Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_15236
- Subject:
- NM_001367174.2
- Aligned Length:
- 1794
- Identities:
- 709
- Gaps:
- 987
Alignment
Query 1 ATGGACCCAGTGGCTTTTAAGGATGTGGCTGTGAACTTCACCCAGGAGGAGTGGGCTTTGCTGGATATTTCCCA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 GAGGAAACTCTACAGGGAAGTGATGCTGGAAACTTTCAGGAACCTGACCTCTTTAGGAAAAAGGTGGAAAGACC 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 AGAACATTGAATATGAGCACCAAAACCCCAGGAGAAACTTCAGGAGTCTCATAGAAGAAAAAGTCAATGAAATT 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 AAAGATGACAGTCATTGTGGAGAAACTTTTACCCCAGTTCCAGATGACAGACTGAACTTCCAGGAGAAGAAAGC 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 TTCTCCTGAAGTAAAATCATGTGAAAGCTTTGTGTGTGGAGAAGTTGGCCTAGGTAACTCATCTTTTAATATGA 370
||||
Sbjct 1 ----------------------------------------------------------------------ATGA 4
Query 371 ACATCAGAGGTGACATTGGACACAAGGCATATGAGTATCAGGAATATGGACCAAAGCCATGTAAGTGTCAACAA 444
|||||||||||||||||||.|||||||||||.|||||||||||.||||.|||||||||||.|||||||||||||
Sbjct 5 ACATCAGAGGTGACATTGGGCACAAGGCATACGAGTATCAGGACTATGCACCAAAGCCATATAAGTGTCAACAA 78
Query 445 CCTAAAAAAGCCTTCAGATACCGCCCCTCCTTTAGAACACAAGAAAGGGATCACACTGGAGAGAAACCCAATGC 518
|||||.||||||||||||||.|.|||||||||||||||||||||||||.|||||||.||||||||||||.||||
Sbjct 79 CCTAAGAAAGCCTTCAGATATCACCCCTCCTTTAGAACACAAGAAAGGAATCACACCGGAGAGAAACCCTATGC 152
Query 519 TTGTAAAGTATGTGGAAAAACCTTTATTTCCCATTCAAGTGTTCGAAGACACATGGTAATGCACAGTGGGGATG 592
||||||||.||||||||||||||||||||||||||||.|..|||||||||.|||||||||||||||||||||||
Sbjct 153 TTGTAAAGAATGTGGAAAAACCTTTATTTCCCATTCAGGCATTCGAAGACGCATGGTAATGCACAGTGGGGATG 226
Query 593 GACCTTATAAATGTAAGTTTTGTGGGAAAGCATTCCATTGTCTCAGATTATATCTTATCCATGAAAGAATTCAC 666
|||||||||||||||||||||||||||||||..||||||||||||||||||||||||||||||||||||.||||
Sbjct 227 GACCTTATAAATGTAAGTTTTGTGGGAAAGCTGTCCATTGTCTCAGATTATATCTTATCCATGAAAGAACTCAC 300
Query 667 ACTGGAGAGAAACCATGTGAATGTAAACAGTGTGGTAAATCCTTTAGTTATTCTGCTACCCATCGAATACATAA 740
||||||||||||||.|.||||||||||||.||||.|||||||||||||||||||||||||||||||||||||.|
Sbjct 301 ACTGGAGAGAAACCGTATGAATGTAAACAATGTGTTAAATCCTTTAGTTATTCTGCTACCCATCGAATACATGA 374
Query 741 AAGAACTCACACTGGAGAAAAGCCTTATGAATATCAGGAGTGTGGGAAAGCATTTCATAGTCCCAGATCCTATC 814
||||||||||||||||||||||||||||||||.||||.|.||||||||||||||.||||||.||||.||.|.||
Sbjct 375 AAGAACTCACACTGGAGAAAAGCCTTATGAATGTCAGCAATGTGGGAAAGCATTCCATAGTTCCAGTTCTTTTC 448
Query 815 GTAGACATGAAAGGATTCACATGGGAGAAAAGGCTTATCAATGTAAGGAATGTGGAAAAGCATTCACGTGTCCC 888
||||
Sbjct 449 ---------------------------------------------------------AAGC------------- 452
