Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_15207
- Subject:
- NM_001364731.1
- Aligned Length:
- 1659
- Identities:
- 998
- Gaps:
- 573
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGCCCTGCTGTAGTCACAGGAGGTGTAGAGAGGACCCCGGGACATCTGAAAGCCAGGAAATGGAGGAGTGGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTTGCTGGATATTTCCCAGAGGAAACTCTACAAGGAAGTGATGCTGGAAACTTTCAGGAACCTGACCTCTGTAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GAAAAAGTTGGAAAGACCAGAACATTGAATATGAGTACCAAAACCCCAGGAGAAACTTCAGGAGTCTCATAGAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAGAAAGTCAATGAAATTAAAGATGACAGTCATTGTGGAGAAACTTTTACCCAGGTTCCAGATGACAGGCTGAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTTCCAGGAGAAGAAAGCTTCTCCTGAAATAAAATCATGTGACAGCTTTGTGTGTGGAGAAGTTGGCCTAGGTA 370
Query 1 --------------ATGAACATCAGAGGTGACACTGGACACAAGGCATGTGAATGTCAGGAATATGGACCAAAG 60
|||||||||||||||||||.||||||||||||.|.|||.|.|||||||||||||||.|||
Sbjct 371 ACTCATCTTTTAATATGAACATCAGAGGTGACATTGGACACAAGGCCTATGAGTATCAGGAATATGGACCGAAG 444
Query 61 CCATGGAAGAGTCAACAACCTAAAAAAGCCTTCAGATATCACCCCTCCTTGAGAACACAAGAAAGGGATCACAC 134
|||||.|||.||||||||||||||||||||||||||||||||||||||||.|||||||.|.|||||||||||||
Sbjct 445 CCATGTAAGTGTCAACAACCTAAAAAAGCCTTCAGATATCACCCCTCCTTTAGAACACCACAAAGGGATCACAC 518
Query 135 TGGAAAGAAACCCTATGCTTGTAAAGAATGTGGAAAAAACATTATTTACCATTCAAGCATTCAAAGACACATGG 208
||||.|||||||||||||||||||||||||||||||||...||||||.||||||||||||||||||||||.|||
Sbjct 519 TGGAGAGAAACCCTATGCTTGTAAAGAATGTGGAAAAACTTTTATTTCCCATTCAAGCATTCAAAGACACGTGG 592
Query 209 TAGTGCACAGTGGGGATGGACCTTATAAATGTAAGTTTTGTGGGAAAGCATTCCATTGTCTCAGTTTATATCTT 282
||.|||||||||||||||||||||||||||||||.||||||||||||||.||||||||||||||||||||||||
Sbjct 593 TAATGCACAGTGGGGATGGACCTTATAAATGTAAATTTTGTGGGAAAGCCTTCCATTGTCTCAGTTTATATCTT 666
Query 283 ATCCATGAAAGAACTCACACTGGAGAGAAACCGTATGAATGTAAACAATGTGGTAAATCTTTTAGTTATTCTGC 356
|||||||||||||.||||||||||||||||||.||||||||||||||||||||||||||.||||||||||||||
Sbjct 667 ATCCATGAAAGAATTCACACTGGAGAGAAACCATATGAATGTAAACAATGTGGTAAATCCTTTAGTTATTCTGC 740
Query 357 TACCCATCGAATACATGAAAGAACTCACATTGGAGAAAAGCCTTATGAATGTCAGGAATGTGGGAAAGCATTCC 430
|||||.|||||||||.|||||||||||||.|||||||||||||||||||||||||.||||||||||||||||.|
Sbjct 741 TACCCTTCGAATACACGAAAGAACTCACACTGGAGAAAAGCCTTATGAATGTCAGCAATGTGGGAAAGCATTTC 814
Query 431 ATAGTCCCAGATCCTGTCACAGACATGAAAGGAGTCACATGGGAGAGAAGGCTTATCAATGTAAGGAATGTGGA 504
||||||||||||.||.||..|||||||||||||.|||||.||||||||||||||||||||||||||||||||||
Sbjct 815 ATAGTCCCAGATGCTATCGTAGACATGAAAGGATTCACACGGGAGAGAAGGCTTATCAATGTAAGGAATGTGGA 888
Query 505 AAAGCATTCATGTGTCCCCGTTATGTTCGTAGACATGAAAGGACCCACTCTAGGAAAAAACTTTATGAATGTAA 578
||||||||||.||||||||..||||||||||.|||||||||||||||||||||||||||||..||||||||||.
