Construct: ORF ccsbBroadEn_15036
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018921.1_s300c1, BRDN0000458217
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- LATS2 (26524)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26524 | LATS2 | large tumor suppressor kina... | NM_014572.3 | 46.1% | 23.1% | (many diffs) |
| 2 | human | 26524 | LATS2 | large tumor suppressor kina... | XM_005266342.1 | 46.1% | 23.1% | (many diffs) |
| 3 | human | 26524 | LATS2 | large tumor suppressor kina... | XM_017020541.1 | 44.4% | 12.7% | (many diffs) |
| 4 | human | 26524 | LATS2 | large tumor suppressor kina... | XM_011535042.2 | 43.5% | 13% | (many diffs) |
| 5 | human | 26524 | LATS2 | large tumor suppressor kina... | XM_017020542.1 | 29.4% | 27.8% | (many diffs) |
| 6 | mouse | 50523 | Lats2 | large tumor suppressor 2 | NM_015771.2 | 40.6% | 22.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 98
- ORF end:
- 923
- ORF length:
- 825
- Sequence:
-
1 AATGATTTTA TTTTGACTGA TAGTGACCTG TTCGTTGCAA CAAATTGATG AGCAATGCTT 61 TTTTATAATG CCAACTTTGT ACAAAAAAGT TGGCACCATG AGGCCAAAGA CTTTTCCTGC 121 CACGACTTAT TCTGGAAATA GCCGGCAGCG ACTGCAAGAG ATTCGTGAGG GGTTAAAGCA 181 GCCATCCAAG TCTTCGGTTC AGGGGCTACC CGCAGGACCA AACAGTGACA CTTCCCTGGA 241 TGCCAAAGTC CTGGGGAGCA AAGATGCCAC CAGGCAGCAG CAGCAGATGA GAGCCACCCC 301 AAAGTTCGGA CCTTATCAGA AAGCCTTGAG GGAAATCAGA TATTCCTTGT TGCCTTTTGC 361 TAATGAATCG GGCACCTCTG CAGCTGCAGA AGTGAACCGG CAAATGCTGC AGGAACTGGT 421 GAACGCAGGA TGCGACCAGG AGATGGCTGG CCGAGCTCTC AAGCAGACTG GCAGCAGGAG 481 CATCGAGGCC GCCCTGGAGT ACATCAGCAA GATGGGCTAC CTGGACCCGA GGAATGAGCA 541 GATTGTGCGG GTCATTAAGC AGACCTCCCC AGGAAAGGGG CTCATGCCAA CCCCAGTGAC 601 GCGGAGGCCC AGCTTCGAAG GAACCGGCGA TTCGTTTGCG TCCTTCCCTG AGCACCTGGC 661 CCGGTTCTAC ATCGCAGAGC TGACTTTGGC CATTGAGAGT GTCCACAAGA TGGGCTTCAT 721 CCACCGAGAC ATCAAGCCTG ATAACATTTT GATAGATCTG GATGGTCACA TTAAACTCAC 781 AGATTTCGGC CTCTGCACTG GGTTCAGTGA CTCACAANTC CCAAANTATT NCCAGAAANG 841 NAGCCATGTC AGACAGGACA GCATGGAGCC CAGCGACNTT CTGGGGATGA TGTGGTTCTA 901 NCNGGTCGGT GTGGGGACAG GCTGAGACCC CTAGAGCAGA GGGCGCGGAA GCAGCACCAG 961 AGGTGCCTGG CACATTCACT GGTGGGGACT CCAAACTACA TCGCACCCGA GGTGCTCCTC 1021 CGCAAAGGGT ACACTCAACT CTGTGACTGG TGGAGTGTTG GAGTGATTCT CTTCGAGATG 1081 CTGGTGGGGC AGCCGCCCTT TTTGGCACCT ACTCCCACAG AAACCCAGCT GAAGGTGATC 1141 AACTGGGAGA ACACGCTCCA CATTCCAGCC CAGGTGAAGC TGAGCCCTGA GGCCAGGGAC 1201 CTCATCACCA AGCTGTGCTG CTCCGCAGAC CACCGCCTGG GGCGGAATGG GGCCGATGAC 1261 CTGAAGGCCC ACCCCTTCTT CAGCGCCATT GACTTCTCCA GTGACATCCG GAAGCAGCCA 1321 GCCCCCTACG TTCCCACCAT CAGCCACCCC ATGGACACCT CGAATTTCGA CCCCGTAGAT 1381 GAAGAAAGCC CTTGGAACGA TGCCAGCGAA GGTAGCACCA AGGCCTGGGA CACACTCACC 1441 TCGCCCAATA ACAAGCATCC TGAGCACGCA TTTTACGAAT TCACCTTCCG AAGGTTCTTT 1501 GATGACAATG GCTACCCCTT TCGATGCCCA AAGCCTTCAG GAGCAGAAGC TTCACAGGCT 1561 GAGAGCTCAG ATTTAGAAAG CTCTGATCTG GTGGATCAGA CTGAAGGCTG CCAGCCTGTG 1621 TACGTGTTGC CAACTTTCTT GTACAAAGTT GGCATTATAA GAAAGCATTG CTTATCAATT 1681 TGTTGCAACG AACAGGTCAC TATCAGTCAA AATAAAATCA TTATTGCCAT CCCAGCTGAT 1741 TAT