Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_15036
- Subject:
- XM_017020541.1
- Aligned Length:
- 3021
- Identities:
- 1343
- Gaps:
- 1570
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGAGGAAACGGGCACTCAAAGAGATGGCTGGCCGAGCTCTCAAGCAGACTGGCAGCAGGAGCATCGAGGCCGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCTGGAGTACATCAGCAAGATGGGCTACCTGGACCCGAGGAATGAGCAGATTGTGCGGGTCATTAAGCAGACCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCCCAGGAAAGGGGCTCATGCCAACCCCAGTGACGCGGAGGCCCAGCTTCGAAGGAACCGGCGATTCGTTTGCG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCCTACCACCAGCTGAGCGGTACCCCCTACGAGGGCCCAAGCTTCGGCGCTGACGGCCCCACGGCGCTGGAGGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GATGCCGCGGCCGTACGTGGACTACCTTTTCCCCGGAGTCGGCCCCCACGGGCCCGGCCACCAGCACCAGCACC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CACCCAAGGGCTACGGTGCCAGCGTAGAGGCAGCAGGGGCACACTTCCCGCTGCAGGGCGCGCACTACGGGCGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCGCACCTGCTGGTGCCTGGGGAACCCCTGGGCTACGGAGTGCAGCGCAGCCCCTCCTTCCAGAGCAAGACGCC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCCGGAGACCGGGGGTTACGCCAGCCTGCCCACGAAGGGCCAGGGAGGACCGCCAGGCGCCGGCCTCGCTTTCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CACCCCCTGCCGCCGGGCTCTACGTGCCGCACCCACACCACAAGCAGGCCGGTCCCGCGGCCCACCAGCTGCAT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GTGCTGGGCTCCCGCAGCCAGGTGTTCGCCAGCGACAGCCCCCCGCAGAGCCTGCTCACTCCCTCGCGGAACAG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CCTCAACGTGGACCTGTATGAATTGGGCAGCACCTCCGTCCAGCAGTGGCCGGCTGCCACCCTGGCCCGCCGGG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ACTCCCTGCAGAAGCCGGGCCTGGAGGCGCCGCCGCGCGCGCACGTGGCCTTCCGGCCTGACTGCCCAGTGCCC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AGCAGGACCAACTCCTTCAACAGCCACCAGCCGCGGCCCGGTCCGCCTGGCAAGGCCGAGCCCTCCCTGCCCGC 962
Query 1 ----------------------------------------------------------------ATGAGGCCAA 10
.|||||||..
Sbjct 963 CCCCAACACCGTGACGGCTGTCACGGCCGCGCACATCTTGCACCCGGTGAAGAGCGTGCGTGTGCTGAGGCCGG 1036
Query 11 AG-------------------------ACTTTTCCTG-----CCACGACTTATTCTGGAAATAG---------- 44
|| ||....|||| ||.||.|| |
Sbjct 1037 AGCCGCAGACGGCTGTGGGGCCCTCGCACCCCGCCTGGGTGCCCGCGCCT-------------GCCCCGGCCCC 1097
Query 45 ----------------CCGGCAGC----------GACTGCAAGAGATTCGTGAGGGGTTAAAGCA-GCCATCCA 91
|||||.|| |||..|||| |||| |||| |||
Sbjct 1098 CGCCCCCGCCCCCGCCCCGGCTGCGGAGGGCTTGGACGCCAAG--------GAGG------AGCATGCC----- 1152
Query 92 AGTCT--------TCGGTTCAGG-GGCTACCCGC----------------AGGACCAAACAGTGA------CAC 134
|| .|||..|||| |.||.||||| |||.|||.||.| || |.|
Sbjct 1153 ---CTGGCGCTGGGCGGCGCAGGCGCCTTCCCGCTGGACGTGGAGTACGGAGGCCCAGACCG-GAGGTGCCCGC 1222
Query 135 TTC----------------CCTG--GATGC-CA--AAGTCCTGGGGAGCAAAGATGCCACCAGG-CAGC---AG 183
.|| |||| |.||| || ||||| |||||| .|.|.|||.|| |||| .|
Sbjct 1223 CTCCGCCCTACCCGAAGCACCTGCTGCTGCGCAGCAAGTC----GGAGCA---GTACGACCTGGACAGCCTGTG 1289
Query 184 CAGCAG--ATG----AGAGCC---------ACCCCAA--AGTTCG--------GACCTTATCAG--AAAGCCTT 230
| |||| ||| |||||| .|||||| ||..|| |||...|.|.| |||||...
