Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14983
- Subject:
- NR_135494.2
- Aligned Length:
- 2776
- Identities:
- 1390
- Gaps:
- 1179
Alignment
Query 1 -------------------------------ATGACCCTCACCCTCTCAGTCCTGATTTGCCTCGGGCTGAGTG 43
|||||.|.|.|||||.|||.||||.|.|||||.|||||||||.
Sbjct 1 GCAGAGCGCGGGGTCACCGGGAGGAGACGCCATGACGCCCGCCCTCACAGCCCTGCTCTGCCTTGGGCTGAGTC 74
Query 44 TGGGCCCCAGGACCTGCGTGCAGGCAGGCACCCTCCCCAAACCCACCCTCTGGGCTGAGCCAGCCTCTGTGAT- 116
||||||||||||||.||.||||||||||..||.||||||||||||||||||||||||||||||.|||||||||
Sbjct 75 TGGGCCCCAGGACCCGCATGCAGGCAGGGCCCTTCCCCAAACCCACCCTCTGGGCTGAGCCAGGCTCTGTGATC 148
Query 117 AGCTCGGGGGAAGCCCGTGACCCTCTGGTGTCAGGGGCCCCTGGAGACTGAGGAGTACCGTCTGGATAAGGAGG 190
|||| ||||||..|||||||||.||||||||||||||..|||||||.|..|||||||||..||||||||.||||
Sbjct 149 AGCT-GGGGGAGCCCCGTGACCATCTGGTGTCAGGGGAGCCTGGAGGCCCAGGAGTACCAACTGGATAAAGAGG 221
Query 191 GACTCCCATGGGCCC-GGAAGAGACAGAACCCACTGGAGCCTGGAGC-----CAAGGCCAAGTTCCACATTCCA 258
||..|||| |.|||| ||.|.|||.|.|||||||||||.|| | ||||||||..|||..|||.|||
Sbjct 222 GAAGCCCA-GAGCCCTGGGACAGAAATAACCCACTGGAACC-----CAAGAACAAGGCCAGATTCTCCATCCCA 289
Query 259 TCCACGGTGTATGACA-------GTGCAGGGCGATACCGCTGCTACTATGAGACCCCTGCAGGCTGGTCAGAGC 325
||| |||||| .|||||||.|||||||||||.|||||.|.|.|.||||||||||||||||||
Sbjct 290 TCC-------ATGACACAGCACCATGCAGGGAGATACCGCTGCCACTATTACAGCTCTGCAGGCTGGTCAGAGC 356
Query 326 CCAGTGACCCCCTGGAGCTGGTGGCGACAGGATTCTATGCA--GAACCCACTCTTTTAGCCCTGCCGAGTCCTG 397
||||.||||||||||||||||||..|||||||||||| || .|||||||.||.|.|||||||||.||.||||
Sbjct 357 CCAGCGACCCCCTGGAGCTGGTGATGACAGGATTCTA--CAACAAACCCACCCTCTCAGCCCTGCCCAGCCCTG 428
Query 398 TGGTGGCCTCAGGAGGAAATGTGACCCTCCAGTGTGATACACTGGACGGACTTCTCAC--GTTTGTTCTTGTTG 469
|||||||||||||.||.|||.|||||||||..||||...|||.|.|.||| |.|||| .||||||| ||.||
Sbjct 429 TGGTGGCCTCAGGGGGGAATATGACCCTCCGATGTGGCTCACAGAAGGGA--TATCACCATTTTGTTC-TGATG 499
Query 470 -AGGA---AGAACAGAAGCTCCCCAGGACCCTGTACTCACAGAAGCTCCCCAAAGGGCCATCCCAGGCCCTGTT 539
|||| ||||||..||||||||.||||||||.||||||||.||||||.||..|||...|.||||||||||||
Sbjct 500 AAGGAAGGAGAACACCAGCTCCCCCGGACCCTGGACTCACAGCAGCTCCACAGTGGGGGGTTCCAGGCCCTGTT 573
Query 540 CCCTGTGGGTCCCGTGACCCCCAGCTGCAGGTGGAGGTTCAGATGCTATTACTATTACAGGAAAAACCCTCAGG 613
|||||||||.|||||||||||||||
Sbjct 574 CCCTGTGGGCCCCGTGACCCCCAGC------------------------------------------------- 598
Query 614 TGTGGTCGAACCCCAGTGACCTCCTGGAGATTCTGGTCCCAGGCGTGTCTAGGAAGCCCTCCCTCCTGATCCCG 687
|.||||||||||||||||||||||||||||||.||.|
Sbjct 599 -------------------------------------CACAGGCGTGTCTAGGAAGCCCTCCCTCCTGACCCTG 635
Query 688 CAGGGCTCTGTCGTGGCCCGCGGAGGC--AGCCTGACCCTGCAGTGTCGCTCTGATGTCGGCTATGACATATTC 759
||||||.|||||.||||||..| ||| |||||||||||.||||||.||||||||||||||||.||||.|||.
