Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14983
- Subject:
- XR_001756804.1
- Aligned Length:
- 2342
- Identities:
- 1472
- Gaps:
- 651
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGACAAGAAGGACCCAGCCTCCGAGCGGCCACACCCTGTGTGTCTCTCTGTCCTGCCAGCACTGAGGGCTCAT 74
Query 1 -------------------------------------ATGACCCTCACCCTCTCAGTCCTGATTTGCCTCGGGC 37
|||||.|.|.|||||.|||.||||.|.|||||.||||
Sbjct 75 CCCTCTGCAGAGCGCGGGGTCACCGGGAGGAGACGCCATGACGCCCGCCCTCACAGCCCTGCTCTGCCTTGGGC 148
Query 38 TGAGTGTGGGCCCCAGGACCTGCGTGCAGGCAGGCACCCTCCCCAAACCCACCCTCTGGGCTGAGCCAGCCTCT 111
|||||.||||||||||||||.|||||||||||||..||.||||||||||||||||||||||||||||||.||||
Sbjct 149 TGAGTCTGGGCCCCAGGACCCGCGTGCAGGCAGGGCCCTTCCCCAAACCCACCCTCTGGGCTGAGCCAGGCTCT 222
Query 112 GTGAT-AGCTCGGGGGAAGCCCGTGACCCTCTGGTGTCAGGGGCCCCTGGAGACTGAGGAGTACCGTCTGGATA 184
||||| |||| ||||||..|||||||||.||||||||||||||..||.||||.|..||||||||||.|||.|||
Sbjct 223 GTGATCAGCT-GGGGGAGCCCCGTGACCATCTGGTGTCAGGGGAGCCAGGAGGCCCAGGAGTACCGACTGCATA 295
Query 185 AGGAGGGACTCCCATGGGCCC--GGAAGAGACAGAACCCACTGGAGCCTGGAGC-----CAAGGCCAAGTTCCA 251
|.||||||..|||| |.|||| || |.|||.|.|||||||||||.|| | ||||||||..|||..
Sbjct 296 AAGAGGGAAGCCCA-GAGCCCTTGG-ACAGAAATAACCCACTGGAACC-----CAAGAACAAGGCCAGATTCTC 362
Query 252 CATTCCATCCACGGTGTATGACAG-------TGCAGGGCGATACCGCTGCTACTATGAGACCCCTGCAGGCTGG 318
|||.|||||| ||||||| |||||||.|||||||||||.|||||.|.|.|.|||||||||||
Sbjct 363 CATCCCATCC-------ATGACAGAGCACCATGCAGGGAGATACCGCTGCCACTATTACAGCTCTGCAGGCTGG 429
Query 319 TCAGAGCCCAGTGACCCCCTGGAGCTGGTGGCGACAGGATTCTATGCAG--AACCCACTCTTTTAGCCCTGCCG 390
|||||||||||.||||||||||||.|||||..|||||||..||| ||| |||||||.||.|.|||||||||.
Sbjct 430 TCAGAGCCCAGCGACCCCCTGGAGATGGTGATGACAGGAGCCTA--CAGCAAACCCACCCTCTCAGCCCTGCCC 501
Query 391 AGTCCTGTGGTGGCCTCAGGAGGAAATGTGACCCTCCAGTGTGATACACTGGACGGACTTCTCAC--GTTTGTT 462
||.|||||||||||||||||.||.|||.|||||||||..||||...|||.|.|.||| |.|||| .||||||
Sbjct 502 AGCCCTGTGGTGGCCTCAGGGGGGAATATGACCCTCCGATGTGGCTCACAGAAGGGA--TATCACCATTTTGTT 573
Query 463 CTTGTTG-AGGA---AGAACAGAAGCTCCCCAGGACCCTGTACTCACAGAAGCTCCCCAAAGGGCCATCCCAGG 532
| ||.|| |||| ||||||..||||||||.||||||||.||||||||.||||||.||...||...|.|||||
Sbjct 574 C-TGATGAAGGAAGGAGAACACCAGCTCCCCCGGACCCTGGACTCACAGCAGCTCCACAGTCGGGGGTTCCAGG 646
Query 533 CCCTGTTCCCTGTGGGTCCCGTGACCCCCAGCTGCAGGTGGAGGTTCAGATGCTATTACTATTACAGGAAAAAC 606
||||||||||||||||.|||||||||||||||..||||||||||||||.|||||||||||||||.| .|||.||
Sbjct 647 CCCTGTTCCCTGTGGGCCCCGTGACCCCCAGCCACAGGTGGAGGTTCACATGCTATTACTATTATA-CAAACAC 719
Query 607 CCTC-AGGTGTGGTCGAACCCCAGTGACCTCCTGGAGATTCTGGTCCCAGGCGTGTCTAGGAAGCCCTCCCTCC 679
||.| .|||||||||..||||||||||||.|||||||||||||..|.|||||||||||||||||||||||||||
Sbjct 720 CCCCTGGGTGTGGTCCCACCCCAGTGACCCCCTGGAGATTCTGCCCTCAGGCGTGTCTAGGAAGCCCTCCCTCC 793
Query 680 TGATCCCGCAGGGCTCTGTCGTGGCCCGCGGAGGC--AGCCTGACCCTGCAGTGTCGCTCTGATGTCGGCTATG 751
|||.||.|||||||.|||||.||||||..| ||| |||||||||||.||||||.||||||||||||||||..
