Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_15207
- Subject:
- NM_001364730.1
- Aligned Length:
- 1701
- Identities:
- 998
- Gaps:
- 615
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGCCCTGCTGTAGTCACAGGAGGTGTAGAGAGGACCCCGGGACATCTGAAAGCCAGGAAATGGACCCAGTGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTTTGATGATGTTGCTGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTGGATATTTCCCAGAGGAAACTCTACA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGGAAGTGATGCTGGAAACTTTCAGGAACCTGACCTCTGTAGGAAAAAGTTGGAAAGACCAGAACATTGAATAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAGTACCAAAACCCCAGGAGAAACTTCAGGAGTCTCATAGAAAAGAAAGTCAATGAAATTAAAGATGACAGTCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TTGTGGAGAAACTTTTACCCAGGTTCCAGATGACAGGCTGAACTTCCAGGAGAAGAAAGCTTCTCCTGAAATAA 370
Query 1 --------------------------------------------------------ATGAACATCAGAGGTGAC 18
||||||||||||||||||
Sbjct 371 AATCATGTGACAGCTTTGTGTGTGGAGAAGTTGGCCTAGGTAACTCATCTTTTAATATGAACATCAGAGGTGAC 444
Query 19 ACTGGACACAAGGCATGTGAATGTCAGGAATATGGACCAAAGCCATGGAAGAGTCAACAACCTAAAAAAGCCTT 92
|.||||||||||||.|.|||.|.|||||||||||||||.||||||||.|||.||||||||||||||||||||||
Sbjct 445 ATTGGACACAAGGCCTATGAGTATCAGGAATATGGACCGAAGCCATGTAAGTGTCAACAACCTAAAAAAGCCTT 518
Query 93 CAGATATCACCCCTCCTTGAGAACACAAGAAAGGGATCACACTGGAAAGAAACCCTATGCTTGTAAAGAATGTG 166
||||||||||||||||||.|||||||.|.|||||||||||||||||.|||||||||||||||||||||||||||
Sbjct 519 CAGATATCACCCCTCCTTTAGAACACCACAAAGGGATCACACTGGAGAGAAACCCTATGCTTGTAAAGAATGTG 592
Query 167 GAAAAAACATTATTTACCATTCAAGCATTCAAAGACACATGGTAGTGCACAGTGGGGATGGACCTTATAAATGT 240
||||||...||||||.||||||||||||||||||||||.|||||.|||||||||||||||||||||||||||||
Sbjct 593 GAAAAACTTTTATTTCCCATTCAAGCATTCAAAGACACGTGGTAATGCACAGTGGGGATGGACCTTATAAATGT 666
Query 241 AAGTTTTGTGGGAAAGCATTCCATTGTCTCAGTTTATATCTTATCCATGAAAGAACTCACACTGGAGAGAAACC 314
||.||||||||||||||.|||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct 667 AAATTTTGTGGGAAAGCCTTCCATTGTCTCAGTTTATATCTTATCCATGAAAGAATTCACACTGGAGAGAAACC 740
Query 315 GTATGAATGTAAACAATGTGGTAAATCTTTTAGTTATTCTGCTACCCATCGAATACATGAAAGAACTCACATTG 388
.||||||||||||||||||||||||||.|||||||||||||||||||.|||||||||.|||||||||||||.||
Sbjct 741 ATATGAATGTAAACAATGTGGTAAATCCTTTAGTTATTCTGCTACCCTTCGAATACACGAAAGAACTCACACTG 814
Query 389 GAGAAAAGCCTTATGAATGTCAGGAATGTGGGAAAGCATTCCATAGTCCCAGATCCTGTCACAGACATGAAAGG 462
|||||||||||||||||||||||.||||||||||||||||.|||||||||||||.||.||..||||||||||||
Sbjct 815 GAGAAAAGCCTTATGAATGTCAGCAATGTGGGAAAGCATTTCATAGTCCCAGATGCTATCGTAGACATGAAAGG 888
Query 463 AGTCACATGGGAGAGAAGGCTTATCAATGTAAGGAATGTGGAAAAGCATTCATGTGTCCCCGTTATGTTCGTAG 536
|.|||||.||||||||||||||||||||||||||||||||||||||||||||.||||||||..||||||||||.
