Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_14983
- Subject:
- XR_952182.3
- Aligned Length:
- 2313
- Identities:
- 1468
- Gaps:
- 624
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACACCCTGTGTGTCTCTCTGTCCTGCCAGCACTGAGGGCTCATCCCTCTGCAGAGCGCCGGGTCACCGGGAGGA 74
Query 1 ------ATGACCCTCACCCTCTCAGTCCTGATTTGCCTCGGGCTGAGTGTGGGCCCCAGGACCTGCGTGCAGGC 68
|||||.|.|.|||||.|||.||||.|.|||||.|||||||||.||||||||||||||.||.|||||||
Sbjct 75 GACGCCATGACGCCCGCCCTCACAGCCCTGCTCTGCCTTGGGCTGAGTCTGGGCCCCAGGACCCGCATGCAGGC 148
Query 69 AGGCACCCTCCCCAAACCCACCCTCTGGGCTGAGCCAGCCTCTGTGAT-AGCTCGGGGGAAGCCCGTGACCCTC 141
|||..||.||||||||||||||||||||||||||||||.||||||||| |||| ||||||..|||||||||.||
Sbjct 149 AGGGCCCTTCCCCAAACCCACCCTCTGGGCTGAGCCAGGCTCTGTGATCAGCT-GGGGGAGCCCCGTGACCATC 221
Query 142 TGGTGTCAGGGGCCCCTGGAGACTGAGGAGTACCGTCTGGATAAGGAGGGACTCCCATGGGCCC-GGAAGAGAC 214
||||||||.|||..|||||||.|..|||||||||..||||||||.||||||..|||| |.|||| ||.|.|||.
Sbjct 222 TGGTGTCAAGGGAGCCTGGAGGCCCAGGAGTACCAACTGGATAAAGAGGGAAGCCCA-GAGCCCTGGGACAGAA 294
Query 215 AGAACCCACTGGAGCCTGGAGC-----CAAGGCCAAGTTCCACATTCCATCCACGGTGTATGACA-------GT 276
|.|||||||||||.|| | ||||||||..|||..|||.|||||| |||||| .|
Sbjct 295 ATAACCCACTGGAACC-----CAAGAACAAGGCCAGATTCTCCATCCCATCC-------ATGACACAGCACCAT 356
Query 277 GCAGGGCGATACCGCTGCTACTATGAGACCCCTGCAGGCTGGTCAGAGCCCAGTGACCCCCTGGAGCTGGTGGC 350
||||||.|||||||||||.|||||.|.|.|.||||||||||||||||||||||.||||||||||||||||||..
Sbjct 357 GCAGGGAGATACCGCTGCCACTATTACAGCTCTGCAGGCTGGTCAGAGCCCAGCGACCCCCTGGAGCTGGTGAT 430
Query 351 GACAGGATTCTATGCA--GAACCCACTCTTTTAGCCCTGCCGAGTCCTGTGGTGGCCTCAGGAGGAAATGTGAC 422
|||||||||||| || .|||||||.||.|.|||||||||.||.|||||||||||||||||.||.|||.||||
Sbjct 431 GACAGGATTCTA--CAACAAACCCACCCTCTCAGCCCTGCCCAGCCCTGTGGTGGCCTCAGGGGGGAATATGAC 502
Query 423 CCTCCAGTGTGATACACTGGACGGACTTCTCAC--GTTTGTTCTTGTTG-AGGA---AGAACAGAAGCTCCCCA 490
|||||..||||...|||.|.|.||| |.|||| .||||||| ||.|| |||| ||||||..||||||||.