Sbjct 794 TGACCCTGCAGGGCCCTGTCCTGGCCCCTG--GGCAGAGCCTGACCCTCCAGTGTGGCTCTGATGTCGGCTACA 865
Query 752 ACATATTCGTTCTGTACAAGGAGGGGGAACATGACCTCGTCCAGGGCTCTGGCCAGCAGCCCCAGGCTGGGCTC 825
|||.|||.||||||||.|||||||||||||.||||.||.|||||.||.||||||||||||||||||||||||||
Sbjct 866 ACAGATTTGTTCTGTATAAGGAGGGGGAACGTGACTTCCTCCAGCGCCCTGGCCAGCAGCCCCAGGCTGGGCTC 939
Query 826 TCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTCCCACGGGGGCCAGTACAGATGCTACGGTGCACACAA 899
||||||||||||||||||||||||||||||||||.||||.|.||||||||||||||.|||||||||||||||||
Sbjct 940 TCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCCCTCCAATGGGGGCCAGTACAGGTGCTACGGTGCACACAA 1013
Query 900 CCTCTCC-CCTAGGTGGTCGGCCCCCAGCGACCCCCTGGCCATCCTGATCGCAGGACTGATCCCTGACATACCC 972
||||||| ||.| |||||||||||||||||||||||||..|||||||||.|||||||.||||..||||| ||
Sbjct 1014 CCTCTCCTCCGA-GTGGTCGGCCCCCAGCGACCCCCTGAACATCCTGATGGCAGGACAGATCTATGACA---CC 1083
Query 973 G---CCCTCTCGGTGCAGCCGGGCCCCAAGGTGGCCTCAGGAGAGAACGTGACCCTGCTGTGTCAGTCATGGCA 1043
| ||||.||.|..|||||||||||||..||||||||||||||||||||||||||||||||||||||||||..
Sbjct 1084 GTCTCCCTGTCAGCACAGCCGGGCCCCACAGTGGCCTCAGGAGAGAACGTGACCCTGCTGTGTCAGTCATGGTG 1157
Query 1044 TCAGATAGACACTTTCTTTTTGACCAAGGAGGGGGCAGCCCATCCCCCGCTGTGTCTAAAGTCAAAGTAC-CAG 1116
.|||.|.|||||||||.||.|||||||.||.|||||||||||||||||.|||.||||.|..||||.|||| .||
Sbjct 1158 GCAGTTTGACACTTTCCTTCTGACCAAAGAAGGGGCAGCCCATCCCCCACTGCGTCTGAGATCAATGTACGGAG 1231
Query 1117 TCTTATAGACACCAGGCTGAATTCTCCATGAGTCCTGTGACCTCAGCCCAGGGTGGAACCTACCGATGCTACAG 1190
||.|||...||||||||||||||.|||||||||||||||||||||||||.|..||.||||||.|.||||||.|
Sbjct 1232 -CTCATAAGTACCAGGCTGAATTCCCCATGAGTCCTGTGACCTCAGCCCACGCGGGGACCTACAGGTGCTACGG 1304
Query 1191 CGCAATCAGGTCCTACCCCTACCTGCTGTC-CAGCCCTAGTTACCCCCAGGAGCTCGTGGTCTCAGGACCCTCT 1263
|.||..|||.|||.|||||.|||||||||| || |||.|||.|.||||.||||||||||||||||||||.||||
Sbjct 1305 CTCATACAGCTCCAACCCCCACCTGCTGTCTCA-CCCCAGTGAGCCCCTGGAGCTCGTGGTCTCAGGACACTCT 1377
Query 1264 GG-GGATCCCAGCCTCTCACCTACAGGCTCCACCC-CCACACCTGGCCCTGAGGACCAGCCCCTCACCCCCACG 1335
|| ||.| ||||||||.||||.||||| .||.||| |||||||
Sbjct 1378 GGAGGCT-CCAGCCTCCCACCCACAGG-GCCGCCCTCCACACC------------------------------- 1418
Query 1336 GGGTTGGATCCCCAGAGTGGTCTGGGAAGGCACCTGGGGGTTGTGACTGGGGTCTCAGTGGCCTTCGTCCTGCT 1409
||||||||||||..||||||.||||.|||.|||||||||.|||||||||||||||||
Sbjct 1419 -----------------TGGTCTGGGAAGATACCTGGAGGTTTTGATTGGGGTCTCGGTGGCCTTCGTCCTGCT 1475