Sbjct 1290 C-GCAGGCATGGAGCAGAGCCTCCGTGCGGGCCCCAACGAGCCCGAGGGCGGCGACAAGAGCCGCAAAAGCGCC 1362
Query 231 GAGGG---------------------AAATCAGAT--ATTCCT----TGTTGCCTTTTGCTAA----------- 266
.|||| |||.||||| |..||| .|||.||.|..||.||
Sbjct 1363 AAGGGGGACAAAGGCGGAAAGGATAAAAAGCAGATTCAGACCTCTCCCGTTCCCGTCCGCAAAAACAGCAGAGA 1436
Query 267 ------------TGAATCGGGCA---------------------CCTCT--------------GCAGC---TGC 290
.||.||..||| |||.| ||||| ||.
Sbjct 1437 CGAAGAGAAGAGAGAGTCACGCATCAAGAGCTACTCGCCATACGCCTTTAAGTTCTTCATGGAGCAGCACGTGG 1510
Query 291 AGAA-GTGAACCGGCAAATGCT----GCAGGAACTGGTGAA-CGCAGGATGC-----GACCAGGAGATGGCTGG 353
|||| || |..||||..|| ||||.| |||.|| ||.|||.||| ||.||.||.|||||
Sbjct 1511 AGAATGT----CATCAAAACCTACCAGCAGAA---GGTTAACCGGAGGCTGCAGCTGGAGCAAGAAATGGC--- 1574
Query 354 CCGAGCT---CTC----AAGCAGACTGGCAGCAGGAGCATCGAGGCCG----CCCT---------GGAG----- 402
|..|||| ||| ||||.| |||||||||| ||.||.| .||| .|||
Sbjct 1575 CAAAGCTGGACTCTGTGAAGCTG------AGCAGGAGCA--GATGCGGAAGATCCTCTACCAGAAAGAGTCTAA 1640
Query 403 -TACATCAG------------CAAGATG-----GGCTACCTG--------------GACCCGAGGAAT------ 438
||||.||| ||||||| |.||| || .||||..||.||
Sbjct 1641 TTACAACAGGTTAAAGAGGGCCAAGATGGACAAGTCTA--TGTTTGTCAAGATCAAAACCCTGGGGATCGGTGC 1712
Query 439 -----GAGCAGATTGTGC-------------GGGTCATT---------------AAGCAGACC----------- 468
|||.|| ||||| .||.||.| |.|.|||||
Sbjct 1713 CTTTGGAGAAG--TGTGCCTTGCTTGTAAGGTGGACACTCACGCCCTGTACGCCATGAAGACCCTAAGGAAAAA 1784
Query 469 -----TCC----CCAGGAA--AGG-GGCTCATGCCAACCCC---AGTGAC------GCGGAGGCCCAG------ 515
||| || |||| ||| |||.||.|.|||..|| ||.||| ||.|||| |||
Sbjct 1785 GGATGTCCTGAACC-GGAATCAGGTGGCCCACGTCAAGGCCGAGAGGGACATCCTGGCCGAGG--CAGACAATG 1855
Query 516 -------------------------CTTCGAAG----------------------------------------- 523
||||.|||
Sbjct 1856 AGTGGGTGGTCAAACTCTACTACTCCTTCCAAGACAAAGACAGCCTGTACTTTGTGATGGACTACATCCCTGGT 1929
Query 524 -----------GAACCGGC-GATTCGTTTG--CGTCCTTCCCTGAGCACCTGGCCCGGTTCTACATCGCAGAGC 583
||.||.|| |||.||..|| .|| ||||||||||||||||||||||||||||||||||||||
Sbjct 1930 GGGGACATGATGAGCCTGCTGATCCGGATGGAGGT-CTTCCCTGAGCACCTGGCCCGGTTCTACATCGCAGAGC 2002
Query 584 TGACTTTGGCCATTGAGAGTGTCCACAAGATGGGCTTCATCCACCGAGACATCAAGCCTGATAACATTTTGATA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2003 TGACTTTGGCCATTGAGAGTGTCCACAAGATGGGCTTCATCCACCGAGACATCAAGCCTGATAACATTTTGATA 2076
Query 658 GATCTGGATGGTCACATTAAACTCACAGATTTCGGCCTCTGCACTGGGTTCAG--TGACTCACAANTCCCAAAN 729
||||||||||||||||||||||||||||||||||||||||||||||||||||| .|||||||||.||| ||.
