Construct: ORF ccsbBroadEn_15013

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018891.1_s300c1, BRDN0000458187
DNA Barcode:
None
Epitope Tag:
None
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
BRD4 (23476)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23476 BRD4 bromodomain containing 4 NM_014299.2 99.7% 36.2% (many diffs)
2 human 23476 BRD4 bromodomain containing 4 XM_011527856.3 99.7% 36.2% (many diffs)
3 human 23476 BRD4 bromodomain containing 4 NM_001330384.2 90.5% 32.9% (many diffs)
4 human 23476 BRD4 bromodomain containing 4 NM_058243.2 52.7% 19.2% (many diffs)
5 human 23476 BRD4 bromodomain containing 4 XM_011527854.2 52.7% 19.2% (many diffs)
6 mouse 57261 Brd4 bromodomain containing 4 NM_198094.2 89.5% 34.9% (many diffs)
7 mouse 57261 Brd4 bromodomain containing 4 XM_006524695.3 89.3% 34.8% (many diffs)
8 mouse 57261 Brd4 bromodomain containing 4 XM_006524691.1 47.2% 18.5% (many diffs)
9 mouse 57261 Brd4 bromodomain containing 4 XM_006524690.2 47.2% 18.5% (many diffs)
10 mouse 57261 Brd4 bromodomain containing 4 NM_020508.4 46.1% 18.1% (many diffs)
11 mouse 57261 Brd4 bromodomain containing 4 XM_006524688.1 46.1% 18.1% (many diffs)
12 mouse 57261 Brd4 bromodomain containing 4 XM_006524689.2 46.1% 18.1% (many diffs)
13 mouse 57261 Brd4 bromodomain containing 4 NM_001286630.1 46.1% 18.1% (many diffs)
14 mouse 57261 Brd4 bromodomain containing 4 XM_006524683.2 46.1% 18.1% (many diffs)
15 mouse 57261 Brd4 bromodomain containing 4 XM_006524684.2 46.1% 18.1% (many diffs)
16 mouse 57261 Brd4 bromodomain containing 4 XM_006524685.1 46.1% 18.1% (many diffs)
17 mouse 57261 Brd4 bromodomain containing 4 XM_006524686.1 46.1% 18.1% (many diffs)
18 mouse 57261 Brd4 bromodomain containing 4 XM_006524687.2 46.1% 18.1% (many diffs)
19 mouse 57261 Brd4 bromodomain containing 4 XM_006524693.2 36% 7.6% (many diffs)
20 mouse 57261 Brd4 bromodomain containing 4 XM_011246543.2 36% 7.6% (many diffs)
21 mouse 57261 Brd4 bromodomain containing 4 XM_017317588.1 36% 7.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
99
ORF end:
999
ORF length:
900
Sequence:
1AACGGATTTT ATTTTGACTG ATAGTGACCT GTTCGTTGCA ACAAATTGAT GAGCAATGCT
61TTTTTATAAT GCCAACTTTG TACAAAAAAG TTGGCACCAT GTCTGCGGAG AGCGGCCCTG
121GGACGAGATT GAGAAATCTG CCAGTAATGG GGGATGGACT AGAAACTTCC CAAATGTCTA
181CAACACAGGC CCAGGCCCAA CCCCAGCCAG CCAACGCAGC CAGCACCAAC CCCCCGCCCC
241CAGAGACCTC CAACCCTAAC AAGCCCAAGA GGCAGACCAA CCAACTGCAA TACCTGCTCA