Query 889 CGTTATGTTCGTATACATGAAAGGACCCACTCTAGGAAAAATCTCTATGAATGTAAGCAGTGTGGGAAAGCATT 962
||||.||||.||||||.||.||..|||.|..|||||||||||.||.|||||.||
Sbjct 453 --------------ACATAAAAGAACCCACACTGGGGGAAAGCCATATGAATGTAAACAATGTGGCAA------ 506
Query 963 ATCCTCTCTTACAAGTTTTCAAACACACGTAAGATTGCACTCTGGAGAAAGACCTTATGAATGTAAGATATGTG 1036
||||| || ||| ||| |||
Sbjct 507 ATCCT-TC-----AGT--------------------------TGG----------------TGT---------- 522
Query 1037 GAAAAGACTTTTGTTCTGTGAATTCATTTCAAAGACATGAAAAAATTCACAGTGGAGAGAAACCCTATAAATGT 1110
.||||.|||||||.||||||||.||.|||||.|||.|||||.||||.|.|||||
Sbjct 523 --------------------CATTCCTTTCAAATACATGAAAGAACTCACACTGGGGAGAAGCCCTGTGAATGT 576
Query 1111 AAGC-AGTGTGGTAAAGCCTTCCCTCATTCCAGTTCC---CTTCGATATCATGAAAGGACTCACACTGGAGAGA 1180
||| |.|||..||||||.||||.|..||.|||.||| |||.|| |||.||||||.||||||.|||||||
Sbjct 577 -AGCAAATGTAATAAAGCATTCCGTAGTTACAGATCCTATCTTAGA---CATAAAAGGAGTCACACGGGAGAGA 646
Query 1181 AACCCTATGAGTGTAAGCAATGTGGGAAAGCCTTCAGATCTGCC---TCACACCTTCG-AGTGCATGGTAGGAC 1250
|.||.|||.|.||||||.|||||.|.|||||.||||..|.|.|| || |||||| || .||||..|||||
Sbjct 647 AGCCTTATCAATGTAAGGAATGTAGAAAAGCATTCACGTATCCCAGTTC---CCTTCGTAG-ACATGAAAGGAC 716
Query 1251 TCACACTG-GAGAGAAACCGTATGAATGTAAGGAATGTGGGAAAGCCTTCAGATATGTGAATAACCTTCAAAGT 1323
.|||.||| || |.|||||.||||||||||||.|.||||||||||| ||.|.|||..||||
Sbjct 717 CCACTCTGCGA-AAAAACCTTATGAATGTAAGCAGTGTGGGAAAGC--------------ATTATCTTATAAGT 775
Query 1324 CATGAAAGGACACAAACACACATAAGAATACACTCTGGAGAAAGACGTTATAAATGTAAGATATGTGGGAAAGG 1397
..| |||||||||.|||||||.|.||||||||||||||.|||
Sbjct 776 TTT---------CAAACACACCTAAGAATGCGCTCTGGAGAAAGACCTTA------------------------ 816
Query 1398 CTTTTATTGTCCCAAATCATTTCAAAGACATGAAAAAACTCACACTGGAGAGAAACTCTATGAATGCAAGCAAC 1471
Sbjct 817 -------------------------------------------------------------------------- 816
Query 1472 GTTCAGTAGTTCCTTCAGTAGTTCCAGTTCCTTTTGATATCATGAAAGGACTCACACTGGAGAGAAGCCCTATA 1545
Sbjct 817 -------------------------------------------------------------------------- 816
Query 1546 AATGCGAGCAATGTGGGAAAGCCTTCAGAGCTGTGTCAATCCTTTGAATGCATGGTAGGACTCACCCTGAAGAG 1619
Sbjct 817 -------------------------------------------------------------------------- 816
Query 1620 AAACCCTATGAGTGTGAGCAATGACGGAAAGCCTTCAGATCTGCCCCACACCTTTGAATACGTGGTAGGACACA 1693
Sbjct 817 -------------------------------------------------------------------------- 816
Query 1694 CAATGGAGAGAAGCCCTATGCATGTAAGGAATGTGGGAAACCCTTCGGATCTGCCCATAACCTTCAAAGTCATG 1767
Sbjct 817 -------------------------------------------------------------------------- 816
Query 1768 AAAGGACACAAACACACA 1785
Sbjct 817 ------------------ 816