Sbjct 2077 GATCTGGATGGTCACATTAAACTCACAGATTTCGGCCTCTGCACTGGGTTCAGGTGGACTCACAATTCC--AAA 2148
Query 730 TATTNCCAGAAANGNAGCCATGTCAGACAGGACAGCATGGAGCCCAGCGACNTTCTGGGGATGATGTGGTTCTA 803
||||.|||||||.|.||||||||||||||||||||||||||||||||||||. ||| ||||||||||| ||||
Sbjct 2149 TATTACCAGAAAGGGAGCCATGTCAGACAGGACAGCATGGAGCCCAGCGACC-TCT-GGGATGATGTG--TCTA 2218
Query 804 NCNGGTCGGTGTGGGGACAGGCTG-AGACCCCTAGAGCAGAGGGCGCGGAAGCAGCACCAGAGGTGCCTGGCAC 876
.|. |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2219 ACT-GTCGGTGTGGGGACAGGCTGAAGA-CCCTAGAGCAGAGGGCGCGGAAGCAGCACCAGAGGTGCCTGGCAC 2290
Query 877 ATTCACTGGTGGGGACTCCAAACTACATCGCACCCGAGGTGCTCCTCCGCAAAGGGTACACTCAACTCTGTGAC 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2291 ATTCACTGGTGGGGACTCCAAACTACATCGCACCCGAGGTGCTCCTCCGCAAAGGGTACACTCAACTCTGTGAC 2364
Query 951 TGGTGGAGTGTTGGAGTGATTCTCTTCGAGATGCTGGTGGGGCAGCCGCCCTTTTTGGCACCTACTCCCACAGA 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2365 TGGTGGAGTGTTGGAGTGATTCTCTTCGAGATGCTGGTGGGGCAGCCGCCCTTTTTGGCACCTACTCCCACAGA 2438
Query 1025 AACCCAGCTGAAGGTGATCAACTGGGAGAACACGCTCCACATTCCAGCCCAGGTGAAGCTGAGCCCTGAGGCCA 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2439 AACCCAGCTGAAGGTGATCAACTGGGAGAACACGCTCCACATTCCAGCCCAGGTGAAGCTGAGCCCTGAGGCCA 2512
Query 1099 GGGACCTCATCACCAAGCTGTGCTGCTCCGCAGACCACCGCCTGGGGCGGAATGGGGCCGATGACCTGAAGGCC 1172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2513 GGGACCTCATCACCAAGCTGTGCTGCTCCGCAGACCACCGCCTGGGGCGGAATGGGGCCGATGACCTGAAGGCC 2586
Query 1173 CACCCCTTCTTCAGCGCCATTGACTTCTCCAGTGACATCCGGAAGCAGCCAGCCCCCTACGTTCCCACCATCAG 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2587 CACCCCTTCTTCAGCGCCATTGACTTCTCCAGTGACATCCGGAAGCAGCCAGCCCCCTACGTTCCCACCATCAG 2660
Query 1247 CCACCCCATGGACACCTCGAATTTCGACCCCGTAGATGAAGAAAGCCCTTGGAACGATGCCAGCGAAGGTAGCA 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2661 CCACCCCATGGACACCTCGAATTTCGACCCCGTAGATGAAGAAAGCCCTTGGAACGATGCCAGCGAAGGTAGCA 2734
Query 1321 CCAAGGCCTGGGACACACTCACCTCGCCCAATAACAAGCATCCTGAGCACGCATTTTACGAATTCACCTTCCGA 1394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2735 CCAAGGCCTGGGACACACTCACCTCGCCCAATAACAAGCATCCTGAGCACGCATTTTACGAATTCACCTTCCGA 2808
Query 1395 AGGTTCTTTGATGACAATGGCTACCCCTTTCGATGCCCAAAGCCTTCAGGAGCAGAAGCTTCACAGGCTGAGAG 1468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2809 AGGTTCTTTGATGACAATGGCTACCCCTTTCGATGCCCAAAGCCTTCAGGAGCAGAAGCTTCACAGGCTGAGAG 2882
Query 1469 CTCAGATTTAGAAAGCTCTGATCTGGTGGATCAGACTGAAGGCTGCCAGCCTGTGTACGTG 1529
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2883 CTCAGATTTAGAAAGCTCTGATCTGGTGGATCAGACTGAAGGCTGCCAGCCTGTGTACGTG 2943
