Construct: ORF ccsbBroadEn_14983
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002955.1_s300c1, BRDN0000396643
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LILRB5 (10990)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10990 | LILRB5 | leukocyte immunoglobulin li... | NM_006840.5 | 99.8% | 99.6% | 938A>C;1625C>G;1671G>A |
| 2 | human | 10990 | LILRB5 | leukocyte immunoglobulin li... | NM_001081442.3 | 99.6% | 99.4% | (many diffs) |
| 3 | human | 10990 | LILRB5 | leukocyte immunoglobulin li... | XM_011526360.2 | 88% | 87.8% | (many diffs) |
| 4 | human | 10990 | LILRB5 | leukocyte immunoglobulin li... | XM_011526359.2 | 87.9% | 87.7% | (many diffs) |
| 5 | human | 10990 | LILRB5 | leukocyte immunoglobulin li... | NM_001304457.2 | 86.5% | 86.4% | (many diffs) |
| 6 | human | 10990 | LILRB5 | leukocyte immunoglobulin li... | XM_011526361.2 | 85.6% | 85.5% | (many diffs) |
| 7 | human | 10990 | LILRB5 | leukocyte immunoglobulin li... | NM_001081443.3 | 82.7% | 82.5% | (many diffs) |
| 8 | human | 102725035 | LOC102725035 | leukocyte immunoglobulin-li... | XM_011548575.3 | 76.5% | 66.3% | (many diffs) |
| 9 | human | 102725035 | LOC102725035 | leukocyte immunoglobulin-li... | XM_011548574.3 | 76.4% | 66.2% | (many diffs) |
| 10 | human | 102725035 | LOC102725035 | leukocyte immunoglobulin-li... | XM_006726314.4 | 74.7% | 64.7% | (many diffs) |
| 11 | human | 102725035 | LOC102725035 | leukocyte immunoglobulin-li... | XM_006726313.4 | 74.6% | 64.6% | (many diffs) |
| 12 | human | 107987462 | LOC107987462 | leukocyte immunoglobulin-li... | XM_017030297.1 | 74.5% | 63.8% | (many diffs) |
| 13 | human | 107987462 | LOC107987462 | leukocyte immunoglobulin-li... | XM_017030296.1 | 74.4% | 63.7% | (many diffs) |
| 14 | human | 107987425 | LOC107987425 | leukocyte immunoglobulin-li... | XM_006726280.2 | 74.3% | 64.1% | (many diffs) |
| 15 | human | 11025 | LILRB3 | leukocyte immunoglobulin li... | NM_006864.4 | 74.2% | 63.8% | (many diffs) |
| 16 | human | 107987425 | LOC107987425 | leukocyte immunoglobulin-li... | XM_006726278.2 | 74.2% | 64% | (many diffs) |
| 17 | human | 11025 | LILRB3 | leukocyte immunoglobulin li... | NM_001081450.3 | 74.1% | 63.7% | (many diffs) |
| 18 | human | 10990 | LILRB5 | leukocyte immunoglobulin li... | XM_011526362.2 | 72.9% | 72.8% | (many diffs) |
| 19 | human | 10990 | LILRB5 | leukocyte immunoglobulin li... | XR_935723.1 | 70.3% | (many diffs) | |
| 20 | human | 10990 | LILRB5 | leukocyte immunoglobulin li... | XR_935722.1 | 70.2% | (many diffs) | |
| 21 | human | 11025 | LILRB3 | leukocyte immunoglobulin li... | XM_024451332.1 | 66.5% | 57% | (many diffs) |
| 22 | human | 102725035 | LOC102725035 | leukocyte immunoglobulin-li... | XR_001756785.2 | 63.8% | (many diffs) | |
| 23 | human | 107987425 | LOC107987425 | leukocyte immunoglobulin-li... | XR_952182.3 | 63.4% | (many diffs) | |