Sbjct 636 CAGGGCCCTGTCCTGGCCCCTG--GGCAGAGCCTGACCCTCCAGTGTGGCTCTGATGTCGGCTACGACAGATTT 707
Query 760 GTTCTGTACAAGGAGGGGGAACATGACCTCGTCCAGGGCTCTGGCCAGCAGCCCCAGGCTGGGCTCTCCCAGGC 833
||||||||.|||||||||||||.||||.||.|||||.||.||||||||||||||||||||||||||||||||||
Sbjct 708 GTTCTGTATAAGGAGGGGGAACGTGACTTCCTCCAGCGCCCTGGCCAGCAGCCCCAGGCTGGGCTCTCCCAGGC 781
Query 834 CAACTTCACCCTGGGCCCTGTGAGCCGCTCCCACGGGGGCCAGTACAGATGCTACGGTGCACACAACCTCTCC- 906
|||||||||||||||||||||||||||||||.||||||||||||||||.|||||.||||||||||||||||||
Sbjct 782 CAACTTCACCCTGGGCCCTGTGAGCCGCTCCTACGGGGGCCAGTACAGGTGCTATGGTGCACACAACCTCTCCT 855
Query 907 CCTAGGTGGTCGGCCCCCAGCGACCCCCTGGCCATCCTGATCGCAGGACTGATCCCTGACATACCCG---CCCT 977
||.| |||||||||||||||.||||||||||.||||||||||.||||||.||||..||||| ||| ||||
Sbjct 856 CCGA-GTGGTCGGCCCCCAGTGACCCCCTGGACATCCTGATCACAGGACAGATCTATGACA---CCGTCTCCCT 925
Query 978 CTCGGTGCAGCCGGGCCCCAAGGTGGCCTCAGGAGAGAACGTGACCCTGCTGTGTCAGTCATGGCATCAGATA- 1050
.||.|..|||||||||||||..||||||||||||||||||.||||||||||||||||||||.|| .|.||
Sbjct 926 GTCAGCACAGCCGGGCCCCACAGTGGCCTCAGGAGAGAACATGACCCTGCTGTGTCAGTCACGG----GGGTAT 995
Query 1051 ---GACACTTTCTTTTTGACCAAGGAGGGGGCAGCCCATCCCCCGCTGTGTCTAAAGTCAAAGTAC-CAGTCTT 1120
|||||||||.||.|||||||.||.|||||||||||||||||.|||.||||.|..||||.|||| .|| ||.
Sbjct 996 TTTGACACTTTCCTTCTGACCAAAGAAGGGGCAGCCCATCCCCCACTGCGTCTGAGATCAATGTACGGAG-CTC 1068
Query 1121 ATAGACACCAGGCTGAATTCTCCATGAGTCCTGTGACCTCAGCCCAGGGTGGAACCTACCGATGCTACAGCGCA 1194
|||...||||||||||||||.|||||||||||||||||||||||||.|..||.||||||.|.||||||.||.||
Sbjct 1069 ATAAGTACCAGGCTGAATTCCCCATGAGTCCTGTGACCTCAGCCCACGCGGGGACCTACAGGTGCTACGGCTCA 1142
Query 1195 ATCAGGTCCTACCCCTACCTGCTGTCCAGCCCTAGTTACCCCCAGGAGCTCGTGGTCTCAGGACCCTCTGG-GG 1267
..|||.|||.|||||.||||||||||...|||.|||.|.||||.|||.|||.||||||||||||.|||||| ||
Sbjct 1143 CGCAGCTCCAACCCCCACCTGCTGTCTTTCCCCAGTGAGCCCCTGGAACTCATGGTCTCAGGACACTCTGGAGG 1216
Query 1268 ATCCCAGCCTCTCACCTACAGGCTCCACCC-CCACACCTGGCCCTGAGGACCAGCCCCTCACCCCCACGGGGTT 1340
.| ||||||||.||||.||||| .||.||| |||||||
Sbjct 1217 CT-CCAGCCTCCCACCCACAGG-GCCGCCCTCCACACC------------------------------------ 1252
Query 1341 GGATCCCCAGAGTGGTCTGGGAAGGCACCTGGGGGTTGTGACTGGGGTCTCAGTGGCCTTCGTCCTGCTGCTGT 1414
||||||||||||..||||||.||||.|||.|||||||||.||||||||||||||||||||.|
Sbjct 1253 ------------TGGTCTGGGAAGATACCTGGAGGTTTTGATTGGGGTCTCGGTGGCCTTCGTCCTGCTGCTCT 1314
Query 1415 TCCTCCTCCTCTTCCTCCTCCTCCGACATCGGCATCAGAGCAAACACAGGACATCGGCCC------------AT 1476
||||||||||||||||||||||||..|.||.||.|||.|||||||||||||||||.|.|| ||
Sbjct 1315 TCCTCCTCCTCTTCCTCCTCCTCCTCCGTCAGCGTCACAGCAAACACAGGACATCTGACCAGAGAAAGACTGAT 1388
Query 1477 TTCTACCGTCCTGCAGGGGCTGCGGGGCCAGAGCCCAAGGACCAGGGCCTGCAGAAGAGGGCCAGCCCAGTTGC 1550
|||.|.|||||||||||||||||||.|.||||||||||||||..||||||||.||.||||.|||||||||.|||
Sbjct 1389 TTCCAGCGTCCTGCAGGGGCTGCGGAGACAGAGCCCAAGGACAGGGGCCTGCTGAGGAGGTCCAGCCCAGCTGC 1462
Query 1551 TGACATCCAGGAGGAAATTCTCAATGC--------------------------------TGCC---GTGAA--- 1586
||||.|||||||.||||..|||.| || |||| |||||