301GAGTGGTGCT CAAGACACTA TGGAAACACC AGTTTGCATG GCCTTTCCAG CAGCCTGTGG
361ATGCCGTCAA GCTGAACCTC CCTGATTACT ATAAGATCAT TAAAACGCCT ATGGATATGG
421GAACAATAAA GAAGCGCTTG GAAAACAACT ATTACTGGAA TGCTCAGGAA TGTATCCAGG
481ACTTCAACAC TATGTTTACA AATTGTTACA TCTACAACAA GCCTGGAGAT GACATAGTCT
541TAATGGCAGA AGCTCTGGAA AAGCTCTTCT TGCAAAAAAT AAATGAGCTA CCCACAGAAG
601AAACCGAGAT CATGATAGTC CAGGCAAAAG GAAGAGGACG TGGGAGGAAA GAAACAGGGA
661CAGCAAAACC TGGCGTTTCC ACGGTACCAA ACACAACTCA AGCATCGACT CCTCCGCAGA
721CCCAGACCCC TCAGCCGAAT CCTCCTCCTG TGCAGGCCAC GCCTCACCCC TTCCCTGCCG
781TCACCCCGGA CCTCATCGTC CAGACCCCTG TCATGACAGT GGTGCCTCCC CAGCCACTGC
841AGACGCCCCC CGCCAGTGCC CCCCCAGCCA CAACCCCAAC CCGCTTCagc tccccagccc
901gtacagagcc acccacccat catcgcggcc accccacagc ctgtgaagac aaagaaggga
961gtgaagagga aagcagacac caccaccccc accaccattg accccattca cgagccaccc
1021tcgctgcccc cggagcccaa gaccaccaag ctgggccagc ggcgggagag cagccggcct
1081gtgaaacctc caaagaagga cgtgcccgac tctcagcagc acccagcacc agagaagagc
1141agcaaggtct cggagcagct caagtgctgc agcggcatcc tcaaggagat gtttgccaag
1201aagcacgccg cctacgcctg gcccttctac aagcctgtgg acgtggaggc actgggccta
1261cacgactact gtgacatcat caagcacccc atggacatga gcacaatcaa gtctaaactg
1321gaggcccgtg agtaccgtga tgctcaggag tttggtgctg acgtccgatt gatgttctcc
1381aactgctata agtacaaccc tcctgaccat gaggtggtgg ccatggcccg caagctccag
1441gatgtgttcg aaatgcgctt tgccaagatg ccggacgagc ctgaggagcc agtggtggcc
1501gtGTCCTCCC CCGGCAGTGC TCCCTCCCAC CAAGGTTGTG GCCCCGCCCT CATCCCAGCG
1561ACAGCAGCAG CGATAGCTCC TCGGACAGTG ACAGTTCGAC TGATGACTCT GAGGAGGAGC
1621GAGCCCAGCG GCTGGCTGAG CTCCAGGAGC AGCTCAAAGC CGTGCACGAG CAGCTTGCAG
1681CCCTCTCTCA GCCCCAGCAG AACAAACCAA AGAAAAAGGA GAAAGACAAG AAGGAAAAGA
1741AAAAAGAAAA GCACAAAAGG AAAGAGGAAG TGGAAGAGAA TAAAAAAAGC AAAGCCAAGG
1801AACCTCCTCC TAAAAAGACG AAGAAAAATA ATAGCAGCAA CAGCAATGTG AGCAAGAAGG
1861AGCCAGCGCC CATGAAGAGC AAGCCCCCTC CCACGTATGA GTCGGAGGAA GAGGACAAGT
1921GCAAGCCTAT GTCCTATGAG GAGAAGCGGC AGCTCAGCTT GGACATCAAC AAGCTCCCCG
1981GCGAGAAGCT GGGCCGCGTG GTGCACATCA TCCAGTCACG GGAGCCCTCC CTGAAGAATT
2041CCAACCCCGA CGAGATTGAA ATCGACTTTG AGACCCTGAA GCCGTCCACA CTGCGTGAGC
2101TGGAGCGCTA TGTCACCTCC TGTTTGCGGA AGAAAAGGAA ACCTCAAGCT GAGAAAGTTG
2161ATGTGATTGC CGGCTCCTCC AAGATGAAGG GCTTCTCGTC CTCAGAGTCG GAGAGCTCCA
2221GTGAGTCCAG CTCCTCTGAC AGCGAAGACT CCGAAACAGG TCCTGCCTTG CCAACTTTCT
2281TGTACAAAGT TGGCATTATA AGAAAGCATT GCTTATCAAT TTGTTGCAAC GAACAGGTCA
2341CTATCAGTCA AAATAAAATC ATTATTGCCA TCCCAGCCCG CAA

Download FASTA (ORF) (Full)

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