Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_15207
- Subject:
- NM_144566.3
- Aligned Length:
- 2230
- Identities:
- 985
- Gaps:
- 1145
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGCCCTGCTGTAGTCACAGGAGCTGTAGAGAGGACCCCGGTACATCTGAAAGCCGGGAAATGGACCCAGTGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTTTGAGGATGTGGCTGTGAACTTCACCCAGGAAGAGTGGACATTGCTGGATATTTCCCAGAAGAATCTCTTCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGGAAGTGATGCTGGAAACTTTCAGGAACCTGACCTCTATAGGAAAAAAATGGAGTGACCAGAACATTGAATAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAGTACCAAAACCCCAGAAGAAGCTTCAGGAGTCTCATAGAAGAGAAAGTCAATGAAATTAAAGAAGACAGTCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TTGTGGAGAAACTTTTACCCAGGTTCCAGATGACAGACTGAACTTCCAGGAGAAGAAAGCTTCTCCTGAAGTAA 370
Query 1 --------------------------------------------------------ATGAACATCAGAGGTGAC 18
||||.|||||||||||||
Sbjct 371 AATCATGTGACAGCTTTGTGTGTGCAGAAGTTGGCATAGGTAACTCATCTTTTAATATGAGCATCAGAGGTGAC 444
Query 19 ACTGGACACAAGGCATGTGAATGTCAGGAATATGGACCAAAGCCATGGAAGAGTCAACAACCTAAA------AA 86
||||||||||||||||.|||.|.|||||||||||||||||||||||..|||.|||||||||||||| ||
Sbjct 445 ACTGGACACAAGGCATATGAGTATCAGGAATATGGACCAAAGCCATATAAGTGTCAACAACCTAAAAATAAGAA 518
Query 87 AGCCTTCAGATATCACCCCTCCTTGAGAACACAAGAAAGGGATCACACTGGAAAGAAACCCTATGCTTGTAAAG 160
|||||||||.||||.|||.|||.|.|||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct 519 AGCCTTCAGGTATCGCCCATCCATTAGAACACAAGAAAGGGATCACACTGGAGAGAAACCCTATGCTTGTAAAG 592
Query 161 AATGTGGAAAAAACATTATTTACCATTCAAGCATTCAAAGACACATGGTAGTGCACAGTGGGGATGGACCTTAT 234
..||||||||||.|.||||||.||||||||||||||.|||||||||||||.|||||||||||||||||.|||||
Sbjct 593 TCTGTGGAAAAACCTTTATTTTCCATTCAAGCATTCGAAGACACATGGTAATGCACAGTGGGGATGGAACTTAT 666
Query 235 AAATGTAAGTTTTGTGGGAAAGCATTCCATTGTCTCAGTTTATATCTTATCCATGAAAGAACTCACACTGGAGA 308
||||||||.||||||||||||||.|||||||.|.||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAATGTAAATTTTGTGGGAAAGCCTTCCATTCTTTCAGTTTATATCTTATCCATGAAAGAACTCACACTGGAGA 740
Query 309 GAAACCGTATGAATGTAAACAATGTGGTAAATCTTTTAGTTATTCTGCTACCCATCGAATACATGAAAGAACTC 382
||||||.||||||||||||||||||||||||||.||||.||||||||||||||.||.|||||||||||||||||
Sbjct 741 GAAACCATATGAATGTAAACAATGTGGTAAATCCTTTACTTATTCTGCTACCCTTCAAATACATGAAAGAACTC 814
Query 383 ACATTGGAGAAAAGCCTTATGAATGT--CAGGAATGTGGGAAAGCATTCCATAGTCCCAGATCCTGTCACAGAC 454
|||.|||.||.|||||.||||||||| || ||||||..||||||||.||||||.|.||.||||.|||.||||
Sbjct 815 ACACTGGGGAGAAGCCCTATGAATGTAGCA--AATGTGATAAAGCATTTCATAGTTCTAGTTCCTATCATAGAC 886
Query 455 ATGAAAGGAGTCACATGGGAGAGAAGGCTTATCAATGTAAGGAATGTGGAAAAGCATTCATG--TGTCCCCGTT 526
|||||||.||||||||||||||||||.||||||||||.||.||||||||||||||||| || |.|.||.|||
Sbjct 887 ATGAAAGAAGTCACATGGGAGAGAAGCCTTATCAATGCAAAGAATGTGGAAAAGCATT--TGCATATACCAGTT 958
Query 527 ATGTTCGTAGACATGAAAGGACCCACTCTAGGAAAAAACTTTATGAATGTAAGCAGTGTGGGAAAGCATTATCC 600
.|.||||||||||||||||||||||||||.|||||||||..||||||||||||||.|.||||.|||..||||||
Sbjct 959 CTCTTCGTAGACATGAAAGGACCCACTCTGGGAAAAAACCGTATGAATGTAAGCAATATGGGGAAGGCTTATCC 1032