Sbjct 503 CCTCCGATGTGGCTCACAGAAGGGA--TATCACCATTTTGTTC-TGATGAAGGAAGGAGAACACCAGCTCCCCC 573
Query 491 GGACCCTGTACTCACAGAAGCTCCCCAAAGGGCCATCCCAGGCCCTGTTCCCTGTGGGTCCCGTGACCCCCAGC 564
||||||||.||||||||.||||||.||..|||...|.|||||||||||||||||||||.|||||||||||||||
Sbjct 574 GGACCCTGGACTCACAGCAGCTCCACAGTGGGGGGTTCCAGGCCCTGTTCCCTGTGGGCCCCGTGACCCCCAGC 647
Query 565 TGCAGGTGGAGGTTCAGATGCTATTACTATTACAGGAAAAACCCTC-AGGTGTGGTCGAACCCCAGTGACCTCC 637
..||||||||||||||.|||||||||||||||.| .|||.||||.| .|||||||||..||||||||||||.||
Sbjct 648 CACAGGTGGAGGTTCACATGCTATTACTATTATA-CAAACACCCCCTGGGTGTGGTCCCACCCCAGTGACCCCC 720
Query 638 TGGAGATTCTGGTCCCAGGCGTGTCTAGGAAGCCCTCCCTCCTGATCCCGCAGGGCTCTGTCGTGGCCCGCGGA 711
|||||||||||..|.||||||||||||||||||||||||||||||.||.|||||||.|||||.||||||..|
Sbjct 721 TGGAGATTCTGCCCTCAGGCGTGTCTAGGAAGCCCTCCCTCCTGACCCTGCAGGGCCCTGTCCTGGCCCCTG-- 792
Query 712 GGC--AGCCTGACCCTGCAGTGTCGCTCTGATGTCGGCTATGACATATTCGTTCTGTACAAGGAGGGGGAACAT 783
||| |||||||||||.||||||.||||||||||||||||.||||.|||.||||||||.|||||||||||||.|
Sbjct 793 GGCAGAGCCTGACCCTCCAGTGTGGCTCTGATGTCGGCTACGACAGATTTGTTCTGTATAAGGAGGGGGAACGT 866
Query 784 GACCTCGTCCAGGGCTCTGGCCAGCAGCCCCAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAG 857
|||.||.|||||.||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 GACTTCCTCCAGCGCCCTGGCCAGCAGCCCCAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAG 940
Query 858 CCGCTCCCACGGGGGCCAGTACAGATGCTACGGTGCACACAACCTCTCC-CCTAGGTGGTCGGCCCCCAGCGAC 930
|||||||.||||||||||||||||.|||||.|||||||||||||||||| ||.| |||||||||||||||.|||
Sbjct 941 CCGCTCCTACGGGGGCCAGTACAGGTGCTATGGTGCACACAACCTCTCCTCCGA-GTGGTCGGCCCCCAGTGAC 1013
Query 931 CCCCTGGCCATCCTGATCGCAGGACTGATCCCTGACATACCCG---CCCTCTCGGTGCAGCCGGGCCCCAAGGT 1001
|||||||.||||||||||.||||||.||||..||||| ||| ||||.||.|..|||||||||||||..||
Sbjct 1014 CCCCTGGACATCCTGATCACAGGACAGATCTATGACA---CCGTCTCCCTGTCAGCACAGCCGGGCCCCACAGT 1084
Query 1002 GGCCTCAGGAGAGAACGTGACCCTGCTGTGTCAGTCATGGCATCAGATA----GACACTTTCTTTTTGACCAAG 1071
|||||||||||||||||||||||||||||||||||||.|| .|.|| |||||||||.||.|||||||.
Sbjct 1085 GGCCTCAGGAGAGAACGTGACCCTGCTGTGTCAGTCACGG----GGGTATTTTGACACTTTCCTTCTGACCAAA 1154
Query 1072 GAGGGGGCAGCCCATCCCCCGCTGTGTCTAAAGTCAAAGTAC-CAGTCTTATAGACACCAGGCTGAATTCTCCA 1144
||.|||||||||||||||||.|||.||||.|..||||.|||| .|| ||.|||...||||||||||||||.|||
Sbjct 1155 GAAGGGGCAGCCCATCCCCCACTGCGTCTGAGATCAATGTACGGAG-CTCATAAGTACCAGGCTGAATTCCCCA 1227
Query 1145 TGAGTCCTGTGACCTCAGCCCAGGGTGGAACCTACCGATGCTACAGCGCAATCAGGTCCTACCCCTACCTGCTG 1218
||||||||||||||||||||||.|..||.||||||.|.||||||.||.||..|||.|||.|||||.||||||||
Sbjct 1228 TGAGTCCTGTGACCTCAGCCCACGCGGGGACCTACAGGTGCTACGGCTCACGCAGCTCCAACCCCCACCTGCTG 1301
Query 1219 TCCAGCCCTAGTTACCCCCAGGAGCTCGTGGTCTCAGGACCCTCTGG-GGATCCCAGCCTCTCACCTACAGGCT 1291
||...|||.|||.|.||||.|||.|||.||||||||||||.|||||| ||.| ||||||||.||||.||||| .