Sbjct 889 ATTCACACGGGAGAGAAGGCTTATCAATGTAAGGAATGTGGAAAAGCATTCACGTGTCCCCAGTATGTTCGTAT 962
Query 537 ACATGAAAGGACCCACTCTAGGAAAAAACTTTATGAATGTAAGCAGTGTGGGAAAGCATTATCCTCTCTTACAA 610
|||||||||||||||||||||||||||||..||||||||||.||||||||||||||||||||||||||||||||
Sbjct 963 ACATGAAAGGACCCACTCTAGGAAAAAACCCTATGAATGTACGCAGTGTGGGAAAGCATTATCCTCTCTTACAA 1036
Query 611 GTTTTCAAACACACATAAGAATGCACTCTGGAGAAAGACCTTATGAATGTAAGACATGTGGGAAAGGCTTTTAT 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||.|
Sbjct 1037 GTTTTCAAACACACATAAGAATGCACTCTGGAGAAAGACCTTATGAATGTAAGATATGTGGGAAAGGCTTTTGT 1110
Query 685 TCTGCCAAGTCATTTCAAAGACATGAAAAAACTCACAGTGGAGAGAAACCGTATAAATGCAAGCAATGTGGTAA 758
||||||||.|||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 1111 TCTGCCAATTCATTTCAAAGACATGAAAAAACTCACAGTGGAGAGAAACCCTATAAATGCAAGCAATGTGGTAA 1184
Query 759 AGCCTTCACTCGTTCCGGTTCCTTTCGATATCATGAAAGGACTCACACTGGAGAGAAACCCTATGAGTGTAAGC 832
||||||||.||.||||.|||||.||||.|||||||||||||.||||||||||||||||||||||||||||||||
Sbjct 1185 AGCCTTCATTCATTCCAGTTCCCTTCGTTATCATGAAAGGATTCACACTGGAGAGAAACCCTATGAGTGTAAGC 1258
Query 833 AATGTGGGAAAGCCTTCAGATCTGCCCCAAATCTTCAATCGCATGGTAGGACTCACACTGGAGAGAAACCGTAT 906
||||||||||.||||||||||||.||.||.|.|||||||.|||||||||||||||||||||||||||.||.|||
Sbjct 1259 AATGTGGGAAGGCCTTCAGATCTTCCTCACACCTTCAATTGCATGGTAGGACTCACACTGGAGAGAAGCCCTAT 1332
Query 907 CAATGTAAGGAATGTGGGAAAGCTTTCAGATCT-------GCCT-----------------CACAA-------- 948
.|||||.||||||||||||||||.||||||||| .||| |||||
Sbjct 1333 GAATGTCAGGAATGTGGGAAAGCCTTCAGATCTATGAAGAACCTTCAAAGTCATGAAAGGACACAAACACACGT 1406
Query 949 -----------------------CTT-------------------------------------CGAATC----- 957
||| |.||||
Sbjct 1407 AAGAATACACTCTGGAGAAAGACCTTATAAATGTAAGCTATGTGGGAAAGGCTTTTATTGTCCCAAATCATTGC 1480
Query 958 -----CATCGTAGGATTCACACTGGAGAGAAACCCTATGAATGTAAGAAATGTGGGAAAGCCTTCAGATATGTC 1026
|||...|..|.|||||||||||||||||.|||||||||.|||.|||||||..|||||||||| ||..||
Sbjct 1481 AAAGACATGAAAAAACTCACACTGGAGAGAAACTCTATGAATGCAAGCAATGTGGTGAAGCCTTCAG-TAGTTC 1553
Query 1027 CAG-AACTTTCGATTTCATGAAAGGACAAACAC---------AC---ATAA--GAATGCACTCTGGAGAAAGAC 1085
||| ..||||||||..|||||||||||..|||| || |||| |.|.|||.|.||| ||||| |
Sbjct 1554 CAGTTCCTTTCGATACCATGAAAGGACTCACACTGGAGAGAAACCCTATAAATGCAAGCAATGTGG-GAAAG-C 1625
Query 1086 CTTA--------------------------------------------------------------------- 1089
|||.
Sbjct 1626 CTTCAGAGCTGCCTCAGTCCTTCGAATGCATGGTAGGACTCACCCTGAAGATAAACCCTATGAGTGTAAGCAA 1698
