Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_15013
- Subject:
- XM_011246543.2
- Aligned Length:
- 4210
- Identities:
- 1518
- Gaps:
- 2492
Alignment
Query 1 ATGTCTGCGGAGAGCGGCCCTGGGACGAGATTGAGAAATCTGCCAGTAATGGGGGATGGACTAGAAACTTCCCA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 AATGTCTACAACACAGGCCCAGGCCCAACCCCAGCCAGCCAACGCAGCCAGCACCAACCCCCCGCCCCCAGAGA 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 CCTCCAACCCTAACAAGCCCAAGAGGCAGACCAACCAACTGCAATACCTGCTCAGAGTGGTGCTCAAGACACTA 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 TGGAAACACCAGTTTGCATGGCCTTTCCAGCAGCCTGTGGATGCCGTCAAGCTGAACCTCCCTGATTACTATAA 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 GATCATTAAAACGCCTATGGATATGGGAACAATAAAGAAGCGCTTGGAAAACAACTATTACTGGAATGCTCAGG 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 AATGTATCCAGGACTTCAACACTATGTTTACAAATTGTTACATCTACAACAAGCCTGGAGATGACATAGTCTTA 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 ATGGCAGAAGCTCTGGAAAAGCTCTTCTTGCAAAAAATAAATGAGCTACCCACAGAAGAAACCGAGATCATGAT 518
|||||||||||||||||.||||||||||||||||||||.|||||.||.||.|||||||||||.|||||||||||
Sbjct 1 ATGGCAGAAGCTCTGGAGAAGCTCTTCTTGCAAAAAATCAATGAACTGCCTACAGAAGAAACTGAGATCATGAT 74
Query 519 AGTCCAGGCAAAAGGAAGAGGACGTGGGAGGAAAGAAACAG---GGACAGCAAAACCTGGCGTTTCCACGGTAC 589
||||||||||||||||||||||||.|||||||||||||||| ||.|||||||.|||||.||.||||||||||
Sbjct 75 AGTCCAGGCAAAAGGAAGAGGACGAGGGAGGAAAGAAACAGGTAGGGCAGCAAAGCCTGGTGTATCCACGGTAC 148
Query 590 CAAACACAACTCAAGCATCGACTCCTCCGCAGACCCAGACCCCTCAGCCGAA---TCCTCCTCCTGTGCAGGCC 660
|||||||||||||||||||.|||.||||||||||||||||.|||||||.||| ||||||.||||||||||||
Sbjct 149 CAAACACAACTCAAGCATCAACTTCTCCGCAGACCCAGACGCCTCAGCAGAACCCTCCTCCACCTGTGCAGGCC 222
Query 661 ACGCCTCACCCCTTCCCTGCCGTCACCCCGGACCTCATCGTCCAGACCCCTGTCATGACAGTGGTGCCTCCCCA 734
||..||||||||||.|||||.||||||||.||||||||.|.||||.|.||||||||||||.|||||||.||.||
Sbjct 223 ACAACTCACCCCTTTCCTGCTGTCACCCCAGACCTCATTGCCCAGCCTCCTGTCATGACAATGGTGCCCCCTCA 296
Query 735 GCCACTGCAGACGCC--CCCCGCCAGTGCCCCCCCAGCCACAACCCCAACCCGCTTCAGCTCCCCAGCCCGTAC 806
||||||.|||||.|| |.||| ||.|||||||||||||.|||||.|||.|||.|||.|||.|||||.||.|
Sbjct 297 GCCACTTCAGACTCCTTCACCG---GTACCCCCCCAGCCACCACCCCCACCTGCTCCAGTTCCACAGCCTGTGC 367
Query 807 AGAGCCACCCACCCATCATCGCGGCCACCCCACAGCCTGTGAAGACAAAGAAGGGAGTGAAGAGGAAAGCAGAC 880
||||.|||||.||||||||.|||.|||||||.||||||||||||||||||||.||.|||||||||||||||||.