Sbjct 1302 TCTTTCCCCAGTGAGCCCCTGGAACTCATGGTCTCAGGACACTCTGGAGGCT-CCAGCCTCCCACCCACAGG-G 1373
Query 1292 CCACCC-CCACACCTGGCCCTGAGGACCAGCCCCTCACCCCCACGGGGTTGGATCCCCAGAGTGGTCTGGGAAG 1364
||.||| ||||||| ||||||||||||
Sbjct 1374 CCGCCCTCCACACC------------------------------------------------TGGTCTGGGAAG 1399
Query 1365 GCACCTGGGGGTTGTGACTGGGGTCTCAGTGGCCTTCGTCCTGCTGCTGTTCCTCCTCCTCTTCCTCCTCCTCC 1438
..||||||.||||.|||.|||||||||.||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct 1400 ATACCTGGAGGTTTTGATTGGGGTCTCGGTGGCCTTCGTCCTGCTGCTCTTCCTCCTCCTCTTCCTCCTCCTCC 1473
Query 1439 GACATCGGCATCAGAGCAAACACAGGACATCGG-----------------------CCC--------------- 1474
|||.||.||.|||.|||||||||||||||||.| |||
Sbjct 1474 GACGTCAGCGTCACAGCAAACACAGGACATCTGGGCTGAGACTCTGTCCATCTTCACCCAGACCAGAGAAAGAC 1547
Query 1475 --ATTTCTACCGTCCTGCAGGGGCTGCGGGGCCAGAGCCCAAGGACCAGGGCCTGCAGAAGAGGGCCAGCCCAG 1546
|||||.|.|||||||||||||||||||.|.||||||||||||||..||||||||.||.||||.|||||||||
Sbjct 1548 TGATTTCCAGCGTCCTGCAGGGGCTGCGGAGACAGAGCCCAAGGACAGGGGCCTGCTGAGGAGGTCCAGCCCAG 1621
Query 1547 TTGCTGACATCCAGGAGGAAATTCTCAATGCTGCCGTGAAGGACACACAGCCCAAGGACGGGGTGG-------- 1612
.|||||||.|||||||.||||..|||.|||||||.|||||||||||||||.|..|||||.||||||
Sbjct 1622 CTGCTGACGTCCAGGAAGAAAACCTCTATGCTGCTGTGAAGGACACACAGTCTGAGGACAGGGTGGAGCTGGAC 1695
Query 1613 -------------------------------------------------------------------------- 1612
Sbjct 1696 AGTCAGAGCCCACACGATGAAGACCCCCAGGCAGTGACGTATGCCCCGGTGAAACACTCCAGTCCTAGGAGAGA 1769
Query 1613 -------------------------------------------------------------------------- 1612
Sbjct 1770 AATGGCCTCTCCTCCCTCCTCACTGTCTGGGGAATTCCTGGACACAAAGGACAGACAGGTGGAAGAGGACAGGC 1843
Query 1613 AGATGGATGCTCGGGCTGCTGCATCTGAAGCCCCCCAGGATGTGACCTACGCCCAGCTACACAGCTTGACCCTC 1686
|||||||..||..|||||||||||||||||||.|||||||||||||||||||||||||.||||||||||||||.
Sbjct 1844 AGATGGACACTGAGGCTGCTGCATCTGAAGCCTCCCAGGATGTGACCTACGCCCAGCTGCACAGCTTGACCCTT 1917
Query 1687 AGACGGGAGGCAACTGAGCCTCCTCCATCCCAGGAAAGGGAACCTCCAGCTGAACCCAGCATCTACGCCCCCCT 1760
||||||.|||||||||||||||||||||||||||||.||||||||||||||||.|||||||||||||||.|.||
Sbjct 1918 AGACGGAAGGCAACTGAGCCTCCTCCATCCCAGGAAGGGGAACCTCCAGCTGAGCCCAGCATCTACGCCACTCT 1991
Query 1761 GGCCATCCAC---------------------------------------------------------------- 1770
||||||||||
Sbjct 1992 GGCCATCCACTAGCCCGGGGGGTACGCAGACCCCACACTCAGCAGAAGGAGACTCAGGACTGCTGAAGGCACGG 2065
Query 1771 -------------------------------------------------------------------------- 1770
Sbjct 2066 GAGCTGCCCCCAGTGGACACCAGTGAACCCCAGTCAGCCTGGACCCCTAACACAGACCATGAGGAGACGCTGGG 2139
Query 1771 -------------------------------------------------------------------------- 1770
Sbjct 2140 AACTTGTGGGACTCACCTGACTCAAAGATGACTAATATCGTCCCATTTTGGAAATAAAGCAACAGACTTCTCAA 2213
Query 1771 ------------------- 1770
Sbjct 2214 CAATCAATGAGTTAATAAC 2232
