Construct: ORF ccsbBroadEn_15207

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016121.1_s300c1, BRDN0000389424
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF439 (90594)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 90594 ZNF439 zinc finger protein 439 NM_001348724.1 99.7% 99.4% 872T>C;1054C>A;1056A>C
2 human 90594 ZNF439 zinc finger protein 439 NM_001348725.1 99.7% 99.4% 872T>C;1054C>A;1056A>C
3 human 90594 ZNF439 zinc finger protein 439 NM_001348722.1 80% 79.8% (many diffs)
4 human 90594 ZNF439 zinc finger protein 439 NM_001348723.1 80% 79.8% (many diffs)
5 human 90594 ZNF439 zinc finger protein 439 NM_001348720.1 74.4% 74.2% (many diffs)
6 human 90594 ZNF439 zinc finger protein 439 NM_001348721.1 74.4% 74.2% (many diffs)
7 human 90594 ZNF439 zinc finger protein 439 NM_152262.2 72.5% 72.3% (many diffs)
8 human 90594 ZNF439 zinc finger protein 439 NM_001348719.1 71.8% 71.6% (many diffs)
9 human 90594 ZNF439 zinc finger protein 439 NM_001348718.1 71.4% 71.2% (many diffs)
10 human 126070 ZNF440 zinc finger protein 440 XM_017026254.1 69.8% 60.6% (many diffs)
11 human 284390 ZNF763 zinc finger protein 763 NM_001367174.2 64.7% 56.7% (many diffs)
12 human 7620 ZNF69 zinc finger protein 69 NM_001364731.1 60.1% 53.4% (many diffs)
13 human 7620 ZNF69 zinc finger protein 69 NM_001364730.1 58.6% 52.1% (many diffs)
14 human 7620 ZNF69 zinc finger protein 69 XM_006722873.4 58.3% 51.8% (many diffs)
15 human 126070 ZNF440 zinc finger protein 440 NM_152357.3 55.5% 48.2% (many diffs)
16 human 126070 ZNF440 zinc finger protein 440 XM_005259731.4 55.2% 47.9% (many diffs)
17 human 284390 ZNF763 zinc finger protein 763 NM_001367172.2 48.5% 42.4% (many diffs)
18 human 284390 ZNF763 zinc finger protein 763 NM_001367173.2 48.3% 42.2% (many diffs)
19 human 284390 ZNF763 zinc finger protein 763 NM_001012753.2 48.2% 42.2% (many diffs)
20 human 90592 ZNF700 zinc finger protein 700 NM_144566.3 44.1% 38.5% (many diffs)
21 human 90592 ZNF700 zinc finger protein 700 NM_001271848.1 43.9% 38.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1155
ORF length:
1089
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA CATCAGAGGT GACACTGGAC ACAAGGCATG TGAATGTCAG GAATATGGAC
121CAAAGCCATG GAAGAGTCAA CAACCTAAAA AAGCCTTCAG ATATCACCCC TCCTTGAGAA
181CACAAGAAAG GGATCACACT GGAAAGAAAC CCTATGCTTG TAAAGAATGT GGAAAAAACA
241TTATTTACCA TTCAAGCATT CAAAGACACA TGGTAGTGCA CAGTGGGGAT GGACCTTATA
301AATGTAAGTT TTGTGGGAAA GCATTCCATT GTCTCAGTTT ATATCTTATC CATGAAAGAA
361CTCACACTGG AGAGAAACCG TATGAATGTA AACAATGTGG TAAATCTTTT AGTTATTCTG
421CTACCCATCG AATACATGAA AGAACTCACA TTGGAGAAAA GCCTTATGAA TGTCAGGAAT
481GTGGGAAAGC ATTCCATAGT CCCAGATCCT GTCACAGACA TGAAAGGAGT CACATGGGAG
541AGAAGGCTTA TCAATGTAAG GAATGTGGAA AAGCATTCAT GTGTCCCCGT TATGTTCGTA
601GACATGAAAG GACCCACTCT AGGAAAAAAC TTTATGAATG TAAGCAGTGT GGGAAAGCAT
661TATCCTCTCT TACAAGTTTT CAAACACACA TAAGAATGCA CTCTGGAGAA AGACCTTATg
721aatgtaagac atgtgggaaa ggcttttatt ctgccaagtc atttcaaaga catgaaaaaa
781ctcacagtgg agagaaaccg tataaatgca agcaatgtgg taaagccttc actcgttccg
841gttcctttcg atatcatgaa aggactcaca ctggagagaa accctatgag tgtaagcaat
901gtgggaaagc cttcagatct gccccaaatc ttcaatcgca tggtaggact cacactggag
961agaaaccgta tcaatgtaag gaatgtggga aagctttcag atctgcctca caacttcgaa
1021tccatcgtag gattcacact ggagagaaac cctatgaatg taagaaatgt gggaaagcct
1081tcagatatgt ccagaacttt cgatttcatg aaaggaCAAA CACACATAAG AATGCACTCT
1141GGAGAAAGAC CTTATACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
1201tatcaatttg ttgcaacgaa c

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