTTC-TGATGAAGGAAGGAGAACACCAGCTCCCCCGGACC 498
Query 496 CTGTACTCACAGAAGCTCCCCAAAGGGCCATCCCAGGCCCTGTTCCCTGTGGGTCCCGTGACCCCCAGCTGCAG 569
|||.||||||||.||||||.||..|||...|.|||||||||||||||||||||.|||||||||||||||..|||
Sbjct 499 CTGGACTCACAGCAGCTCCACAGTGGGGGGTTCCAGGCCCTGTTCCCTGTGGGCCCCGTGACCCCCAGCCACAG 572
Query 570 GTGGAGGTTCAGATGCTATTACTATTACAGGAAAAACCCTCAGGTGTGGTCGAACCCCAGTGACCTCCTGGAGA 643
|||||||||||.|||||||||||||||.|..||.|.|||.|.|||||||||..||||||||||||.||||||||
Sbjct 573 GTGGAGGTTCACATGCTATTACTATTATACAAACACCCCCCGGGTGTGGTCCCACCCCAGTGACCCCCTGGAGA 646
Query 644 TTCTGGTCCCAGGCGTGTCTAGGAAGCCCTCCCTCCTGATCCCGCAGGGCTCTGTCGTGGCCCGCGGAGGC--A 715
|||||..|.||||||||||||||||||||||||||||||.||.|||||||.|||||.||||||..| ||| |
Sbjct 647 TTCTGCCCTCAGGCGTGTCTAGGAAGCCCTCCCTCCTGACCCTGCAGGGCCCTGTCCTGGCCCCTG--GGCAGA 718
Query 716 GCCTGACCCTGCAGTGTCGCTCTGATGTCGGCTATGACATATTCGTTCTGTACAAGGAGGGGGAACATGACCTC 789
||||||||||.||||||.||||||||||||||||.||||.|||.||||||||.|||||||||||||.||||.||
Sbjct 719 GCCTGACCCTCCAGTGTGGCTCTGATGTCGGCTACGACAGATTTGTTCTGTATAAGGAGGGGGAACGTGACTTC 792
Query 790 GTCCAGGGCTCTGGCCAGCAGCCCCAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTC 863
.|||||.||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 793 CTCCAGCGCCCTGGCCAGCAGCCCCAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCCCTC 866
Query 864 CCACGGGGGCCAGTACAGATGCTACGGTGCACACAACCTCTCC-CCTAGGTGGTCGGCCCCCAGCGACCCCCTG 936
||||||||||||||||||.|||||.|||||||||||||||||| ||.| |||||||||||||||||||||||||
Sbjct 867 CCACGGGGGCCAGTACAGGTGCTATGGTGCACACAACCTCTCCTCCGA-GTGGTCGGCCCCCAGCGACCCCCTG 939
Query 937 GCCATCCTGATCGCAGGACTGATCCCTGACATACCCG---CCCTCTCGGTGCAGCCGGGCCCCAAGGTGGCCTC 1007
..|||||||||.|||||||.||||..||||| ||| ||||.||.|..|||||||||||||..||||||||
Sbjct 940 AACATCCTGATGGCAGGACAGATCTATGACA---CCGTCTCCCTGTCAGCACAGCCGGGCCCCACAGTGGCCTC 1010
Query 1008 AGGAGAGAACGTGACCCTGCTGTGTCAGTCATGGCATCAGATAGACACTTTCTTTTTGACCAAGGAGGGGGCAG 1081
|||||||||||||||||||||||||||||||.||..|.|..|.|||||||||.||.|||||||.||.|||||||
Sbjct 1011 AGGAGAGAACGTGACCCTGCTGTGTCAGTCACGGGGTTATTTTGACACTTTCCTTCTGACCAAAGAAGGGGCAG 1084
Query 1082 CCCATCCCCCGCTGTGTCTAAAGTCAAAGTAC-CAGTCTTATAGACACCAGGCTGAATTCTCCATGAGTCCTGT 1154
||||||||||.|||.||||.|..||||.|||| .|| ||.|||...||||||||||||||.|||||||||||||
Sbjct 1085 CCCATCCCCCACTGCGTCTGAGATCAATGTACGGAG-CTCATAAGTACCAGGCTGAATTCCCCATGAGTCCTGT 1157
Query 1155 GACCTCAGCCCAGGGTGGAACCTACCGATGCTACAGCGCAATCAGGTCCTACCCCTACCTGCTGTCCAGCCCTA 1228
||||||||||||.|..||.||||||.|.||||||.||.||..|||.|||.|||||.||||||||||...|||.|
Sbjct 1158 GACCTCAGCCCACGCGGGGACCTACAGGTGCTACGGCTCATACAGCTCCAACCCCCACCTGCTGTCTTTCCCCA 1231
Query 1229 GTTACCCCCAGGAGCTCGTGGTCTCAGGACCCTCTGG-GGATCCCAGCCTCTCACCTACAGGCTCCACCC-CCA 1300
||.|.||||.|||.|||.||||||||||||.|||||| ||.| ||||||||.||||.||||| .||.||| |||
Sbjct 1232 GTGAGCCCCTGGAACTCATGGTCTCAGGACACTCTGGAGGCT-CCAGCCTCCCACCCACAGG-GCCGCCCTCCA 1303
Query 1301 CACCTGGCCCTGAGGACCAGCCCCTCAC-CCCCACGGGGTTGGATCCCCAGAGTGG----TCTGGGAAGGCA-- 1367
|||||| |||||| |.|||.||..| .||.||||| ||| ||
Sbjct 1304 CACCTG----------------CCTCACACGCCAAGGATT-------ACACAGTGGAGAATCT-------CATC 1347
Query 1368 --CCTGGGGGTTGTGACTGGGGTCTCAGTGGC---CTTCGTCCTGCTGCTGTTCCTC---CTCCTCTTCCTCCT 1433
|.|||| || |||| |||.||| |||.|||||||| .|.||.||
Sbjct 1348 CGCATGGG-----------------CA-TGGCAGGCTTGGTC---CTGGTGTTCCTCGGGATTCTGTT------ 1394
Query 1434 CCTCCGACATCGGCATCAGAGCAAACACAGGACATCGGCCCATTTCTACCGTCCTGCAGGGGCTGCGGGGCCAG 1507
||..||| .|.|||.||| |||||
Sbjct 1395 --------------ATTTGAG---GCTCAGCACA-----------------------------------GCCAG 1416
Query 1508 AG-----CCCAAGGACCAGGGCCTGCAGAAGAGGGCCAGCCCAGTTGCTGACATCCAGGAGGAAATTCTCAATG 1576
|| |||||| .||||| ||.|||||
Sbjct 1417 AGAAACCCCCAAG---------ATGCAG--------------------------CCGGGAGG------------ 1443
Query 1577 CTGCCGTGAAGGACACACAGCCCAAGGACGGGGTGGAGATGGATGCTCGGGCTGCTGCATCTGAAGCCCCCCAG 1650
Sbjct 1444 -------------------------------------------------------------------------- 1443
Query 1651 GATGTGACCTACGCCCAGCTACACAGCTTGACCCTCAGACGGGAGGCAACTGAGCCTCCTCCATCCCAGGAAAG 1724
Sbjct 1444 -------------------------------------------------------------------------- 1443
Query 1725 GGAACCTCCAGCTGAACCCAGCATCTACGCCCCCCTGGCCATCCAC 1770
Sbjct 1444 ---------------------------------------------- 1443