Query 1410 GCTGTTCCTCCTCCTCTTCCTCCTCCTCCGACATCGGCATCAGAGCAAACACAGGACATCGG------------ 1471
|||.||||||||||||||||||||||||||||.||.||.|||.|||||||||||||||||.|
Sbjct 1476 GCTCTTCCTCCTCCTCTTCCTCCTCCTCCGACGTCAGCGTCACAGCAAACACAGGACATCTGGGCTGAGACTCT 1549
Query 1472 -----------CCC-----------------ATTTCTACCGTCCTGCAGGGGCTGCGGGGCCAGAGCCCAAGGA 1517
||| |||||.|.|||||||||||||||||||.|.|||||||||||||
Sbjct 1550 GTCCATCTTCACCCAGACCAGAGAAAGACTGATTTCCAGCGTCCTGCAGGGGCTGCGGAGACAGAGCCCAAGGA 1623
Query 1518 CCAGGGCCTGCAGAAGAGGGCCAGCCCAGTTGCTGACATCCAGGAGGAAATTCTCAATGCTGCCGTGAAGGACA 1591
|..||||||||.||.||||.|||||||||.|||||||.|||||||.||||..|||.||||||||||||||||||
Sbjct 1624 CAGGGGCCTGCTGAGGAGGTCCAGCCCAGCTGCTGACGTCCAGGAAGAAAACCTCTATGCTGCCGTGAAGGACA 1697
Query 1592 CACAGCCCAAGGACGGGGTGG----------------------------------------------------- 1612
|||||.|..|||||.||||||
Sbjct 1698 CACAGTCTGAGGACAGGGTGGAGCTGGACAGTCAGAGCCCACACGATGAAGACCCCCAGGCAGTGACGTATGCC 1771
Query 1613 -------------------------------------------------------------------------- 1612
Sbjct 1772 CCGGTGAAACACTCCAGTCCTAGGAGAGAAATGGCCTCTCCTCCCTCCTCACTGTCTGGGGAATTCCTGGACAC 1845
Query 1613 -----------------------------AGATGGATGCTCGGGCTGCTGCATCTGAAGCCCCCCAGGATGTGA 1657
|||||||..||..|||||||||||||||||||.||||||||||||
Sbjct 1846 AAAGGACAGACAGGTGGAAGAGGACAGGCAGATGGACACTGAGGCTGCTGCATCTGAAGCCTCCCAGGATGTGA 1919
Query 1658 CCTACGCCCAGCTACACAGCTTGACCCTCAGACGGGAGGCAACTGAGCCTCCTCCATCCCAGGAAAGGGAACCT 1731
|||||||||||||.||||||||||||||.||||||.|||||||||||||||||||||||||||||.||||||||
Sbjct 1920 CCTACGCCCAGCTGCACAGCTTGACCCTTAGACGGAAGGCAACTGAGCCTCCTCCATCCCAGGAAGGGGAACCT 1993
Query 1732 CCAGCTGAACCCAGCATCTACGCCCCCCTGGCCATCCAC----------------------------------- 1770
||||||||.|||||||||||||||.|.||||||||||||
Sbjct 1994 CCAGCTGAGCCCAGCATCTACGCCACTCTGGCCATCCACTAGCCCGGGGGGTACGCAGACCCCACACTCAGCAG 2067
Query 1771 -------------------------------------------------------------------------- 1770
Sbjct 2068 AAGGAGACTCAGGACTGCTGAAGGCACGGGAGCTGCCCCCAGTGGACACCAGTGAACCCCAGTCAGCCTGGACC 2141
Query 1771 -------------------------------------------------------------------------- 1770
Sbjct 2142 CCTAACACAGACCATGAGGAGACGCTGGGAACTTGTGGGACTCACCTGACTCAAAGATGACTAATATCGTCCCA 2215
Query 1771 ------------------------------------------------ 1770
Sbjct 2216 TTTTGGAAATAAAGCAACAGACTTCTCAACAATCAATGAGTTAATAAC 2263