Sbjct 368 AGAGTCACCCGCCCATCATTGCGACCACCCCCCAGCCTGTGAAGACAAAGAAAGGGGTGAAGAGGAAAGCAGAT 441
Query 881 ACCACCACCCCCACCACCATTGACCCCATTCACGAGCCACCCTCGCTGCCCCCGGAGCCCAAGACCACCAAGCT 954
|||||||||||.||||||||.|||||||||||.|||||||||||.|||.||||.||||||||||||.|||||||
Sbjct 442 ACCACCACCCCTACCACCATCGACCCCATTCATGAGCCACCCTCACTGGCCCCAGAGCCCAAGACCGCCAAGCT 515
Query 955 GGGCCAGCGGCGGGAGAGCAGCCGGCCTGTGAAACCTCCAAAGAAGGACGTGCCCGACTCTCAGCAGCACCCAG 1028
|||.|..|||||||||||||||.|.||||||||.||||||||||||||.||.||.|||||.|||||||||||||
Sbjct 516 GGGTCCTCGGCGGGAGAGCAGCAGACCTGTGAAGCCTCCAAAGAAGGATGTACCGGACTCACAGCAGCACCCAG 589
Query 1029 CACCAGAGAAGAGCAGCAAGGTCTCGGAGCAGCTCAAGTGCTGCAGCGGCATCCTCAAGGAGATGTTTGCCAAG 1102
..||||||||||||||||||.||||.||||||||.|||||||||||.|||||||||||||||||||||||||||
Sbjct 590 GGCCAGAGAAGAGCAGCAAGATCTCTGAGCAGCTAAAGTGCTGCAGTGGCATCCTCAAGGAGATGTTTGCCAAG 663
Query 1103 AAGCACGCCGCCTACGCCTGGCCCTTCTACAAGCCTGTGGACGTGGAGGCACTGGGCCTACACGACTACTGTGA 1176
||.||.||.|||||.||||||||.|||||||||||||||||.||||||||||||||.||.||||||||||||||
Sbjct 664 AAACATGCTGCCTATGCCTGGCCTTTCTACAAGCCTGTGGATGTGGAGGCACTGGGTCTGCACGACTACTGTGA 737
Query 1177 CATCATCAAGCACCCCATGGACATGAGCACAATCAAGTCTAAACTGGAGGCCCGTGAGTACCGTGATGCTCAGG 1250
|||||||||.||.||||||||||||||||||||||||||||||||.|||.||||.||||||.|.|||||.||||
Sbjct 738 CATCATCAAACATCCCATGGACATGAGCACAATCAAGTCTAAACTAGAGTCCCGAGAGTACAGAGATGCCCAGG 811
Query 1251 AGTTTGGTGCTGACGTCCGATTGATGTTCTCCAACTGCTATAAGTACAACCCTCCTGACCATGAGGTGGTGGCC 1324
|.|||||||||||.||||||||||||||||||||||||||.|||||||||||.|||||||||||.|||||.|||
Sbjct 812 AATTTGGTGCTGATGTCCGATTGATGTTCTCCAACTGCTACAAGTACAACCCCCCTGACCATGAAGTGGTAGCC 885
Query 1325 ATGGCCCGCAAGCTCCAGGATGTGTTCGAAATGCGCTTTGCCAAGATGCCGGACGAGCCTGAGGAGCCAGTGGT 1398
|||||.||.||.||||||||||||||.|||||||||||||||||||||||.||.||||||||.||||||||.||
Sbjct 886 ATGGCTCGAAAACTCCAGGATGTGTTTGAAATGCGCTTTGCCAAGATGCCTGATGAGCCTGAAGAGCCAGTTGT 959
Query 1399 GGCCGTGTCCTCCCCCGGCAGTGCTCCCTCCCACCAAGGTTGTGGCCCCGCCCTCATCCCAGCGACAGCAGCAG 1472
..|.||||||| |.||.|||||||..||.||.||.|||||.||.|||||.||||||| |.||.|||||||||||
Sbjct 960 TACAGTGTCCT-CTCCTGCAGTGCCACCCCCTACAAAGGTGGTAGCCCCACCCTCAT-CTAGTGACAGCAGCAG 1031
Query 1473 CGATAGCTCCTCGGACAGTGACAGTTCGACTGATGACTCTGAGGAGGAGCGAGCCCAGCGGCTGGCTGAGCTCC 1546
|||.||.||.||.|||||.||||||||.|||||.|||||||||||.|||||||||||||||||||||||.||||
Sbjct 1032 CGACAGTTCTTCCGACAGCGACAGTTCCACTGACGACTCTGAGGAAGAGCGAGCCCAGCGGCTGGCTGAACTCC 1105
Query 1547 AGGAGCAGCTCAAAGCCGTGCACGAGCAGCTTGCAGCCCTCTCTCAGCCCCAGCAGAACAAACCAAAGAAAAAG 1620
||||.||||||||.||||||||.||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 1106 AGGAACAGCTCAAGGCCGTGCATGAGCAGCTTGCAGCCCTCTCACAGCCCCAGCAGAACAAACCAAAGAAAAAG 1179
Query 1621 GAGAAAGACAAGAAGGAAAAGAAAAAAGAAAAGCACAAAAGGAAAGAGGAAGTGGAAGAGAATAAAAAAAGCAA 1694
|||||.||||||||||||||||||||.|||||||||||||.||||||.||||||||.||.||||||||||||||