| 24 | human | 107987462 | LOC107987462 | leukocyte immunoglobulin-li... | XR_001756804.1 | 62.8% | (many diffs) | |
| 25 | human | 107987441 | LOC107987441 | leukocyte immunoglobulin-li... | XM_017030292.1 | 26.1% | 22.4% | (many diffs) |
| 26 | human | 112268334 | LOC112268334 | leukocyte immunoglobulin-li... | XM_024452538.1 | 26.1% | 22.4% | (many diffs) |
| 27 | human | 112268336 | LOC112268336 | leukocyte immunoglobulin-li... | XM_024452546.1 | 26.1% | 22.4% | (many diffs) |
| 28 | human | 112268337 | LOC112268337 | leukocyte immunoglobulin-li... | XM_024452551.1 | 26.1% | 22.4% | (many diffs) |
| 29 | human | 112268340 | LOC112268340 | leukocyte immunoglobulin-li... | XM_024452562.1 | 26.1% | 22.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1836
- ORF length:
- 1770
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC CCTCACCCTC TCAGTCCTGA TTTGCCTCGG GCTGAGTGTG GGCCCCAGGA 121 CCTGCGTGCA GGCAGGCACC CTCCCCAAAC CCACCCTCTG GGCTGAGCCA GCCTCTGTGA 181 TAGCTCGGGG GAAGCCCGTG ACCCTCTGGT GTCAGGGGCC CCTGGAGACT GAGGAGTACC 241 GTCTGGATAA GGAGGGACTC CCATGGGCCC GGAAGAGACA GAACCCACTG GAGCCTGGAG 301 CCAAGGCCAA GTTCCACATT CCATCCACGG TGTATGACAG TGCAGGGCGA TACCGCTGCT 361 ACTATGAGAC CCCTGCAGGC TGGTCAGAGC CCAGTGACCC CCTGGAGCTG GTGGCGACAG 421 GATTCTATGC AGAACCCACT CTTTTAGCCC TGCCGAGTCC TGTGGTGGCC TCAGGAGGAA 481 ATGTGACCCT CCAGTGTGAT ACACTGGACG GACTTCTCAC GTTTGTTCTT GTTGAGGAAG 541 AACAGAAGCT CCCCAGGACC CTGTACTCAC AGAAGCTCCC CAAAGGGCCA TCCCAGGCCC 601 TGTTCCCTGT GGGTCCCGTG ACCCCCAGCT GCAGGTGGAG GTTCAGATGC TATTACTATT 661 ACAGGAAAAA CCCTCAGGTG TGGTCGAACC CCAGTGACCT CCTGGAGATT CTGGTCCCAG 721 GCGTGTCTAG GAAGCCCTCC CTCCTGATCC CGCAGGGCTC TGTCGTGGCC CGCGGAGGCA 781 GCCTGACCCT GCAGTGTCGC TCTGATGTCG GCTATGACAT ATTCGTTCTG TACAAGGAGG 841 GGGAACATGA CCTCGTCCAG GGCTCTGGCC AGCAGCCCCA GGCTGGGCTC TCCCAGGCCA 901 ACTTCACCCT GGGCCCTGTG AGCCGCTCCC ACGGGGGCCA GTACAGATGC TACGGTGCAC 961 ACAACCTCTC CCCTAGGTGG TCGGCCCCCA GCGACCCCCT GGCCATCCtg atcgcaggac 1021 tgatccctga catacccgcc ctctcggtgc agccgggccc caaggtggcc tcaggagaga 1081 acgtgaccct gctgtgtcag tcatggcatc agatagacac tttctttttg accaaggagg 1141 gggcagccca tcccccgctg tgtctaaagt caaagtacca gtcttataga caccaggctg 1201 aattctccat gagtcctgtg acctcagccc agggtggaac ctaccgatgc tacagcgcaa 1261 tcaggtccta cccctacctg ctgtccagcc ctagttaccc ccaggagctc gtggtctcag 1321 gaccctctgg ggatcccagc ctctcaccta caggctccac ccccacacct ggccctgagg 1381 accagcccct cacccccacg gggttggatc cccagagtgg tctgggaagg cacctggggg 1441 ttgtgactgg ggtctcagtg gccttcgtcc tgctgctgtt cctcctcctc ttcctcctcc 1501 tccgacatcg gcatcagagc aaacacagga catcggccca tttctaccgt cctgcagggg 1561 ctgcggggcc agagcccaag gaccagggcc tgcagaagag ggccagccca gttgctgaca 1621 tccaggagga aattctcaat gctgccgtga aggacacaca gcccaaggac ggggtggaga 1681 tggatgctcg ggctgctgca tctgaagccc cccaggatgt gacctacgcc cagctacaca 1741 gcttgaccct cagacgggag gcaactgagc ctcctccatc ccaggaaagg gaacctccag 1801 ctgaacccag catctacgCC CCCCTGGCCA TCCACTACCC AACTTTCTTG TACAAAGTtg 1861 gcattataag aaagcattgc ttatcaattt gttgcaacga ac