Sbjct 889 AAAGCATTCACGTGTCCCCAGTATGTTCGTATACATGAAAGGACCCACTCTAGGAAAAAACCCTATGAATGTAC 962
Query 579 GCAGTGTGGGAAAGCATTATCCTCTCTTACAAGTTTTCAAACACACATAAGAATGCACTCTGGAGAAAGACCTT 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GCAGTGTGGGAAAGCATTATCCTCTCTTACAAGTTTTCAAACACACATAAGAATGCACTCTGGAGAAAGACCTT 1036
Query 653 ATGAATGTAAGACATGTGGGAAAGGCTTTTATTCTGCCAAGTCATTTCAAAGACATGAAAAAACTCACAGTGGA 726
||||||||||||.|||||||||||||||||.|||||||||.|||||||||||||||||||||||||||||||||
Sbjct 1037 ATGAATGTAAGATATGTGGGAAAGGCTTTTGTTCTGCCAATTCATTTCAAAGACATGAAAAAACTCACAGTGGA 1110
Query 727 GAGAAACCGTATAAATGCAAGCAATGTGGTAAAGCCTTCACTCGTTCCGGTTCCTTTCGATATCATGAAAGGAC 800
||||||||.|||||||||||||||||||||||||||||||.||.||||.|||||.||||.|||||||||||||.
Sbjct 1111 GAGAAACCCTATAAATGCAAGCAATGTGGTAAAGCCTTCATTCATTCCAGTTCCCTTCGTTATCATGAAAGGAT 1184
Query 801 TCACACTGGAGAGAAACCCTATGAGTGTAAGCAATGTGGGAAAGCCTTCAGATCTGCCCCAAATCTTCAATCGC 874
||||||||||||||||||||||||||||||||||||||||||.||||||||||||.||.||.|.|||||||.||
Sbjct 1185 TCACACTGGAGAGAAACCCTATGAGTGTAAGCAATGTGGGAAGGCCTTCAGATCTTCCTCACACCTTCAATTGC 1258
Query 875 ATGGTAGGACTCACACTGGAGAGAAACCGTATCAATGTAAGGAATGTGGGAAAGCTTTCAGATCT-------GC 941
|||||||||||||||||||||||||.||.|||.|||||.||||||||||||||||.||||||||| .|
Sbjct 1259 ATGGTAGGACTCACACTGGAGAGAAGCCCTATGAATGTCAGGAATGTGGGAAAGCCTTCAGATCTATGAAGAAC 1332
Query 942 CT-----------------CACAA-------------------------------CTT---------------- 951
|| ||||| |||
Sbjct 1333 CTTCAAAGTCATGAAAGGACACAAACACACGTAAGAATACACTCTGGAGAAAGACCTTATAAATGTAAGCTATG 1406
Query 952 ---------------------CGAATC----------CATCGTAGGATTCACACTGGAGAGAAACCCTATGAAT 994
|.|||| |||...|..|.|||||||||||||||||.||||||||
Sbjct 1407 TGGGAAAGGCTTTTATTGTCCCAAATCATTGCAAAGACATGAAAAAACTCACACTGGAGAGAAACTCTATGAAT 1480
Query 995 GTAAGAAATGTGGGAAAGCCTTCAGATATGTCCAG-AACTTTCGATTTCATGAAAGGACAAACAC--------- 1058
|.|||.|||||||..|||||||||| ||..||||| ..||||||||..|||||||||||..||||
Sbjct 1481 GCAAGCAATGTGGTGAAGCCTTCAG-TAGTTCCAGTTCCTTTCGATACCATGAAAGGACTCACACTGGAGAGAA 1553
Query 1059 AC---ATAA--GAATGCACTCTGGAGAAAGACCTTA-------------------------------------- 1089
|| |||| |.|.|||.|.||| ||||| ||||.
Sbjct 1554 ACCCTATAAATGCAAGCAATGTGG-GAAAG-CCTTCAGAGCTGCCTCAGTCCTTCGAATGCATGGTAGGACTCA 1625
Query 1090 ------------------------------- 1089
Sbjct 1626 CCCTGAAGATAAACCCTATGAGTGTAAGCAA 1656