Sbjct 1180 GAGAAGGACAAGAAGGAAAAGAAAAAGGAAAAGCACAAAAAGAAAGAAGAAGTGGAGGAAAATAAAAAAAGCAA 1253
Query 1695 AGCCAAGGAACCTCCTCCTAAAAAGACGAAGAAAAATAATAGCAGCAACAGCAATGTGAGCAAGAAGGAGCCAG 1768
|.|||||||||.||||||.||||||||.|||||||||||.|||||||||||||||||||||||||||||.||||
Sbjct 1254 AACCAAGGAACTTCCTCCCAAAAAGACAAAGAAAAATAACAGCAGCAACAGCAATGTGAGCAAGAAGGAACCAG 1327
Query 1769 CGCCCATGAAGAGCAAGCCCCCTCCCACGTATGAGTCGGAGGAAGAGGACAAGTGCAAGCCTATGTCCTATGAG 1842
..||||.|||||.||||||.||||||||.|||||.||.||.||.|||||.|||||.|||||.|||||.||||||
Sbjct 1328 TACCCACGAAGACCAAGCCGCCTCCCACATATGAATCAGAAGAGGAGGATAAGTGTAAGCCCATGTCTTATGAG 1401
Query 1843 GAGAAGCGGCAGCTCAGCTTGGACATCAACAAGCTCCCCGGCGAGAAGCTGGGCCGCGTGGTGCACATCATCCA 1916
||||||||||||||.||..|.||.||||||||.||.||.||.||||||||.|||||.||.||.|||||.||.||
Sbjct 1402 GAGAAGCGGCAGCTAAGTCTAGATATCAACAAACTTCCTGGTGAGAAGCTAGGCCGTGTAGTACACATAATTCA 1475
Query 1917 GTCACGGGAGCCCTCCCTGAAGAATTCCAACCCCGACGAGATTGAAATCGACTTTGAGACCCTGAAGCCGTCCA 1990
||||.||||.||.||.||.||.||.|||||||||||.||||||||.||.||||||||||||||||||||.||.|
Sbjct 1476 GTCAAGGGAACCATCACTTAAAAACTCCAACCCCGATGAGATTGAGATTGACTTTGAGACCCTGAAGCCATCTA 1549
Query 1991 CACTGCGTGAGCTGGAGCGCTATGTCACCTCCTGTTTGCGGAAGAAAAGGAAACCTCAAGCTGAGAAAGTTGAT 2064
||||.||.|||.|||||||.||||||||||||||||||||||||||||||||||||||||||||.||||||||.
Sbjct 1550 CACTACGAGAGTTGGAGCGATATGTCACCTCCTGTTTGCGGAAGAAAAGGAAACCTCAAGCTGAAAAAGTTGAC 1623
Query 2065 GTGATTGCCGGCTCCTCCAAGATGAAGGGCTTCTCGTCCTCAGAGTCGGAGAGCTCCAGTGAGTCCAGCTCCTC 2138
||||||||.||.||.||||||||||||||.|||||.|||||.||||||||||||.||||.||.|||||||||||
Sbjct 1624 GTGATTGCTGGTTCTTCCAAGATGAAGGGATTCTCATCCTCTGAGTCGGAGAGCACCAGCGAATCCAGCTCCTC 1697
Query 2139 TGACAGCGAAGACTCCGAAACA-----GGTCCTGCC-------------------------------------- 2169
||||||.||||||||.|||||| || ||.||
Sbjct 1698 TGACAGTGAAGACTCTGAAACAGAGATGG--CTCCCAAGTCAAAAAAGAAGGGGCACACTGGGAGGGACCAGAA 1769
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 1770 AAAGCATCATCACCATCACCATCCACAGATGCAGCCAGCCCCAGCTCCTGTGCCCCAGCAGCCGCCCCCACCTC 1843
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 1844 CACAGCAGCCTCCTCCACCCCCACCTCCGCAGCAGCAGCAGCAGCAACCTCCACCCCCACCACCTCCGCCCTCC 1917
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 1918 ATGCCACAGCAGACTGCCCCAGCGATGAAGTCCTCGCCCCCACCCTTCATCACTGCCCAGGTCCCCGTCCTGGA 1991
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 1992 ACCACAGCTGCCAGGCAGTGTCTTTGACCCTATTGGCCACTTCACCCAGCCCATCTTGCACCTGCCGCAGCCGG 2065
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 2066 AGCTGCCTCCTCACCTGCCCCAGCCACCTGAGCACAGCACTCCACCCCATCTCAACCAGCATGCTGTGGTCTCT 2139
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 2140 CCTCCAGCTTTGCACAATGCGCTGCCCCAACAGCCATCTCGGCCCAGTAACCGAGCTGCTGCTCTGCCCCCAAA 2213
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 2214 GCCTACCCGACCCCCAGCTGTGTCCCCTGCCCTGGCCCAGCCCCCCCTGCTCCCACAACCACCAATGGCTCAGC 2287