Sbjct 1463 TGACGTCCAGGAAGAAAACCTCTA-GCCCACACGATGAAGACCCCCAGGCAGTGACGTATGCCCCGGTGAAACA 1535
Query 1587 ---------------------------------------------------------GGACACACAGCCCAAGG 1603
||||||| ||||
Sbjct 1536 CTCCAGTCCTAGGAGAGAAATGGCCTCTCCTCCCTCCTCACTGTCTGGGGAATTCCTGGACACA------AAGG 1603
Query 1604 ACGG---GGTGG------------AGATGGATGCTCGGGCTGCTGCATCTGAAGCCCCCCAGGATGTGACCTAC 1662
||.| ||||| |||||||..||..|||||||||||||||||||.|||||||||||||||||
Sbjct 1604 ACAGACAGGTGGAAGAGGACAGGCAGATGGACACTGAGGCTGCTGCATCTGAAGCCTCCCAGGATGTGACCTAC 1677
Query 1663 GCCCAGCTACACAGCTTGACCCTCAGACGGGAGGCAACTGAGCCTCCTCCATCCCAGGAAAGGGAACCTCCAGC 1736
||||||||.||||||||||||||.||||||.|||||||||||||||||||||||||||||.|||||||||||||
Sbjct 1678 GCCCAGCTGCACAGCTTGACCCTTAGACGGAAGGCAACTGAGCCTCCTCCATCCCAGGAAGGGGAACCTCCAGC 1751
Query 1737 TGAACCCAGCATCTACGCCCCCCTGGCCATCCAC---------------------------------------- 1770
|||.|||||||||||||||.|.||||||||||||
Sbjct 1752 TGAGCCCAGCATCTACGCCACTCTGGCCATCCACTAGCCCGGGGGGTACGCAGACCCCACACTCAGCAGAAGGA 1825
Query 1771 -------------------------------------------------------------------------- 1770
Sbjct 1826 GACTCAGGACTGCTGAAGGCACGGGAGCTGCCCCCAGTGGACACCAGTGAACCCCAGTCAGCCTGGACCCCTAA 1899
Query 1771 -------------------------------------------------------------------------- 1770
Sbjct 1900 CACAGACCATGAGGAGACGCTGGGAACTTGTGGGACTCACCTGACTCAAAGATGACTAATATCGTCCCATTTTG 1973
Query 1771 -------------------------------------------------------------------------- 1770
Sbjct 1974 GAAATAAAGCAACAGACTTCTCAACAATCAATGAGTTAATAACAAAAAAACAAAAAACAAAAACAGACGTAAAG 2047
Query 1771 -------------------------------------------------------------------------- 1770
Sbjct 2048 GCCGGGTGTGGTACTCAGGAGGCTGAGTGGGGAGGATTCCTTGAACACAAGAAGTTAAGGCTGCTGAGGCTGCA 2121
Query 1771 -------------------------------------------------------------------------- 1770
Sbjct 2122 GTGAGCTATGACTGTGCCACTGCACTCCAGCCTGTGTGACAGAGCGAGACCTTGTCTCTAAAAAAAAAAACAGT 2195
Query 1771 -------------------------------------------------------------------------- 1770
Sbjct 2196 GAATGTTTTAAACTGAATGATAATGTAAATATTATACATCGAACTTATGACATGGGAAAATTAAGAAGCATAAA 2269
Query 1771 -------------------------------------------------------------------------- 1770
Sbjct 2270 TAGGCCGGGCGCGGTGGCTCACGCCTATAATCTCAGCACTTTGGGAGGCTGATGCGGGCGGATCATGAGGTCAG 2343
Query 1771 -------------------------------------------------------------------------- 1770
Sbjct 2344 GAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAATTAGCCGGGCGTG 2417
Query 1771 -------------------------------------------------------------------------- 1770
Sbjct 2418 GTGGCGAGTGCCTATAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCATGAGCCCGGGAGGCAGAGCT 2491
Query 1771 -------------------------------------------------------------------------- 1770
Sbjct 2492 TGCAGTGAGCTGAGATCGCACCACTGCACTCCAGCCTGGGCGACAGAGTGAGATTCCGTCTCGAAAAAAAAAAA 2565
Query 1771 -------------------------------------- 1770
Sbjct 2566 AAAAGAAAGAAAAAAAATAAAAAAGAAGCATAACCAGG 2603