Query 601 TCTCTTACAAGTTTTCAAACACACATAAGAATGCACTCTGGAGAAAGACCTTATGAATGTAAGACATGTGGGAA 674
|.|||||.|||||||||||||||||||||||||.||||||||||||||||||||.|||||||||.|||||||||
Sbjct 1033 TATCTTATAAGTTTTCAAACACACATAAGAATGAACTCTGGAGAAAGACCTTATAAATGTAAGATATGTGGGAA 1106
Query 675 AGGCTTTTATTCTGCCAAGTCATTTCAAAGACATGAAAAAACTCACAGTGGAGAGAAACCGTATAAATGCAAGC 748
|||||||||||||||||||||||||||||.|||||||||||||||||.|||||||||||..|||||||||||||
Sbjct 1107 AGGCTTTTATTCTGCCAAGTCATTTCAAACACATGAAAAAACTCACACTGGAGAGAAACGCTATAAATGCAAGC 1180
Query 749 AATGTGGTAAAGCCTTCACTCGTTCCGGTTCCTTTCGATATCATGAAAGGACTCACACTGGAGAGAAACCCTAT 822
||||||||||||||||||.||.||||.||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct 1181 AATGTGGTAAAGCCTTCAATCTTTCCAGTTCCTTTCGATATCATGAAAGGATTCACACTGGAGAGAAACCCTAT 1254
Query 823 GAGTGTAAGCAATGTGGGAAAGCCTTCAGATCTGCCCCAAATCTTCAATCGCATGGTAGGACTCACACTGGAGA 896
|||||||||||.||||||||||||||||||||||||.||.|.||||.|..|||.|||.||||||||||||||||
Sbjct 1255 GAGTGTAAGCAGTGTGGGAAAGCCTTCAGATCTGCCTCACAGCTTCGAGTGCACGGTGGGACTCACACTGGAGA 1328
Query 897 GAAACCGTATCAATGTAAGGAATGTGGGAAAGCTTTCAGATCTGCCTCACAACTTCGAATCCATCGTAGGATTC 970
||||||.|||.||||||||||||||||||||||.|||||||||.|||||||.||||||.|.|||.||||||.||
Sbjct 1329 GAAACCCTATGAATGTAAGGAATGTGGGAAAGCCTTCAGATCTACCTCACACCTTCGAGTGCATGGTAGGACTC 1402
Query 971 ACACTGGAGAGAAACCCTATGAATGTAAGAAATGTGGGAAAGCCTTCAGATATGTCCAGAACTTTCGATTTCAT 1044
|.|||||||||||||||||||||||||||.|||||||||||||||||||||||||..||.||.|||.|.|||||
Sbjct 1403 ATACTGGAGAGAAACCCTATGAATGTAAGGAATGTGGGAAAGCCTTCAGATATGTGAAGCACCTTCAAATTCAT 1476
Query 1045 GAAAGGAC--AAACACACATAAGAATGCACTCTGGAGAAAGACCTTA--------------------------- 1089
|||||||| |||.||||||||||||||.||||||||||||||||||
Sbjct 1477 GAAAGGACAGAAAAACACATAAGAATGCCCTCTGGAGAAAGACCTTATAAATGTAGTATATGTGAGAAAGGCTT 1550
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 1551 TTATTCTGCCAAGTCATTTCAAACACATGAAAAAACTCACACTGGAGAGAAACCCTATGAATGCAACCAATGTG 1624
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 1625 GTAAAGCCTTCAGATGTTGCAATTCCCTTCGATATCATGAAAGGACTCACACTGGAGAGAAACCCTATGAGTGT 1698
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 1699 AAGCAATGTGGGAAAGCCTTCAGATCTGCCTCACACCTTCGAATGCATGAAAGGACTCACACTGGAGAGAAACC 1772
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 1773 CTATGAGTGTAAGCAATGTGGGAAAGCCTTCAGTTGTGCCTCAAACCTTCGAAAGCATGGTAGGACTCACACTG 1846
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 1847 GAGAGAAACCCTATGAGTGTAAGCAATGTGGGAAAGCCTTCAGATCTGCCTCAAACCTTCAGATGCATGAAAGG 1920
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 1921 ACTCACACTGGAGAGAAACCCTATGAATGTAAGGAATGCGAAAAAGCATTCTGTAAATTCTCTTCTTTTCAAAT 1994
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 1995 ACATGAAAGGAAGCACAGAGGAGAGAAGCCCTATGAATGTAAGCATTGTGGGAATGGATTCACATCTGCCAAGA 2068
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 2069 TTCTTCAAATACATGCAAGAACACACATTGGAGAGAAACACTATGAATGTAAGGAATGCGGAAAAGCATTCAAT 2142
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 2143 TATTTTTCTTCCTTGCATATACACGCAAGGACTCATATGGGAGAGAAGCCATATGAATGTAAGGATTGTGGGAA 2216
Query 1090 ---------- 1089
Sbjct 2217 AGCATTCAGC 2226