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 2288 CCCCCCAAGTGCTGCTGGAGGATGAAGAGCCACCTGCCCCACCCCTCACCTCCATGCAGATGCAGTTGTACCTA 2361
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 2362 CAGCAGCTGCAGAAGGTGCAGCCTCCCACACCACTACTCCCTTCCGTGAAGGTGCAGTCCCAACCCCCACCGCC 2435
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 2436 TTTGCCGCCTCCACCCCACCCTTCTGTGCAGCAGCAGCAGCTCCAGCCACAGCCACCGCCACCCCCACCTCCTC 2509
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 2510 AGCCACAGCCACCACCCCAGCAACAACACCAGCCTCCACCACGACCAGTTCACTTGCCATCCATGCCCTTTTCT 2583
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 2584 GCTCATATTCAGCAGCCCCCACCACCCCCAGGACAGCAACCTACTCACCCACCCCCAGGACAGCAGCCCCCACC 2657
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 2658 ACCACAGCCTGCCAAGCCCCAGCAAGTCATCCAGCATCACCCTTCCCCCCGGCACCACAAGTCAGACCCCTACT 2731
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 2732 CAGCTGGTCATCTTCGTGAGGCTCCCTCTCCGCTTATGATACATTCCCCTCAGATGCCACAGTTCCAGAGCCTG 2805
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 2806 ACCCATCAGTCTCCTCCCCAGCAAAACGTCCAGCCTAAGAAGCAGGTAAAGGGCAGGGCTGAGCCACAGCCACC 2879
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 2880 AGGGCCAGTCATGGGCCAAGGCCAGGGATGCCCACCTGCCTCACCGGCTGCCGTGCCTATGCTGTCCCAGGAGC 2953
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 2954 TGCGACCACCTTCAGTCGTCCAGCCCCAGCCCCTGGTGGTAGTAAAGGAGGAGAAGATTCACTCACCAATCATT 3027
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 3028 CGCAGCGAGCCTTTCAGCACCTCACTTCGACCAGAGCCCCCCAAGCACCCAGAGAACATCAAGGCCCCAGTCCA 3101
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 3102 CCTGCCCCAGCGGCCTGAGATGAAGCCTGTAGACATAGGGAGGCCTGTGATCCGGCCTCCAGAGCAGAGTGCAC 3175
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 3176 CCCCACCAGGGGCCCCTGACAAGGACAAACAGAAGCAGGAGCCAAAAACACCAGTGGCACCCAAAAAGGACCTG 3249
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 3250 AAAATTAAGAACATGGGCTCCTGGGCCAGCCTGGTACAGAAGCATCCGACCACCCCATCCTCCACAGCCAAGTC 3323
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 3324 CTCAAGTGACAGCTTTGAGCATTTCCGCCGTGCTGCTCGGGAGAAGGAGGAGAGGGAAAAGGCCCTGAAGGCTC 3397
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 3398 AGGCTGAGCATGCAGAGAAGGAGAAGGAGCGGCTGAGGCAGGAGCGCATGAGGAGCCGAGAGGATGAAGATGCG 3471
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 3472 CTGGAACAGGCACGTCGAGCCCATGAGGAGGCACGACGGCGCCAGGAGCAGCAGCAGCAGCAGCAGCAGCAGAG 3545
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 3546 ACAGGAGCAGCAGCAGCAGCAGCAGCAGGCAGCTGCTGTGGCCGCTGCCTCTGCCCCCCAGGCCCAGAGCTCCC 3619
Query 2170 -------------------------------------------------------------------------- 2169
Sbjct 3620 AGCCCCAGTCTATGCTGGACCAGCAGAGGGAGTTGGCCCGGAAACGAGAGCAGGAGCGGAGGCGCAGGGAGGCA 3693
Query 2170 ------------------------------------------------------------------ 2169
Sbjct 3694 ATGGCAGCTACAATTGACATGAATTTCCAGAGTGATCTTTTGTCAATATTTGAAGAAAATCTTTTT 3759
